Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001498

Physical Location & Seq

Genomic Coordinates Reverse (-)

11834064 .. 11838593

Gene Structure 4530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G083500.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGTCTCACTTTGGTAGGTCTGGCCCTCCTGACATCGCTGACACTTACTCTCTCCTGGTCCTCAACATAACCTTCCGTACGAGCGCTGATGATCTGTTTCCGCTTTTCGATAAGTATGGCAAAGTTGTCGACATTTTCATCCCCAGAGACCGAAGGACTGGCGAGTCTAGGGGTTTTGCTTTTGTGCGATACAAATATGCTGATGAAGCACAGAAAGCGGTTGAAAGGCTCGATGGAAAAGTTGTTGATGGTCGAGAGATAACTGTTCAGTTTGCAAAATATGGGCCAAATGCGGAGAGGATTCAGAAAGGAAGGATTACTGAAGCTCTACCAAAATCAAGGTACAGGTCAAGAAGTCGCAGTCCTCGGAGAAGGTACCGGGATGACTACAGAGACCGTGACTACAGGAGGAGAAGTCGCAGTAGGAGTTGGGATAGGTCTGACCGTGACAGATACCATGGGAGGGACAGAGACTATCGTCGACGAAGCAGGAGCCGCAGTGCCAGCCCTGATTACTATAGGAGCAGGAGAAGAGTTCGCTATGATGATGAAAGGCGGAGTCGAAGTAGGAGTCCAATTCGAAGTCGTTCCATTGATAGTGTCTCCCCTGCTCGGCGTAGCCCTAGTCCTCATAAGAGTCCTTCCCCACTAATCAGGAGCCGCAGTGCCACCCCTGATAGACGTAGTCATGATGGACATTCCCCTACTTCTCGAATTGTTTCACCACGCCATCGTCTTGCTGATTCTCGTACCCCATCCCCTCGAAATTCAGATGTTGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

262

Amino Acids

30.87

Weight (kDa)

11.22

Isoelectric Point (pI)

101.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64200 AT5G64200
fragaria_vesca	FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_6g21680
malus_domestica	MD08G1182200.v1.1 MD14G1052000.v1.1 MD15G1367900.v1.1
prunus_persica	Prupe.1G516100_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1
pyrus_communis	pycom08g15600 pycom12g04670 pycom14g04330 pycom15g32980
rosa_chinensis	RchiOBHm_Chr3g0478961 RchiOBHm_Chr7g0239081
rosa_laevigata	RLG00000000784 RLG00000023616
rosa_multiflora	Rmu_sc0004605.1_g000002 Rmu_sc0005645.1_g000001 Rmu_sc0012163.1_g000002
rosa_roxburghii	Rroxscaffold_3G00221270 Rroxscaffold_6G00402870
rosa_rugosa	Rorug03G0169300 Rorug03G0169400 Rorug03G0169400 Rorug03G0169400 Rorug03G0169500 Rorug03G0169600 Rorug07G0325500 Rorug07G0325600 Rorug07G0325700 Rorug07G0325800
rosa_samantha	Rh3AG220800 Rh3BG252800 Rh3CG249500 Rh3DG245500 Rh7AG480000 Rh7CG497500 Rh7DG465100
rosa_wichuraiana	Rw3G019860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	163
Acc65I	GGTACC	1 cut(s)	375
AccB1I	GGYRCC	1 cut(s)	375
AccI	GTMKAC	2 cut(s)	129, 481
AciI	CCGC	6 cut(s)	101, 218, 293, 496, 556, 661
AcsI	RAATTY	1 cut(s)	766
AcuI	CTGAAG	1 cut(s)	342
AfaI	GTAC	4 cut(s)	79, 344, 377, 751
AfeI	AGCGCT	1 cut(s)	85
AfiI	CCNNNNNNNGG	2 cut(s)	463, 612
AgsI	TTSAA	1 cut(s)	224
AjnI	CCWGG	1 cut(s)	54
AluBI	AGCT	1 cut(s)	326
AluI	AGCT	1 cut(s)	326
Alw26I	GTCTC	5 cut(s)	9, 141, 387, 465, 607
Aor51HI	AGCGCT	1 cut(s)	85
AoxI	GGCC	2 cut(s)	22, 284
ApoI	RAATTY	1 cut(s)	766
ArsI	GACNNNNNNTTYG	2 cut(s)	556, 588
Asp700I	GAANNNNTTC	2 cut(s)	586, 718
Asp718I	GGTACC	1 cut(s)	375
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	3 cut(s)	23, 58, 284
AsuC2I	CCSGG	1 cut(s)	380
AsuHPI	GGTGA	1 cut(s)	714
AsuII	TTCGAA	1 cut(s)	580
AvaII	GGWCC	1 cut(s)	58
BanI	GGYRCC	1 cut(s)	375
BccI	CCATC	5 cut(s)	227, 242, 686, 738, 763
BcgI	CGANNNNNNTGC	2 cut(s)	109, 143
BciT130I	CCWGG	1 cut(s)	56
BcnI	CCSGG	1 cut(s)	380
BcoDI	GTCTC	5 cut(s)	9, 141, 387, 465, 607
BfaI	CTAG	2 cut(s)	168, 624
BfmI	CTRYAG	3 cut(s)	388, 403, 517
BfoI	RGCGCY	1 cut(s)	87
BisI	GCNGC	2 cut(s)	496, 661
BlsI	GCNGC	2 cut(s)	497, 662
Bme1390I	CCNGG	2 cut(s)	56, 380
Bme18I	GGWCC	1 cut(s)	58
BmgT120I	GGNCC	3 cut(s)	23, 58, 284
BmiI	GGNNCC	3 cut(s)	377, 494, 659
BmrFI	CCNGG	2 cut(s)	56, 380
BoxI	GACNNNNGTC	1 cut(s)	477
Bpu14I	TTCGAA	1 cut(s)	580
BpuMI	CCSGG	1 cut(s)	380
BsaI	GGTCTC	2 cut(s)	141, 387
BsaJI	CCNNGG	2 cut(s)	365, 457
BsaXI	ACNNNNNCTCC	8 cut(s)	400, 430, 484, 514, 550, 580, 649, 679
Bsc4I	CCNNNNNNNGG	2 cut(s)	463, 612
Bse1I	ACTGG	1 cut(s)	163
BseBI	CCWGG	1 cut(s)	56
BseDI	CCNNGG	2 cut(s)	365, 457
BseGI	GGATG	3 cut(s)	138, 388, 755
BseLI	CCNNNNNNNGG	2 cut(s)	463, 612
BseNI	ACTGG	1 cut(s)	163
BseRI	GAGGAG	1 cut(s)	424
BshFI	GGCC	2 cut(s)	24, 286
BshNI	GGYRCC	1 cut(s)	375
BsiSI	CCGG	1 cut(s)	379
BsiWI	CGTACG	1 cut(s)	77
BslFI	GGGAC	1 cut(s)	479
BslI	CCNNNNNNNGG	2 cut(s)	463, 612
BsmAI	GTCTC	5 cut(s)	9, 141, 387, 465, 607
BsmFI	GGGAC	1 cut(s)	479
BsnI	GGCC	2 cut(s)	24, 286
Bso31I	GGTCTC	2 cut(s)	141, 387
Bsp119I	TTCGAA	1 cut(s)	580
Bsp143I	GATC	1 cut(s)	91
Bsp19I	CCATGG	1 cut(s)	457
BspACI	CCGC	6 cut(s)	101, 218, 293, 496, 556, 661
BspANI	GGCC	2 cut(s)	24, 286
BspHI	TCATGA	1 cut(s)	688
BspLI	GGNNCC	3 cut(s)	377, 494, 659
BspT104I	TTCGAA	1 cut(s)	580
BspT107I	GGYRCC	1 cut(s)	375
BspTNI	GGTCTC	2 cut(s)	141, 387
BsrI	ACTGG	1 cut(s)	163
BssECI	CCNNGG	2 cut(s)	365, 457
BssMI	GATC	1 cut(s)	91
BssT1I	CCWWGG	1 cut(s)	457
Bst2UI	CCWGG	1 cut(s)	56
Bst4CI	ACNGT	3 cut(s)	265, 398, 446
Bst6I	CTCTTC	1 cut(s)	526
BstBI	TTCGAA	1 cut(s)	580
BstC8I	GCNNGC	1 cut(s)	505
BstDSI	CCRYGG	1 cut(s)	457
BstF5I	GGATG	3 cut(s)	138, 388, 755
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	1 cut(s)	94
BstMAI	GTCTC	5 cut(s)	9, 141, 387, 465, 607
BstMBI	GATC	1 cut(s)	91
BstMWI	GCNNNNNNNGC	4 cut(s)	206, 215, 495, 504
BstNI	CCWGG	1 cut(s)	56
BstPAI	GACNNNNGTC	1 cut(s)	477
BstSCI	CCNGG	2 cut(s)	54, 378
BstSFI	CTRYAG	3 cut(s)	388, 403, 517
BsuRI	GGCC	2 cut(s)	24, 286
BtgI	CCRYGG	1 cut(s)	457
BtgZI	GCGATG	1 cut(s)	19
BtsCI	GGATG	3 cut(s)	138, 388, 755
BtsI	GCAGTG	2 cut(s)	505, 670
BtsIMutI	CAGTG	2 cut(s)	505, 670
Cac8I	GCNNGC	1 cut(s)	505
CciI	TCATGA	1 cut(s)	688
CfoI	GCGC	1 cut(s)	86
Cfr13I	GGNCC	3 cut(s)	23, 58, 284
Csp6I	GTAC	4 cut(s)	78, 343, 376, 750
CviAII	CATG	2 cut(s)	458, 689
CviJI	RGCY	8 cut(s)	24, 229, 286, 326, 495, 507, 621, 660
CviKI_1	RGCY	8 cut(s)	24, 229, 286, 326, 495, 507, 621, 660
CviQI	GTAC	4 cut(s)	78, 343, 376, 750
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
DrdI	GACNNNNNNGTC	1 cut(s)	163
DseDI	GACNNNNNNGTC	1 cut(s)	163
Eam1104I	CTCTTC	1 cut(s)	526
EarI	CTCTTC	1 cut(s)	526
EciI	GGCGGA	1 cut(s)	571
Eco130I	CCWWGG	1 cut(s)	457
Eco31I	GGTCTC	2 cut(s)	141, 387
Eco47I	GGWCC	1 cut(s)	58
Eco47III	AGCGCT	1 cut(s)	85
Eco57I	CTGAAG	1 cut(s)	342
EcoRII	CCWGG	1 cut(s)	54
EcoT14I	CCWWGG	1 cut(s)	457
ErhI	CCWWGG	1 cut(s)	457
FaeI	CATG	2 cut(s)	461, 692
FaiI	YATR	9 cut(s)	68, 117, 198, 282, 459, 519, 543, 633, 690
FaqI	GGGAC	1 cut(s)	479
FatI	CATG	2 cut(s)	457, 688
FblI	GTMKAC	2 cut(s)	129, 481
Fnu4HI	GCNGC	2 cut(s)	496, 661
FokI	GGATG	3 cut(s)	125, 395, 742
Fsp4HI	GCNGC	2 cut(s)	496, 661
FspBI	CTAG	2 cut(s)	168, 624
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	2 cut(s)	496, 661
HaeII	RGCGCY	1 cut(s)	87
HaeIII	GGCC	2 cut(s)	24, 286
HapII	CCGG	1 cut(s)	379
HhaI	GCGC	1 cut(s)	86
Hin1II	CATG	2 cut(s)	461, 692
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HincII	GTYRAC	2 cut(s)	130, 482
HindII	GTYRAC	2 cut(s)	130, 482
HinfI	GANTC	6 cut(s)	164, 301, 559, 571, 637, 743
HpaII	CCGG	1 cut(s)	379
HphI	GGTGA	1 cut(s)	714
Hpy166II	GTNNAC	2 cut(s)	130, 482
Hpy188I	TCNGA	4 cut(s)	306, 369, 442, 772
Hpy188III	TCNNGA	6 cut(s)	29, 254, 351, 655, 689, 711
Hpy8I	GTNNAC	2 cut(s)	130, 482
Hpy99I	CGWCG	2 cut(s)	483, 486
HpyAV	CCTTC	5 cut(s)	82, 147, 306, 366, 651
HpyCH4III	ACNGT	3 cut(s)	265, 398, 446
HpyCH4IV	ACGT	1 cut(s)	682
HpyCH4V	TGCA	1 cut(s)	275
HpyF10VI	GCNNNNNNNGC	4 cut(s)	206, 215, 495, 504
HpySE526I	ACGT	1 cut(s)	682
Hsp92II	CATG	2 cut(s)	461, 692
HspAI	GCGC	1 cut(s)	84
KpnI	GGTACC	1 cut(s)	379
Kzo9I	GATC	1 cut(s)	91
LmnI	GCTCC	3 cut(s)	492, 522, 657
MaeI	CTAG	2 cut(s)	168, 624
MaeII	ACGT	1 cut(s)	682
MaeIII	GTNAC	2 cut(s)	398, 446
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MboII	GAAGA	1 cut(s)	543
MluCI	AATT	3 cut(s)	576, 714, 766
MlyI	GAGTC	4 cut(s)	173, 568, 580, 646
MnlI	CCTC	8 cut(s)	36, 71, 291, 375, 402, 456, 639, 771
MroXI	GAANNNNTTC	2 cut(s)	586, 718
MspI	CCGG	1 cut(s)	379
MspR9I	CCNGG	2 cut(s)	56, 380
MvaI	CCWGG	1 cut(s)	56
MwoI	GCNNNNNNNGC	4 cut(s)	206, 215, 495, 504
NciI	CCSGG	1 cut(s)	380
NcoI	CCATGG	1 cut(s)	457
NdeII	GATC	1 cut(s)	91
NlaIII	CATG	2 cut(s)	461, 692
NlaIV	GGNNCC	3 cut(s)	377, 494, 659
NmeAIII	GCCGAG	1 cut(s)	592
NmuCI	GTSAC	2 cut(s)	398, 446
NspV	TTCGAA	1 cut(s)	580
PagI	TCATGA	1 cut(s)	688
PdmI	GAANNNNTTC	2 cut(s)	586, 718
PfeI	GAWTC	2 cut(s)	301, 743
Pfl23II	CGTACG	1 cut(s)	77
PflFI	GACNNNGTC	1 cut(s)	684
PkrI	GCNGC	2 cut(s)	497, 662
PleI	GAGTC	4 cut(s)	172, 567, 579, 645
PpsI	GAGTC	4 cut(s)	172, 567, 579, 645
PshAI	GACNNNNGTC	1 cut(s)	477
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PspLI	CGTACG	1 cut(s)	77
PspN4I	GGNNCC	3 cut(s)	377, 494, 659
PspPI	GGNCC	3 cut(s)	23, 58, 284
PsyI	GACNNNGTC	1 cut(s)	684
RsaI	GTAC	4 cut(s)	79, 344, 377, 751
RsaNI	GTAC	4 cut(s)	78, 343, 376, 750
SalI	GTCGAC	2 cut(s)	128, 480
SatI	GCNGC	2 cut(s)	496, 661
Sau3AI	GATC	1 cut(s)	91
Sau96I	GGNCC	3 cut(s)	23, 58, 284
SchI	GAGTC	4 cut(s)	173, 568, 580, 646
ScrFI	CCNGG	2 cut(s)	56, 380
SetI	ASST	8 cut(s)	20, 74, 328, 344, 350, 377, 440, 685
SfcI	CTRYAG	3 cut(s)	388, 403, 517
SfuI	TTCGAA	1 cut(s)	580
SgrDI	CGTCGACG	1 cut(s)	480
SinI	GGWCC	1 cut(s)	58
Sse9I	AATT	3 cut(s)	576, 714, 766
SsiI	CCGC	6 cut(s)	101, 218, 293, 496, 556, 661
SspMI	CTAG	2 cut(s)	168, 624
StyD4I	CCNGG	2 cut(s)	54, 378
StyI	CCWWGG	1 cut(s)	457
TaaI	ACNGT	3 cut(s)	265, 398, 446
TaiI	ACGT	1 cut(s)	685
TaqI	TCGA	9 cut(s)	108, 129, 231, 253, 481, 562, 580, 712, 763
TaqII	GACCGA	1 cut(s)	165
TasI	AATT	3 cut(s)	576, 714, 766
TauI	GCSGC	2 cut(s)	498, 663
TfiI	GAWTC	2 cut(s)	301, 743
TscAI	CASTG	2 cut(s)	505, 670
TseFI	GTSAC	2 cut(s)	398, 446
Tsp45I	GTSAC	2 cut(s)	398, 446
TspDTI	ATGAA	3 cut(s)	127, 219, 564
TspGWI	ACGGA	1 cut(s)	65
TspRI	CASTG	2 cut(s)	505, 670
Tth111I	GACNNNGTC	1 cut(s)	684
VpaK11BI	GGWCC	1 cut(s)	58
XapI	RAATTY	1 cut(s)	766
XmiI	GTMKAC	2 cut(s)	129, 481
XmnI	GAANNNNTTC	2 cut(s)	586, 718
XspI	CTAG	2 cut(s)	168, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.