Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001498

Physical Location & Seq

Genomic Coordinates Reverse (-)

44720875 .. 44724537

Gene Structure 3663 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1367900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGTCGCACTTCGGTCGATCCGGACCTCCGGACATCAGAGACACCTACTCCCTCCTCGTCCTCAACATCACTTTCCGAACCACAGCGGACGACCTCTTCCCGCTCTTCGACAAGTACGGCAAGGTCGTCGATGTCTTCATTCCCCGAGACCGGAGGACTGGCGATTCTCGCGGATTTGCTTTTGTCCGATATAAGTATCAGGACGAGGCGCATAAGGCGGTGGAGAAGCTCGATGGGAGAGTTGTTGATGGAAGAGAGATTATGGTTCAGTTTGCTAAGTACGGCCCCAATGCGGAGCGAATCCACAAGGGTAGGGTAAGTGAATCAACTTCCAAGCTCAAATCAAGGTCCCGAAGCCGAAGTCCTCGTCCTAGGTATCGAGATGAATATAAGGAAAAGGATTACGGAACTCGTAGTCGAAGTAGGGAGAGGTATAGTCGTGACAGGCACCATAGGAGTGAAAGAGAGCATCGCTACAGAAGTAGGAGCCGCAGTGCAAGTCCTGGTAATCGTAAGAGGGCCAGATATGATGATGAGCGGCGTAGTCGGAGCCGGTCATATGGAAGTGCCTCTCCTGTTCGGAATAGCTCCAAGTCTCGCAGGAGCCCATCTCCTCGGAGGAGCTTATCTCCTCGCATGAGTGCATCTCCTCAGAGAAGCGCGTCTCCTCGTACGACACCACCTAGGGGTGAGAATGTTTTTGGACGCAACCGCAAGGAACGCTCTCCTACCCCCAAAGATGATTCACCACATGGACGACGTGATGATTCTCCAAGTCCTTCCCCTCGTAAATCTGACGCTGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

270

Amino Acids

31.32

Weight (kDa)

11.05

Isoelectric Point (pI)

87.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	18 - 87	5.8e-20	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64200 AT5G64200
fragaria_vesca	FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_6g21680
malus_domestica	MD08G1182200.v1.1 MD14G1052000.v1.1 MD15G1367900.v1.1
prunus_persica	Prupe.1G516100_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1
pyrus_communis	pycom08g15600 pycom12g04670 pycom14g04330 pycom15g32980
rosa_chinensis	RchiOBHm_Chr3g0478961 RchiOBHm_Chr7g0239081
rosa_laevigata	RLG00000000784 RLG00000023616
rosa_multiflora	Rmu_sc0004605.1_g000002 Rmu_sc0005645.1_g000001 Rmu_sc0012163.1_g000002
rosa_roxburghii	Rroxscaffold_3G00221270 Rroxscaffold_6G00402870
rosa_rugosa	Rorug03G0169300 Rorug03G0169400 Rorug03G0169400 Rorug03G0169400 Rorug03G0169500 Rorug03G0169600 Rorug07G0325500 Rorug07G0325600 Rorug07G0325700 Rorug07G0325800
rosa_samantha	Rh3AG220800 Rh3BG252800 Rh3CG249500 Rh3DG245500 Rh7AG480000 Rh7CG497500 Rh7DG465100
rosa_wichuraiana	Rw3G019860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	447
AccBSI	CCGCTC	2 cut(s)	103, 538
AccII	CGCG	2 cut(s)	171, 662
AccIII	TCCGGA	2 cut(s)	20, 28
AciI	CCGC	8 cut(s)	86, 101, 171, 218, 293, 490, 538, 712
AclWI	GGATC	1 cut(s)	12
AfaI	GTAC	3 cut(s)	116, 281, 673
AfiI	CCNNNNNNNGG	3 cut(s)	150, 292, 686
AjiI	CACGTC	1 cut(s)	761
AjnI	CCWGG	1 cut(s)	502
AluBI	AGCT	4 cut(s)	229, 337, 588, 624
AluI	AGCT	4 cut(s)	229, 337, 588, 624
Alw26I	GTCTC	4 cut(s)	33, 141, 600, 669
AlwI	GGATC	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	144
Aor13HI	TCCGGA	2 cut(s)	20, 28
AoxI	GGCC	2 cut(s)	283, 519
ArsI	GACNNNNNNTTYG	4 cut(s)	346, 352, 378, 384
AspA2I	CCTAGG	2 cut(s)	371, 683
AspLEI	GCGC	2 cut(s)	211, 662
AspS9I	GGNCC	4 cut(s)	23, 284, 348, 519
AsuHPI	GGTGA	2 cut(s)	701, 738
AvaI	CYCGRG	1 cut(s)	144
AvaII	GGWCC	2 cut(s)	23, 348
AvrII	CCTAGG	2 cut(s)	371, 683
BanI	GGYRCC	1 cut(s)	447
BanII	GRGCYC	1 cut(s)	608
BbsI	GAAGAC	1 cut(s)	127
BccI	CCATC	3 cut(s)	227, 242, 616
BceAI	ACGGC	2 cut(s)	133, 298
BcgI	CGANNNNNNTGC	3 cut(s)	30, 109, 143
BciT130I	CCWGG	1 cut(s)	504
BcoDI	GTCTC	4 cut(s)	33, 141, 600, 669
BfaI	CTAG	2 cut(s)	372, 684
BfmI	CTRYAG	1 cut(s)	475
BisI	GCNGC	2 cut(s)	490, 539
BlnI	CCTAGG	2 cut(s)	371, 683
BlsI	GCNGC	2 cut(s)	491, 540
Bme1390I	CCNGG	1 cut(s)	504
Bme18I	GGWCC	2 cut(s)	23, 348
BmeT110I	CYCGRG	1 cut(s)	144
BmgBI	CACGTC	1 cut(s)	761
BmgT120I	GGNCC	4 cut(s)	23, 284, 348, 519
BmiI	GGNNCC	6 cut(s)	286, 350, 449, 488, 551, 605
BmrFI	CCNGG	1 cut(s)	504
BmsI	GCATC	2 cut(s)	478, 653
BpiI	GAAGAC	1 cut(s)	127
BplI	GAGNNNNNCTC	6 cut(s)	595, 627, 613, 645, 631, 663
BsaI	GGTCTC	1 cut(s)	141
BsaJI	CCNNGG	3 cut(s)	371, 614, 683
BsaWI	WCCGGW	3 cut(s)	20, 28, 150
BsaXI	ACNNNNNCTCC	4 cut(s)	32, 62, 478, 508
Bsc4I	CCNNNNNNNGG	3 cut(s)	150, 292, 686
Bse118I	RCCGGY	1 cut(s)	552
Bse1I	ACTGG	1 cut(s)	163
BseAI	TCCGGA	2 cut(s)	20, 28
BseBI	CCWGG	1 cut(s)	504
BseDI	CCNNGG	3 cut(s)	371, 614, 683
BseLI	CCNNNNNNNGG	3 cut(s)	150, 292, 686
BseMII	CTCAG	1 cut(s)	665
BseNI	ACTGG	1 cut(s)	163
BseRI	GAGGAG	6 cut(s)	44, 603, 621, 634, 639, 657
Bsh1236I	CGCG	2 cut(s)	171, 662
Bsh1285I	CGRYCG	1 cut(s)	16
BshFI	GGCC	2 cut(s)	285, 521
BshNI	GGYRCC	1 cut(s)	447
BsiEI	CGRYCG	1 cut(s)	16
BsiHKCI	CYCGRG	1 cut(s)	144
BsiSI	CCGG	4 cut(s)	21, 29, 151, 553
BsiWI	CGTACG	1 cut(s)	671
BslFI	GGGAC	1 cut(s)	334
BslI	CCNNNNNNNGG	3 cut(s)	150, 292, 686
BsmAI	GTCTC	4 cut(s)	33, 141, 600, 669
BsmBI	CGTCTC	1 cut(s)	669
BsmFI	GGGAC	1 cut(s)	334
BsnI	GGCC	2 cut(s)	285, 521
Bso31I	GGTCTC	1 cut(s)	141
BsoBI	CYCGRG	1 cut(s)	144
Bsp1286I	GDGCHC	1 cut(s)	608
Bsp13I	TCCGGA	2 cut(s)	20, 28
Bsp143I	GATC	1 cut(s)	17
BspACI	CCGC	8 cut(s)	86, 101, 171, 218, 293, 490, 538, 712
BspANI	GGCC	2 cut(s)	285, 521
BspCNI	CTCAG	1 cut(s)	664
BspEI	TCCGGA	2 cut(s)	20, 28
BspFNI	CGCG	2 cut(s)	171, 662
BspLI	GGNNCC	6 cut(s)	286, 350, 449, 488, 551, 605
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	110
BspT107I	GGYRCC	1 cut(s)	447
BspTNI	GGTCTC	1 cut(s)	141
BsrBI	CCGCTC	2 cut(s)	103, 538
BsrFI	RCCGGY	1 cut(s)	552
BsrI	ACTGG	1 cut(s)	163
BssAI	RCCGGY	1 cut(s)	552
BssECI	CCNNGG	3 cut(s)	371, 614, 683
BssMI	GATC	1 cut(s)	17
BssT1I	CCWWGG	2 cut(s)	371, 683
Bst2UI	CCWGG	1 cut(s)	504
Bst6I	CTCTTC	3 cut(s)	101, 110, 247
BstDEI	CTNAG	2 cut(s)	276, 651
BstFNI	CGCG	2 cut(s)	171, 662
BstHHI	GCGC	2 cut(s)	211, 662
BstKTI	GATC	1 cut(s)	20
BstMAI	GTCTC	4 cut(s)	33, 141, 600, 669
BstMBI	GATC	1 cut(s)	17
BstMCI	CGRYCG	1 cut(s)	16
BstMWI	GCNNNNNNNGC	3 cut(s)	168, 215, 720
BstNI	CCWGG	1 cut(s)	504
BstSCI	CCNGG	1 cut(s)	502
BstSFI	CTRYAG	1 cut(s)	475
BstUI	CGCG	2 cut(s)	171, 662
BstV2I	GAAGAC	1 cut(s)	127
BsuRI	GGCC	2 cut(s)	285, 521
BtgZI	GCGATG	1 cut(s)	455
BtrI	CACGTC	1 cut(s)	761
BtsI	GCAGTG	1 cut(s)	499
BtsIMutI	CAGTG	1 cut(s)	499
CfoI	GCGC	2 cut(s)	211, 662
Cfr10I	RCCGGY	1 cut(s)	552
Cfr13I	GGNCC	4 cut(s)	23, 284, 348, 519
CseI	GACGC	2 cut(s)	651, 714
Csp6I	GTAC	3 cut(s)	115, 280, 672
CviAII	CATG	2 cut(s)	637, 752
CviQI	GTAC	3 cut(s)	115, 280, 672
DdeI	CTNAG	2 cut(s)	276, 651
DpnI	GATC	1 cut(s)	19
DpnII	GATC	1 cut(s)	17
Eam1104I	CTCTTC	3 cut(s)	101, 110, 247
EarI	CTCTTC	3 cut(s)	101, 110, 247
Eco130I	CCWWGG	2 cut(s)	371, 683
Eco24I	GRGCYC	1 cut(s)	608
Eco31I	GGTCTC	1 cut(s)	141
Eco47I	GGWCC	2 cut(s)	23, 348
Eco88I	CYCGRG	1 cut(s)	144
EcoO109I	RGGNCCY	1 cut(s)	348
EcoRII	CCWGG	1 cut(s)	502
EcoT14I	CCWWGG	2 cut(s)	371, 683
EcoT38I	GRGCYC	1 cut(s)	608
ErhI	CCWWGG	2 cut(s)	371, 683
Esp3I	CGTCTC	1 cut(s)	669
FaeI	CATG	2 cut(s)	640, 755
FaqI	GGGAC	1 cut(s)	334
FatI	CATG	2 cut(s)	636, 751
FauI	CCCGC	1 cut(s)	108
FauNDI	CATATG	1 cut(s)	559
Fnu4HI	GCNGC	2 cut(s)	490, 539
FriOI	GRGCYC	1 cut(s)	608
Fsp4HI	GCNGC	2 cut(s)	490, 539
FspBI	CTAG	2 cut(s)	372, 684
GlaI	GCGC	2 cut(s)	210, 661
GluI	GCNGC	2 cut(s)	490, 539
HaeIII	GGCC	2 cut(s)	285, 521
HapII	CCGG	4 cut(s)	21, 29, 151, 553
HgaI	GACGC	2 cut(s)	651, 714
HhaI	GCGC	2 cut(s)	211, 662
Hin1II	CATG	2 cut(s)	640, 755
Hin6I	GCGC	2 cut(s)	209, 660
HinP1I	GCGC	2 cut(s)	209, 660
HinfI	GANTC	5 cut(s)	164, 300, 323, 743, 767
HpaII	CCGG	4 cut(s)	21, 29, 151, 553
HphI	GGTGA	2 cut(s)	701, 738
Hpy188I	TCNGA	8 cut(s)	38, 77, 188, 549, 582, 618, 654, 796
Hpy188III	TCNNGA	6 cut(s)	21, 29, 200, 351, 380, 440
Hpy99I	CGWCG	2 cut(s)	131, 762
HpyAV	CCTTC	1 cut(s)	789
HpyCH4IV	ACGT	1 cut(s)	760
HpyCH4V	TGCA	2 cut(s)	497, 644
HpyF10VI	GCNNNNNNNGC	3 cut(s)	168, 215, 720
HpyF3I	CTNAG	2 cut(s)	276, 651
HpySE526I	ACGT	1 cut(s)	760
Hsp92II	CATG	2 cut(s)	640, 755
HspAI	GCGC	2 cut(s)	209, 660
Kpn2I	TCCGGA	2 cut(s)	20, 28
Kzo9I	GATC	1 cut(s)	17
LguI	GCTCTTC	1 cut(s)	110
LmnI	GCTCC	6 cut(s)	295, 486, 549, 593, 603, 621
LweI	GCATC	2 cut(s)	478, 653
MaeI	CTAG	2 cut(s)	372, 684
MaeII	ACGT	1 cut(s)	760
MaeIII	GTNAC	1 cut(s)	440
MalI	GATC	1 cut(s)	19
MbiI	CCGCTC	2 cut(s)	103, 538
MboI	GATC	1 cut(s)	17
MboII	GAAGA	4 cut(s)	88, 97, 127, 264
MhlI	GDGCHC	1 cut(s)	608
MmeI	TCCRAC	1 cut(s)	527
MroI	TCCGGA	2 cut(s)	20, 28
MslI	CAYNNNNRTG	1 cut(s)	456
MspA1I	CMGCKG	1 cut(s)	86
MspI	CCGG	4 cut(s)	21, 29, 151, 553
MspR9I	CCNGG	1 cut(s)	504
MvaI	CCWGG	1 cut(s)	504
MvnI	CGCG	2 cut(s)	171, 662
MwoI	GCNNNNNNNGC	3 cut(s)	168, 215, 720
NdeI	CATATG	1 cut(s)	559
NdeII	GATC	1 cut(s)	17
NlaIII	CATG	2 cut(s)	640, 755
NlaIV	GGNNCC	6 cut(s)	286, 350, 449, 488, 551, 605
NmuCI	GTSAC	1 cut(s)	440
PciSI	GCTCTTC	1 cut(s)	110
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PfeI	GAWTC	5 cut(s)	164, 300, 323, 743, 767
Pfl23II	CGTACG	1 cut(s)	671
PkrI	GCNGC	2 cut(s)	491, 540
PpuMI	RGGWCCY	1 cut(s)	348
Psp5II	RGGWCCY	1 cut(s)	348
Psp6I	CCWGG	1 cut(s)	502
PspGI	CCWGG	1 cut(s)	502
PspLI	CGTACG	1 cut(s)	671
PspN4I	GGNNCC	6 cut(s)	286, 350, 449, 488, 551, 605
PspPI	GGNCC	4 cut(s)	23, 284, 348, 519
PspPPI	RGGWCCY	1 cut(s)	348
RsaI	GTAC	3 cut(s)	116, 281, 673
RsaNI	GTAC	3 cut(s)	115, 280, 672
RseI	CAYNNNNRTG	1 cut(s)	456
SapI	GCTCTTC	1 cut(s)	110
SatI	GCNGC	2 cut(s)	490, 539
Sau3AI	GATC	1 cut(s)	17
Sau96I	GGNCC	4 cut(s)	23, 284, 348, 519
ScrFI	CCNGG	1 cut(s)	504
SduI	GDGCHC	1 cut(s)	608
SfaNI	GCATC	2 cut(s)	478, 653
SfcI	CTRYAG	1 cut(s)	475
SinI	GGWCC	2 cut(s)	23, 348
SmiMI	CAYNNNNRTG	1 cut(s)	456
SsiI	CCGC	8 cut(s)	86, 101, 171, 218, 293, 490, 538, 712
SspMI	CTAG	2 cut(s)	372, 684
StyD4I	CCNGG	1 cut(s)	502
StyI	CCWWGG	2 cut(s)	371, 683
TaiI	ACGT	1 cut(s)	763
TaqI	TCGA	6 cut(s)	16, 108, 129, 231, 379, 418
TauI	GCSGC	2 cut(s)	492, 541
TfiI	GAWTC	5 cut(s)	164, 300, 323, 743, 767
TscAI	CASTG	1 cut(s)	499
TseFI	GTSAC	1 cut(s)	440
Tsp45I	GTSAC	1 cut(s)	440
TspDTI	ATGAA	2 cut(s)	127, 399
TspGWI	ACGGA	1 cut(s)	420
TspRI	CASTG	1 cut(s)	499
VpaK11BI	GGWCC	2 cut(s)	23, 348
XmaJI	CCTAGG	2 cut(s)	371, 683
XspI	CTAG	2 cut(s)	372, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.