Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001498

Physical Location & Seq

Genomic Coordinates Reverse (-)

32297274 .. 32299366

Gene Structure 2093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g32980.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGTCGCACTTCGGTCGATCCGGACCTCCGGACATCAGAGACACCTACTCCCTCCTCGTCCTCAACATCACTTTCCGAACCACCGCGGACGACCTCTTCCCGCTCTTCGACAAGTACGGCAAGGTCGTCGATGTCTTTATTCCCCGAGACCGGAGGACTGGCGATTCTCGTGGATTTGCTTTTGTCCGATATAAGTATCAGGACGAGGCGCATAAGGCGGTGGAGAAGCTCGATGGGAGAGTTGTTGATGGAAGAGAGATTATGGTTCAGTTTGCTAAGTACGGCCCCAATGCGGAGCGAATCCACAAGGGTAGGGTAAGTGAATCAACTTCCAAGCTCAAATCAAGGTCCCGAAGCCGTAGCCCTCGTCCTAGGTATCGAGATGAATATAAGGAAAAGGATTACGGAAGTCGCAGTCGAAGTAGGGAGAGGTATAGTCGTGACAGGCACCATAGGAGTGAAAGAGAGCATCGCTACAGAAGTAGGAGCCGCAGTGCAAGTCCTGGTAATCGTAAGAGGGGCAGATATGAGGATGAGCGGCGTAGTCGGAGCCGGTCATATGGAAGTGCCTCTCCTGTTCGGAATAGCTCCAAGTCTCGCAGGAGCCCATCTCCTCGGAGGAGCCCCTCTCCTCGGAGGAGCTTATCTCCTCGCATGAGCGCATCTCCTCAGAGAAGTGCGTCTCCTCGTATGACACCACCTAGGGGTGAGAATGTTTTTGGACGCAACCGCAAGGAACGCTCTCCTACCCCCAAAGATGATTCACCAAATGGACGACGTGATGATTCTCCAAGTCCTTCCCCTCGTAAATCTGACGCTGATGTAAGCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

278

Amino Acids

32.15

Weight (kDa)

11.21

Isoelectric Point (pI)

94.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64200 AT5G64200
fragaria_vesca	FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_6g21680
malus_domestica	MD08G1182200.v1.1 MD14G1052000.v1.1 MD15G1367900.v1.1
prunus_persica	Prupe.1G516100_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1
pyrus_communis	pycom08g15600 pycom12g04670 pycom14g04330 pycom15g32980
rosa_chinensis	RchiOBHm_Chr3g0478961 RchiOBHm_Chr7g0239081
rosa_laevigata	RLG00000000784 RLG00000023616
rosa_multiflora	Rmu_sc0004605.1_g000002 Rmu_sc0005645.1_g000001 Rmu_sc0012163.1_g000002
rosa_roxburghii	Rroxscaffold_3G00221270 Rroxscaffold_6G00402870
rosa_rugosa	Rorug03G0169300 Rorug03G0169400 Rorug03G0169400 Rorug03G0169400 Rorug03G0169500 Rorug03G0169600 Rorug07G0325500 Rorug07G0325600 Rorug07G0325700 Rorug07G0325800
rosa_samantha	Rh3AG220800 Rh3BG252800 Rh3CG249500 Rh3DG245500 Rh7AG480000 Rh7CG497500 Rh7DG465100
rosa_wichuraiana	Rw3G019860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	447
AccBSI	CCGCTC	2 cut(s)	103, 538
AccII	CGCG	1 cut(s)	86
AccIII	TCCGGA	2 cut(s)	20, 28
AciI	CCGC	8 cut(s)	84, 86, 101, 218, 293, 490, 538, 730
AclWI	GGATC	1 cut(s)	12
AfaI	GTAC	2 cut(s)	116, 281
AfiI	CCNNNNNNNGG	4 cut(s)	150, 292, 633, 704
AjiI	CACGTC	1 cut(s)	779
AjnI	CCWGG	1 cut(s)	502
AluBI	AGCT	4 cut(s)	229, 337, 588, 642
AluI	AGCT	4 cut(s)	229, 337, 588, 642
Alw26I	GTCTC	4 cut(s)	33, 141, 600, 687
AlwI	GGATC	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	144
Aor13HI	TCCGGA	2 cut(s)	20, 28
AoxI	GGCC	1 cut(s)	283
AspA2I	CCTAGG	2 cut(s)	371, 701
AspLEI	GCGC	2 cut(s)	211, 662
AspS9I	GGNCC	3 cut(s)	23, 284, 348
AsuHPI	GGTGA	2 cut(s)	719, 756
AvaI	CYCGRG	1 cut(s)	144
AvaII	GGWCC	2 cut(s)	23, 348
AvrII	CCTAGG	2 cut(s)	371, 701
BanI	GGYRCC	1 cut(s)	447
BanII	GRGCYC	2 cut(s)	608, 626
BauI	CACGAG	1 cut(s)	168
BccI	CCATC	3 cut(s)	227, 242, 616
BceAI	ACGGC	3 cut(s)	133, 298, 342
BcgI	CGANNNNNNTGC	3 cut(s)	30, 109, 143
BciT130I	CCWGG	1 cut(s)	504
BcoDI	GTCTC	4 cut(s)	33, 141, 600, 687
BfaI	CTAG	2 cut(s)	372, 702
BfmI	CTRYAG	1 cut(s)	475
BisI	GCNGC	2 cut(s)	490, 539
BlnI	CCTAGG	2 cut(s)	371, 701
BlsI	GCNGC	2 cut(s)	491, 540
Bme1390I	CCNGG	1 cut(s)	504
Bme18I	GGWCC	2 cut(s)	23, 348
BmeT110I	CYCGRG	1 cut(s)	144
BmgBI	CACGTC	1 cut(s)	779
BmgT120I	GGNCC	3 cut(s)	23, 284, 348
BmiI	GGNNCC	7 cut(s)	286, 350, 449, 488, 551, 605, 623
BmrFI	CCNGG	1 cut(s)	504
BmsI	GCATC	2 cut(s)	478, 671
BplI	GAGNNNNNCTC	8 cut(s)	595, 627, 613, 645, 631, 663, 649, 681
BsaI	GGTCTC	1 cut(s)	141
BsaJI	CCNNGG	5 cut(s)	84, 371, 614, 632, 701
BsaWI	WCCGGW	3 cut(s)	20, 28, 150
BsaXI	ACNNNNNCTCC	4 cut(s)	32, 62, 478, 508
Bsc4I	CCNNNNNNNGG	4 cut(s)	150, 292, 633, 704
Bse118I	RCCGGY	1 cut(s)	552
Bse1I	ACTGG	1 cut(s)	163
BseAI	TCCGGA	2 cut(s)	20, 28
BseBI	CCWGG	1 cut(s)	504
BseDI	CCNNGG	5 cut(s)	84, 371, 614, 632, 701
BseGI	GGATG	1 cut(s)	538
BseLI	CCNNNNNNNGG	4 cut(s)	150, 292, 633, 704
BseMII	CTCAG	1 cut(s)	683
BseNI	ACTGG	1 cut(s)	163
BseRI	GAGGAG	8 cut(s)	44, 603, 621, 634, 639, 652, 657, 675
Bsh1236I	CGCG	1 cut(s)	86
Bsh1285I	CGRYCG	1 cut(s)	16
BshFI	GGCC	1 cut(s)	285
BshNI	GGYRCC	1 cut(s)	447
BsiEI	CGRYCG	1 cut(s)	16
BsiHKCI	CYCGRG	1 cut(s)	144
BsiSI	CCGG	4 cut(s)	21, 29, 151, 553
BslFI	GGGAC	1 cut(s)	334
BslI	CCNNNNNNNGG	4 cut(s)	150, 292, 633, 704
BsmAI	GTCTC	4 cut(s)	33, 141, 600, 687
BsmBI	CGTCTC	1 cut(s)	687
BsmFI	GGGAC	1 cut(s)	334
BsnI	GGCC	1 cut(s)	285
Bso31I	GGTCTC	1 cut(s)	141
BsoBI	CYCGRG	1 cut(s)	144
Bsp1286I	GDGCHC	2 cut(s)	608, 626
Bsp13I	TCCGGA	2 cut(s)	20, 28
Bsp143I	GATC	1 cut(s)	17
BspACI	CCGC	8 cut(s)	84, 86, 101, 218, 293, 490, 538, 730
BspANI	GGCC	1 cut(s)	285
BspCNI	CTCAG	1 cut(s)	682
BspEI	TCCGGA	2 cut(s)	20, 28
BspFNI	CGCG	1 cut(s)	86
BspLI	GGNNCC	7 cut(s)	286, 350, 449, 488, 551, 605, 623
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	110
BspT107I	GGYRCC	1 cut(s)	447
BspTNI	GGTCTC	1 cut(s)	141
BsrBI	CCGCTC	2 cut(s)	103, 538
BsrFI	RCCGGY	1 cut(s)	552
BsrI	ACTGG	1 cut(s)	163
BssAI	RCCGGY	1 cut(s)	552
BssECI	CCNNGG	5 cut(s)	84, 371, 614, 632, 701
BssMI	GATC	1 cut(s)	17
BssSI	CACGAG	1 cut(s)	168
BssT1I	CCWWGG	2 cut(s)	371, 701
Bst2BI	CACGAG	1 cut(s)	168
Bst2UI	CCWGG	1 cut(s)	504
Bst6I	CTCTTC	3 cut(s)	101, 110, 247
BstDEI	CTNAG	2 cut(s)	276, 669
BstDSI	CCRYGG	1 cut(s)	84
BstF5I	GGATG	1 cut(s)	538
BstFNI	CGCG	1 cut(s)	86
BstHHI	GCGC	2 cut(s)	211, 662
BstKTI	GATC	1 cut(s)	20
BstMAI	GTCTC	4 cut(s)	33, 141, 600, 687
BstMBI	GATC	1 cut(s)	17
BstMCI	CGRYCG	1 cut(s)	16
BstMWI	GCNNNNNNNGC	2 cut(s)	215, 738
BstNI	CCWGG	1 cut(s)	504
BstSCI	CCNGG	1 cut(s)	502
BstSFI	CTRYAG	1 cut(s)	475
BstUI	CGCG	1 cut(s)	86
BsuRI	GGCC	1 cut(s)	285
BtgI	CCRYGG	1 cut(s)	84
BtgZI	GCGATG	1 cut(s)	455
BtrI	CACGTC	1 cut(s)	779
BtsCI	GGATG	1 cut(s)	538
BtsI	GCAGTG	1 cut(s)	499
BtsIMutI	CAGTG	1 cut(s)	499
CfoI	GCGC	2 cut(s)	211, 662
Cfr10I	RCCGGY	1 cut(s)	552
Cfr13I	GGNCC	3 cut(s)	23, 284, 348
Cfr42I	CCGCGG	1 cut(s)	87
CseI	GACGC	3 cut(s)	669, 732, 824
Csp6I	GTAC	2 cut(s)	115, 280
CviAII	CATG	1 cut(s)	655
CviQI	GTAC	2 cut(s)	115, 280
DdeI	CTNAG	2 cut(s)	276, 669
DpnI	GATC	1 cut(s)	19
DpnII	GATC	1 cut(s)	17
Eam1104I	CTCTTC	3 cut(s)	101, 110, 247
EarI	CTCTTC	3 cut(s)	101, 110, 247
Eco130I	CCWWGG	2 cut(s)	371, 701
Eco24I	GRGCYC	2 cut(s)	608, 626
Eco31I	GGTCTC	1 cut(s)	141
Eco47I	GGWCC	2 cut(s)	23, 348
Eco88I	CYCGRG	1 cut(s)	144
EcoO109I	RGGNCCY	1 cut(s)	348
EcoRII	CCWGG	1 cut(s)	502
EcoT14I	CCWWGG	2 cut(s)	371, 701
EcoT38I	GRGCYC	2 cut(s)	608, 626
ErhI	CCWWGG	2 cut(s)	371, 701
Esp3I	CGTCTC	1 cut(s)	687
FaeI	CATG	1 cut(s)	658
FaqI	GGGAC	1 cut(s)	334
FatI	CATG	1 cut(s)	654
FauI	CCCGC	1 cut(s)	108
FauNDI	CATATG	1 cut(s)	559
Fnu4HI	GCNGC	2 cut(s)	490, 539
FokI	GGATG	1 cut(s)	545
FriOI	GRGCYC	2 cut(s)	608, 626
Fsp4HI	GCNGC	2 cut(s)	490, 539
FspBI	CTAG	2 cut(s)	372, 702
GlaI	GCGC	2 cut(s)	210, 661
GluI	GCNGC	2 cut(s)	490, 539
HaeIII	GGCC	1 cut(s)	285
HapII	CCGG	4 cut(s)	21, 29, 151, 553
HgaI	GACGC	3 cut(s)	669, 732, 824
HhaI	GCGC	2 cut(s)	211, 662
Hin1II	CATG	1 cut(s)	658
Hin6I	GCGC	2 cut(s)	209, 660
HinP1I	GCGC	2 cut(s)	209, 660
HinfI	GANTC	5 cut(s)	164, 300, 323, 761, 785
HpaII	CCGG	4 cut(s)	21, 29, 151, 553
HphI	GGTGA	2 cut(s)	719, 756
Hpy188I	TCNGA	9 cut(s)	38, 77, 188, 549, 582, 618, 636, 672, 814
Hpy188III	TCNNGA	6 cut(s)	21, 29, 200, 351, 380, 440
Hpy99I	CGWCG	2 cut(s)	131, 780
HpyAV	CCTTC	1 cut(s)	807
HpyCH4IV	ACGT	1 cut(s)	778
HpyCH4V	TGCA	1 cut(s)	497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	215, 738
HpyF3I	CTNAG	2 cut(s)	276, 669
HpySE526I	ACGT	1 cut(s)	778
Hsp92II	CATG	1 cut(s)	658
HspAI	GCGC	2 cut(s)	209, 660
Kpn2I	TCCGGA	2 cut(s)	20, 28
KspI	CCGCGG	1 cut(s)	87
Kzo9I	GATC	1 cut(s)	17
LguI	GCTCTTC	1 cut(s)	110
LmnI	GCTCC	7 cut(s)	295, 486, 549, 593, 603, 621, 639
LweI	GCATC	2 cut(s)	478, 671
MaeI	CTAG	2 cut(s)	372, 702
MaeII	ACGT	1 cut(s)	778
MaeIII	GTNAC	1 cut(s)	440
MalI	GATC	1 cut(s)	19
MbiI	CCGCTC	2 cut(s)	103, 538
MboI	GATC	1 cut(s)	17
MboII	GAAGA	3 cut(s)	88, 97, 264
MhlI	GDGCHC	2 cut(s)	608, 626
MmeI	TCCRAC	1 cut(s)	527
MroI	TCCGGA	2 cut(s)	20, 28
MslI	CAYNNNNRTG	1 cut(s)	456
MspA1I	CMGCKG	1 cut(s)	86
MspI	CCGG	4 cut(s)	21, 29, 151, 553
MspR9I	CCNGG	1 cut(s)	504
MvaI	CCWGG	1 cut(s)	504
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	2 cut(s)	215, 738
NdeI	CATATG	1 cut(s)	559
NdeII	GATC	1 cut(s)	17
NlaIII	CATG	1 cut(s)	658
NlaIV	GGNNCC	7 cut(s)	286, 350, 449, 488, 551, 605, 623
NmuCI	GTSAC	1 cut(s)	440
PciSI	GCTCTTC	1 cut(s)	110
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PfeI	GAWTC	5 cut(s)	164, 300, 323, 761, 785
PkrI	GCNGC	2 cut(s)	491, 540
PpuMI	RGGWCCY	1 cut(s)	348
Psp5II	RGGWCCY	1 cut(s)	348
Psp6I	CCWGG	1 cut(s)	502
PspGI	CCWGG	1 cut(s)	502
PspN4I	GGNNCC	7 cut(s)	286, 350, 449, 488, 551, 605, 623
PspPI	GGNCC	3 cut(s)	23, 284, 348
PspPPI	RGGWCCY	1 cut(s)	348
RsaI	GTAC	2 cut(s)	116, 281
RsaNI	GTAC	2 cut(s)	115, 280
RseI	CAYNNNNRTG	1 cut(s)	456
SacII	CCGCGG	1 cut(s)	87
SapI	GCTCTTC	1 cut(s)	110
SatI	GCNGC	2 cut(s)	490, 539
Sau3AI	GATC	1 cut(s)	17
Sau96I	GGNCC	3 cut(s)	23, 284, 348
ScrFI	CCNGG	1 cut(s)	504
SduI	GDGCHC	2 cut(s)	608, 626
SfaNI	GCATC	2 cut(s)	478, 671
SfcI	CTRYAG	1 cut(s)	475
Sfr303I	CCGCGG	1 cut(s)	87
SgrBI	CCGCGG	1 cut(s)	87
SinI	GGWCC	2 cut(s)	23, 348
SmiMI	CAYNNNNRTG	1 cut(s)	456
SsiI	CCGC	8 cut(s)	84, 86, 101, 218, 293, 490, 538, 730
SspMI	CTAG	2 cut(s)	372, 702
StyD4I	CCNGG	1 cut(s)	502
StyI	CCWWGG	2 cut(s)	371, 701
TaiI	ACGT	1 cut(s)	781
TaqI	TCGA	6 cut(s)	16, 108, 129, 231, 379, 418
TauI	GCSGC	2 cut(s)	492, 541
TfiI	GAWTC	5 cut(s)	164, 300, 323, 761, 785
TscAI	CASTG	1 cut(s)	499
TseFI	GTSAC	1 cut(s)	440
Tsp45I	GTSAC	1 cut(s)	440
TspDTI	ATGAA	1 cut(s)	399
TspGWI	ACGGA	1 cut(s)	420
TspRI	CASTG	1 cut(s)	499
VpaK11BI	GGWCC	2 cut(s)	23, 348
XmaJI	CCTAGG	2 cut(s)	371, 701
XspI	CTAG	2 cut(s)	372, 702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.