Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001498

Physical Location & Seq

Genomic Coordinates Reverse (-)

14284583 .. 14285531

Gene Structure 949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0169300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGAGGGAGGAACTGGGTCGACCGGCGACGACGCCAACACCAACAACGGCTTCGACGGCACAACCTTCATTTTGCCGGCGAATCGCCATGGGAACCTAAAGACTGCCTCTAGTGATCAAAGCCTCAGCGACATTCTTCTCCAAATCAAGTCCTCCAAAACCCCTGCAGTTATCAATTACGGCGCAACCTGGTGTCGAGTGTGCAGCCAGATTCTTCCTGCATTCTGCAAGCTGAGTAATAGTTTCCCAAAGCTGTCGTTCGTCTATGCAGATATTGATGAATGCCCTGAAACAACTCAGCACATTCGGTATACGCCGACGTTCCATTTCTACAGAGATGGTGAGAGGGTGGATGAGATGTTTGGTGCCGGCGAAGAGCGGCTTCATGATCGCTTGTGGTTGCACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

136

Amino Acids

15.15

Weight (kDa)

5.42

Isoelectric Point (pI)

36.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	48 - 129	7.1e-14	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64200 AT5G64200
fragaria_vesca	FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_6g21680
malus_domestica	MD08G1182200.v1.1 MD14G1052000.v1.1 MD15G1367900.v1.1
prunus_persica	Prupe.1G516100_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1
pyrus_communis	pycom08g15600 pycom12g04670 pycom14g04330 pycom15g32980
rosa_chinensis	RchiOBHm_Chr3g0478961 RchiOBHm_Chr7g0239081
rosa_laevigata	RLG00000000784 RLG00000023616
rosa_multiflora	Rmu_sc0004605.1_g000002 Rmu_sc0005645.1_g000001 Rmu_sc0012163.1_g000002
rosa_roxburghii	Rroxscaffold_3G00221270 Rroxscaffold_6G00402870
rosa_rugosa	Rorug03G0169300 Rorug03G0169400 Rorug03G0169400 Rorug03G0169400 Rorug03G0169500 Rorug03G0169600 Rorug07G0325500 Rorug07G0325600 Rorug07G0325700 Rorug07G0325800
rosa_samantha	Rh3AG220800 Rh3BG252800 Rh3CG249500 Rh3DG245500 Rh7AG480000 Rh7CG497500 Rh7DG465100
rosa_wichuraiana	Rw3G019860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	365
AccBSI	CCGCTC	1 cut(s)	379
AccI	GTMKAC	2 cut(s)	20, 311
AciI	CCGC	1 cut(s)	379
AcyI	GRCGYC	1 cut(s)	33
AjnI	CCWGG	1 cut(s)	188
AjuI	GAANNNNNNNTTGG	2 cut(s)	35, 67
AluBI	AGCT	2 cut(s)	232, 253
AluI	AGCT	2 cut(s)	232, 253
ApeKI	GCWGC	1 cut(s)	204
AspLEI	GCGC	1 cut(s)	185
AsuHPI	GGTGA	1 cut(s)	353
BanI	GGYRCC	1 cut(s)	365
BbvCI	CCTCAGC	1 cut(s)	125
BbvI	GCAGC	1 cut(s)	216
BccI	CCATC	1 cut(s)	332
BceAI	ACGGC	3 cut(s)	64, 73, 196
BciT130I	CCWGG	1 cut(s)	190
BclI	TGATCA	1 cut(s)	115
BfaI	CTAG	1 cut(s)	111
BfmI	CTRYAG	2 cut(s)	165, 331
BisI	GCNGC	2 cut(s)	205, 380
BlsI	GCNGC	2 cut(s)	206, 381
Bme1390I	CCNGG	1 cut(s)	190
BmiI	GGNNCC	2 cut(s)	95, 367
BmrFI	CCNGG	1 cut(s)	190
BmrI	ACTGGG	1 cut(s)	24
BmuI	ACTGGG	1 cut(s)	24
Bpu10I	CCTNAGC	1 cut(s)	125
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	88
Bse118I	RCCGGY	3 cut(s)	23, 76, 368
Bse1I	ACTGG	1 cut(s)	19
BseBI	CCWGG	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	1 cut(s)	358
BseMII	CTCAG	3 cut(s)	139, 224, 311
BseNI	ACTGG	1 cut(s)	19
BseXI	GCAGC	1 cut(s)	216
BsgI	GTGCAG	1 cut(s)	223
Bsh1285I	CGRYCG	1 cut(s)	24
BshNI	GGYRCC	1 cut(s)	365
BsiEI	CGRYCG	1 cut(s)	24
BsiSI	CCGG	3 cut(s)	24, 77, 369
BsmI	GAATGC	2 cut(s)	221, 287
Bsp143I	GATC	2 cut(s)	115, 388
Bsp19I	CCATGG	1 cut(s)	88
BspACI	CCGC	1 cut(s)	379
BspCNI	CTCAG	3 cut(s)	138, 225, 310
BspHI	TCATGA	1 cut(s)	385
BspLI	GGNNCC	2 cut(s)	95, 367
BspMAI	CTGCAG	1 cut(s)	169
BspQI	GCTCTTC	1 cut(s)	369
BspT107I	GGYRCC	1 cut(s)	365
BsrBI	CCGCTC	1 cut(s)	379
BsrFI	RCCGGY	3 cut(s)	23, 76, 368
BsrI	ACTGG	1 cut(s)	19
BssAI	RCCGGY	3 cut(s)	23, 76, 368
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	2 cut(s)	115, 388
BssNAI	GTATAC	1 cut(s)	312
BssNI	GRCGYC	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	88
Bst1107I	GTATAC	1 cut(s)	312
Bst2UI	CCWGG	1 cut(s)	190
Bst6I	CTCTTC	1 cut(s)	369
BstACI	GRCGYC	1 cut(s)	33
BstC8I	GCNNGC	3 cut(s)	78, 230, 370
BstDEI	CTNAG	3 cut(s)	125, 233, 297
BstDSI	CCRYGG	1 cut(s)	88
BstF5I	GGATG	1 cut(s)	358
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	2 cut(s)	118, 391
BstMBI	GATC	2 cut(s)	115, 388
BstMCI	CGRYCG	1 cut(s)	24
BstMWI	GCNNNNNNNGC	1 cut(s)	57
BstNI	CCWGG	1 cut(s)	190
BstSCI	CCNGG	1 cut(s)	188
BstSFI	CTRYAG	2 cut(s)	165, 331
BstV1I	GCAGC	1 cut(s)	216
BstZ17I	GTATAC	1 cut(s)	312
BtgI	CCRYGG	1 cut(s)	88
BtsCI	GGATG	1 cut(s)	358
Cac8I	GCNNGC	3 cut(s)	78, 230, 370
CciI	TCATGA	1 cut(s)	385
CfoI	GCGC	1 cut(s)	185
Cfr10I	RCCGGY	3 cut(s)	23, 76, 368
CseI	GACGC	1 cut(s)	41
CsiI	ACCWGGT	1 cut(s)	188
CviAII	CATG	2 cut(s)	89, 386
CviJI	RGCY	6 cut(s)	51, 123, 207, 232, 253, 382
CviKI_1	RGCY	6 cut(s)	51, 123, 207, 232, 253, 382
DdeI	CTNAG	3 cut(s)	125, 233, 297
DpnI	GATC	2 cut(s)	117, 390
DpnII	GATC	2 cut(s)	115, 388
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
Eco130I	CCWWGG	1 cut(s)	88
EcoRII	CCWGG	1 cut(s)	188
EcoT14I	CCWWGG	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	2 cut(s)	92, 389
FaiI	YATR	4 cut(s)	90, 267, 312, 387
FalI	AAGNNNNNCTT	2 cut(s)	366, 398
FatI	CATG	2 cut(s)	88, 385
FbaI	TGATCA	1 cut(s)	115
FblI	GTMKAC	2 cut(s)	20, 311
Fnu4HI	GCNGC	2 cut(s)	205, 380
FokI	GGATG	1 cut(s)	365
Fsp4HI	GCNGC	2 cut(s)	205, 380
FspBI	CTAG	1 cut(s)	111
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	2 cut(s)	205, 380
HapII	CCGG	3 cut(s)	24, 77, 369
HgaI	GACGC	1 cut(s)	41
HhaI	GCGC	1 cut(s)	185
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	2 cut(s)	92, 389
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HincII	GTYRAC	1 cut(s)	21
HindII	GTYRAC	1 cut(s)	21
HinfI	GANTC	2 cut(s)	82, 211
HpaII	CCGG	3 cut(s)	24, 77, 369
HphI	GGTGA	1 cut(s)	353
Hpy166II	GTNNAC	2 cut(s)	21, 312
Hpy188III	TCNNGA	2 cut(s)	386, 408
Hpy8I	GTNNAC	2 cut(s)	21, 312
Hpy99I	CGWCG	4 cut(s)	32, 35, 59, 322
HpyAV	CCTTC	1 cut(s)	76
HpyCH4IV	ACGT	1 cut(s)	320
HpyCH4V	TGCA	6 cut(s)	167, 204, 221, 228, 269, 403
HpyF10VI	GCNNNNNNNGC	1 cut(s)	57
HpyF3I	CTNAG	3 cut(s)	125, 233, 297
HpySE526I	ACGT	1 cut(s)	320
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	2 cut(s)	92, 389
HspAI	GCGC	1 cut(s)	183
KroI	GCCGGC	2 cut(s)	76, 368
KroNI	GCCGGC	2 cut(s)	78, 370
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	2 cut(s)	115, 388
LguI	GCTCTTC	1 cut(s)	369
LpnPI	CCDG	9 cut(s)	37, 90, 175, 177, 202, 221, 231, 300, 382
Lsp1109I	GCAGC	1 cut(s)	216
MabI	ACCWGGT	1 cut(s)	188
MaeI	CTAG	1 cut(s)	111
MaeII	ACGT	1 cut(s)	320
MalI	GATC	2 cut(s)	117, 390
MbiI	CCGCTC	1 cut(s)	379
MboI	GATC	2 cut(s)	115, 388
MboII	GAAGA	3 cut(s)	128, 206, 386
MluCI	AATT	1 cut(s)	175
MnlI	CCTC	4 cut(s)	118, 134, 163, 339
MroNI	GCCGGC	2 cut(s)	76, 368
MspI	CCGG	3 cut(s)	24, 77, 369
MspR9I	CCNGG	1 cut(s)	190
Mva1269I	GAATGC	2 cut(s)	221, 287
MvaI	CCWGG	1 cut(s)	190
MwoI	GCNNNNNNNGC	1 cut(s)	57
NaeI	GCCGGC	2 cut(s)	78, 370
NcoI	CCATGG	1 cut(s)	88
NdeII	GATC	2 cut(s)	115, 388
NgoMIV	GCCGGC	2 cut(s)	76, 368
NlaIII	CATG	2 cut(s)	92, 389
NlaIV	GGNNCC	2 cut(s)	95, 367
PagI	TCATGA	1 cut(s)	385
PciSI	GCTCTTC	1 cut(s)	369
PctI	GAATGC	2 cut(s)	221, 287
PdiI	GCCGGC	2 cut(s)	78, 370
PfeI	GAWTC	2 cut(s)	82, 211
PkrI	GCNGC	2 cut(s)	206, 381
Psp6I	CCWGG	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	188
PspN4I	GGNNCC	2 cut(s)	95, 367
PstI	CTGCAG	1 cut(s)	169
SalI	GTCGAC	1 cut(s)	19
SapI	GCTCTTC	1 cut(s)	369
SatI	GCNGC	2 cut(s)	205, 380
Sau3AI	GATC	2 cut(s)	115, 388
ScrFI	CCNGG	1 cut(s)	190
SetI	ASST	6 cut(s)	68, 99, 191, 234, 255, 323
SexAI	ACCWGGT	1 cut(s)	188
SfcI	CTRYAG	2 cut(s)	165, 331
Sse9I	AATT	1 cut(s)	175
SsiI	CCGC	1 cut(s)	379
SspMI	CTAG	1 cut(s)	111
StyD4I	CCNGG	1 cut(s)	188
StyI	CCWWGG	1 cut(s)	88
TaiI	ACGT	1 cut(s)	323
TaqI	TCGA	3 cut(s)	20, 54, 196
TasI	AATT	1 cut(s)	175
TauI	GCSGC	1 cut(s)	382
TfiI	GAWTC	2 cut(s)	82, 211
TseI	GCWGC	1 cut(s)	204
TspDTI	ATGAA	3 cut(s)	58, 294, 374
XmiI	GTMKAC	2 cut(s)	20, 311
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.