Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001498

Physical Location & Seq

Genomic Coordinates Forward (+)

15236124 .. 15239329

Gene Structure 3206 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g21680.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGTCTCACTTCGGAAGGTCTGGCCCTCCGGACATCACCGATACCTACTCTCTCCTCGTCCTCAACATCTCCTTCCGGACGAGTGCCGATGATCTGTTTCCGCTTTTCGATAAGTACGGCAAGGTTGTCGACATCTTCATCCCCAGAGACCGTAGGACTGGCGAGTCCAGGGGATTTGCTTTTGTGCGATACAAGTATGCGGATGAGGCACAGAAAGCAGTTGAGAGGCTCGATGGAAGAGTTGTTGGTGGTCGTGAAATAACAGTTCAGTTTGCAAAATATGGTCCTAATGCAGAGAGGATTCATAAAGGAAGGATTACTGAATCTCTACCAAAATCAAGGCATAGGTCGCGAAGTCGCAGTCCTCGAAGAAGGTACCGCGATGACTATAGAGATCGGGACTACAGGAGGAGAAGTCACAGTAGGAGTTGGGATAGGTATGAGCGCGACAGATACCGCCATGGGAGGGACATAGACTACCGTAGAAGAGGCAGGAGCCCTAGTGCTAGTCCTGAATACTACAGGAGCAGGGGAAGGGAGCGCTATGATGATGATGATGATAGCCGGAGCCGGAGCCGGAGTCCAATCCGAAGCTGTTCTTTTGATAGTGCATCCCCTGCTCGGCGTAGCCTTACACCTCGTAGGAGCCTTTCTCCGTTAAGCAGAAGCCGCAGTGTCAGCCCTTATAGACATAGTCCTAATGTATGTTCCCCTGCTTCTCGAAGTGCTTCACCACAAGGTCGTCGTTCTGATTCTCCAAGTCCATCCCCTCGACATTCAGATGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

264

Amino Acids

30.79

Weight (kDa)

10.79

Isoelectric Point (pI)

101.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	19 - 88	4e-19	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64200 AT5G64200
fragaria_vesca	FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_6g21680
malus_domestica	MD08G1182200.v1.1 MD14G1052000.v1.1 MD15G1367900.v1.1
prunus_persica	Prupe.1G516100_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1
pyrus_communis	pycom08g15600 pycom12g04670 pycom14g04330 pycom15g32980
rosa_chinensis	RchiOBHm_Chr3g0478961 RchiOBHm_Chr7g0239081
rosa_laevigata	RLG00000000784 RLG00000023616
rosa_multiflora	Rmu_sc0004605.1_g000002 Rmu_sc0005645.1_g000001 Rmu_sc0012163.1_g000002
rosa_roxburghii	Rroxscaffold_3G00221270 Rroxscaffold_6G00402870
rosa_rugosa	Rorug03G0169300 Rorug03G0169400 Rorug03G0169400 Rorug03G0169400 Rorug03G0169500 Rorug03G0169600 Rorug07G0325500 Rorug07G0325600 Rorug07G0325700 Rorug07G0325800
rosa_samantha	Rh3AG220800 Rh3BG252800 Rh3CG249500 Rh3DG245500 Rh7AG480000 Rh7CG497500 Rh7DG465100
rosa_wichuraiana	Rw3G019860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	163
Acc65I	GGTACC	1 cut(s)	375
AccB1I	GGYRCC	1 cut(s)	375
AccI	GTMKAC	1 cut(s)	129
AccII	CGCG	3 cut(s)	352, 381, 447
AccIII	TCCGGA	2 cut(s)	28, 75
AciI	CCGC	5 cut(s)	101, 200, 379, 457, 670
AfaI	GTAC	2 cut(s)	116, 377
AfeI	AGCGCT	1 cut(s)	542
AfiI	CCNNNNNNNGG	2 cut(s)	466, 621
AjnI	CCWGG	1 cut(s)	167
AluBI	AGCT	1 cut(s)	594
AluI	AGCT	1 cut(s)	594
Alw26I	GTCTC	2 cut(s)	9, 141
Aor13HI	TCCGGA	2 cut(s)	28, 75
Aor51HI	AGCGCT	1 cut(s)	542
AoxI	GGCC	1 cut(s)	22
ArsI	GACNNNNNNTTYG	2 cut(s)	346, 378
Asp700I	GAANNNNTTC	2 cut(s)	595, 727
Asp718I	GGTACC	1 cut(s)	375
AspLEI	GCGC	2 cut(s)	447, 543
AspS9I	GGNCC	2 cut(s)	23, 284
AsuHPI	GGTGA	2 cut(s)	28, 723
AvaII	GGWCC	1 cut(s)	284
BanI	GGYRCC	1 cut(s)	375
BanII	GRGCYC	1 cut(s)	500
BccI	CCATC	2 cut(s)	227, 772
BceAI	ACGGC	1 cut(s)	133
BcgI	CGANNNNNNTGC	2 cut(s)	109, 143
BciT130I	CCWGG	1 cut(s)	169
BcoDI	GTCTC	2 cut(s)	9, 141
BfaI	CTAG	2 cut(s)	501, 507
BfmI	CTRYAG	3 cut(s)	388, 403, 520
BfoI	RGCGCY	1 cut(s)	544
BisI	GCNGC	1 cut(s)	670
BlsI	GCNGC	1 cut(s)	671
Bme1390I	CCNGG	1 cut(s)	169
Bme18I	GGWCC	1 cut(s)	284
BmgT120I	GGNCC	2 cut(s)	23, 284
BmiI	GGNNCC	5 cut(s)	377, 497, 569, 575, 647
BmrFI	CCNGG	1 cut(s)	169
BmsI	GCATC	1 cut(s)	620
BplI	GAGNNNNNCTC	2 cut(s)	637, 669
BsaI	GGTCTC	1 cut(s)	141
BsaJI	CCNNGG	2 cut(s)	168, 460
BsaWI	WCCGGW	2 cut(s)	28, 75
BsaXI	ACNNNNNCTCC	6 cut(s)	400, 430, 487, 517, 565, 595
Bsc4I	CCNNNNNNNGG	2 cut(s)	466, 621
Bse1I	ACTGG	1 cut(s)	163
BseAI	TCCGGA	2 cut(s)	28, 75
BseBI	CCWGG	1 cut(s)	169
BseDI	CCNNGG	2 cut(s)	168, 460
BseGI	GGATG	4 cut(s)	138, 208, 611, 764
BseLI	CCNNNNNNNGG	2 cut(s)	466, 621
BseNI	ACTGG	1 cut(s)	163
BseRI	GAGGAG	2 cut(s)	44, 424
Bsh1236I	CGCG	3 cut(s)	352, 381, 447
BshFI	GGCC	1 cut(s)	24
BshNI	GGYRCC	1 cut(s)	375
BsiSI	CCGG	5 cut(s)	29, 76, 565, 571, 577
BslFI	GGGAC	2 cut(s)	413, 482
BslI	CCNNNNNNNGG	2 cut(s)	466, 621
BsmAI	GTCTC	2 cut(s)	9, 141
BsmFI	GGGAC	2 cut(s)	413, 482
BsnI	GGCC	1 cut(s)	24
Bso31I	GGTCTC	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	500
Bsp13I	TCCGGA	2 cut(s)	28, 75
Bsp143I	GATC	2 cut(s)	91, 394
Bsp19I	CCATGG	1 cut(s)	460
Bsp68I	TCGCGA	1 cut(s)	352
BspACI	CCGC	5 cut(s)	101, 200, 379, 457, 670
BspANI	GGCC	1 cut(s)	24
BspEI	TCCGGA	2 cut(s)	28, 75
BspFNI	CGCG	3 cut(s)	352, 381, 447
BspLI	GGNNCC	5 cut(s)	377, 497, 569, 575, 647
BspT107I	GGYRCC	1 cut(s)	375
BspTNI	GGTCTC	1 cut(s)	141
BsrI	ACTGG	1 cut(s)	163
BssECI	CCNNGG	2 cut(s)	168, 460
BssMI	GATC	2 cut(s)	91, 394
BssT1I	CCWWGG	1 cut(s)	460
Bst2UI	CCWGG	1 cut(s)	169
Bst4CI	ACNGT	4 cut(s)	152, 265, 422, 482
Bst6I	CTCTTC	2 cut(s)	232, 481
BstAPI	GCANNNNNTGC	1 cut(s)	617
BstDSI	CCRYGG	1 cut(s)	460
BstF5I	GGATG	4 cut(s)	138, 208, 611, 764
BstFNI	CGCG	3 cut(s)	352, 381, 447
BstH2I	RGCGCY	1 cut(s)	544
BstHHI	GCGC	2 cut(s)	447, 543
BstKTI	GATC	2 cut(s)	94, 397
BstMAI	GTCTC	2 cut(s)	9, 141
BstMBI	GATC	2 cut(s)	91, 394
BstMWI	GCNNNNNNNGC	6 cut(s)	206, 215, 349, 617, 669, 678
BstNI	CCWGG	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	167
BstSFI	CTRYAG	3 cut(s)	388, 403, 520
BstUI	CGCG	3 cut(s)	352, 381, 447
BsuRI	GGCC	1 cut(s)	24
BtgI	CCRYGG	1 cut(s)	460
BtgZI	GCGATG	1 cut(s)	396
BtsCI	GGATG	4 cut(s)	138, 208, 611, 764
BtsI	GCAGTG	1 cut(s)	679
BtsIMutI	CAGTG	1 cut(s)	679
BtuMI	TCGCGA	1 cut(s)	352
CfoI	GCGC	2 cut(s)	447, 543
Cfr13I	GGNCC	2 cut(s)	23, 284
Csp6I	GTAC	2 cut(s)	115, 376
CviAII	CATG	1 cut(s)	461
CviQI	GTAC	2 cut(s)	115, 376
DpnI	GATC	2 cut(s)	93, 396
DpnII	GATC	2 cut(s)	91, 394
DrdI	GACNNNNNNGTC	1 cut(s)	163
DseDI	GACNNNNNNGTC	1 cut(s)	163
Eam1104I	CTCTTC	2 cut(s)	232, 481
EarI	CTCTTC	2 cut(s)	232, 481
Eco130I	CCWWGG	1 cut(s)	460
Eco24I	GRGCYC	1 cut(s)	500
Eco31I	GGTCTC	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	284
Eco47III	AGCGCT	1 cut(s)	542
EcoRII	CCWGG	1 cut(s)	167
EcoT14I	CCWWGG	1 cut(s)	460
EcoT38I	GRGCYC	1 cut(s)	500
ErhI	CCWWGG	1 cut(s)	460
FaeI	CATG	1 cut(s)	464
FalI	AAGNNNNNCTT	2 cut(s)	583, 615
FaqI	GGGAC	2 cut(s)	413, 482
FatI	CATG	1 cut(s)	460
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	1 cut(s)	670
FokI	GGATG	4 cut(s)	125, 215, 598, 751
FriOI	GRGCYC	1 cut(s)	500
Fsp4HI	GCNGC	1 cut(s)	670
FspBI	CTAG	2 cut(s)	501, 507
GlaI	GCGC	2 cut(s)	446, 542
GluI	GCNGC	1 cut(s)	670
HaeII	RGCGCY	1 cut(s)	544
HaeIII	GGCC	1 cut(s)	24
HapII	CCGG	5 cut(s)	29, 76, 565, 571, 577
HhaI	GCGC	2 cut(s)	447, 543
Hin1II	CATG	1 cut(s)	464
Hin6I	GCGC	2 cut(s)	445, 541
HinP1I	GCGC	2 cut(s)	445, 541
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	5 cut(s)	164, 301, 323, 580, 752
HpaII	CCGG	5 cut(s)	29, 76, 565, 571, 577
HphI	GGTGA	2 cut(s)	28, 723
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	4 cut(s)	14, 590, 751, 781
Hpy188III	TCNNGA	7 cut(s)	29, 76, 254, 351, 398, 512, 720
Hpy8I	GTNNAC	1 cut(s)	130
Hpy99I	CGWCG	1 cut(s)	747
HpyAV	CCTTC	5 cut(s)	9, 82, 306, 366, 528
HpyCH4III	ACNGT	4 cut(s)	152, 265, 422, 482
HpyCH4V	TGCA	3 cut(s)	275, 293, 611
HpyF10VI	GCNNNNNNNGC	6 cut(s)	206, 215, 349, 617, 669, 678
Hsp92II	CATG	1 cut(s)	464
HspAI	GCGC	2 cut(s)	445, 541
Kpn2I	TCCGGA	2 cut(s)	28, 75
KpnI	GGTACC	1 cut(s)	379
Kzo9I	GATC	2 cut(s)	91, 394
LmnI	GCTCC	6 cut(s)	495, 525, 538, 567, 573, 645
LweI	GCATC	1 cut(s)	620
MaeI	CTAG	2 cut(s)	501, 507
MaeIII	GTNAC	1 cut(s)	416
MalI	GATC	2 cut(s)	93, 396
MboI	GATC	2 cut(s)	91, 394
MboII	GAAGA	4 cut(s)	127, 249, 381, 498
MhlI	GDGCHC	1 cut(s)	500
MlyI	GAGTC	2 cut(s)	173, 589
MroI	TCCGGA	2 cut(s)	28, 75
MroXI	GAANNNNTTC	2 cut(s)	595, 727
MseI	TTAA	1 cut(s)	659
MslI	CAYNNNNRTG	1 cut(s)	780
MspI	CCGG	5 cut(s)	29, 76, 565, 571, 577
MspR9I	CCNGG	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	169
MvnI	CGCG	3 cut(s)	352, 381, 447
MwoI	GCNNNNNNNGC	6 cut(s)	206, 215, 349, 617, 669, 678
NcoI	CCATGG	1 cut(s)	460
NdeII	GATC	2 cut(s)	91, 394
NlaIII	CATG	1 cut(s)	464
NlaIV	GGNNCC	5 cut(s)	377, 497, 569, 575, 647
NmeAIII	GCCGAG	1 cut(s)	601
NmuCI	GTSAC	1 cut(s)	416
NruI	TCGCGA	1 cut(s)	352
PcsI	WCGNNNNNNNCGW	1 cut(s)	364
PdmI	GAANNNNTTC	2 cut(s)	595, 727
PfeI	GAWTC	3 cut(s)	301, 323, 752
PflFI	GACNNNGTC	1 cut(s)	693
PkrI	GCNGC	1 cut(s)	671
PleI	GAGTC	2 cut(s)	172, 588
PpsI	GAGTC	2 cut(s)	172, 588
Psp6I	CCWGG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	167
PspN4I	GGNNCC	5 cut(s)	377, 497, 569, 575, 647
PspPI	GGNCC	2 cut(s)	23, 284
PsyI	GACNNNGTC	1 cut(s)	693
RruI	TCGCGA	1 cut(s)	352
RsaI	GTAC	2 cut(s)	116, 377
RsaNI	GTAC	2 cut(s)	115, 376
RseI	CAYNNNNRTG	1 cut(s)	780
SalI	GTCGAC	1 cut(s)	128
SaqAI	TTAA	1 cut(s)	659
SatI	GCNGC	1 cut(s)	670
Sau3AI	GATC	2 cut(s)	91, 394
Sau96I	GGNCC	2 cut(s)	23, 284
SchI	GAGTC	2 cut(s)	173, 589
ScrFI	CCNGG	1 cut(s)	169
SduI	GDGCHC	1 cut(s)	500
SetI	ASST	9 cut(s)	20, 47, 126, 350, 377, 440, 596, 640, 742
SfaNI	GCATC	1 cut(s)	620
SfcI	CTRYAG	3 cut(s)	388, 403, 520
SinI	GGWCC	1 cut(s)	284
SmiMI	CAYNNNNRTG	1 cut(s)	780
SsiI	CCGC	5 cut(s)	101, 200, 379, 457, 670
SspMI	CTAG	2 cut(s)	501, 507
StyD4I	CCNGG	1 cut(s)	167
StyI	CCWWGG	1 cut(s)	460
TaaI	ACNGT	4 cut(s)	152, 265, 422, 482
TaqI	TCGA	6 cut(s)	108, 129, 231, 367, 721, 772
TauI	GCSGC	1 cut(s)	672
TfiI	GAWTC	3 cut(s)	301, 323, 752
Tru1I	TTAA	1 cut(s)	659
Tru9I	TTAA	1 cut(s)	659
TscAI	CASTG	1 cut(s)	679
TseFI	GTSAC	1 cut(s)	416
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	2 cut(s)	127, 293
TspGWI	ACGGA	1 cut(s)	645
TspRI	CASTG	1 cut(s)	679
Tth111I	GACNNNGTC	1 cut(s)	693
VpaK11BI	GGWCC	1 cut(s)	284
XmiI	GTMKAC	1 cut(s)	129
XmnI	GAANNNNTTC	2 cut(s)	595, 727
XspI	CTAG	2 cut(s)	501, 507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.