Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0001498

Physical Location & Seq

Genomic Coordinates Forward (+)

3778580 .. 3781079

Gene Structure 2500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g04330.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTCTCACTTCGGTAGGTCTGGCCCTCCGGACATCTCCGACACCTACTCTCTCCTCGTCCTCAACATCACATTCCGTACGAGTGCTGATGATCTGTTTCCACTTTTCGATAAGTACGGCAAGGTTGTTGACGTCTTCGTCCCCAGAGACCGAAGGACTGGGGAGTCGAGGGGCTTTGCTTTTGTGCGATACAAATATGCGGATGAGGCTCAGAAAGCAGTTGAAAGGCTTGATGGAAGAGTTGTTGATGGCCGCGAGATAACTGTTCAGTTTGCAAAATATGGGCCAAATGCAGAGAGGATTCATAAAGGAAGGATTTCTGAAGCTCTACCAAAATCGAGGCACAAGTCAAGAAGTCGCAGTCCTCGGAGAAGGTACCGAGATGACTACAGAGACCGTGGCTACATGAGGAGAAGTCGCAGTAGGAGTTGGGACAGGTATGACCGTGACAGATACCATGGGAGGGATAGAGACTATCGCCGACGAAGCAGGAGCCGCAATGCCAGTCCTGATTACTACAGGGGCAGGGGAAGGGGGCGCTATGATGATGAAAGTCGGAGTCTAAGTCCGTATCGGAGTCCACATCGAAGTTGTTCTATTGATAGTGCCTCCCCTGCTCGGCATAGCCCTAGTCCTCGTAGGAGCCGCAGTGCCAGCCCTGATAGATGTAGTCGTGATGGACAATTCCCAACCTCTCAAAGTGCTTCACTACGCCATCGTCCTGCTGATTCTCAAAGCCCATCCCCTCGAAATTCAGATGTTAATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

257

Amino Acids

29.92

Weight (kDa)

10.73

Isoelectric Point (pI)

89.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64200 AT5G64200
fragaria_vesca	FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_6g21680
malus_domestica	MD08G1182200.v1.1 MD14G1052000.v1.1 MD15G1367900.v1.1
prunus_persica	Prupe.1G516100_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1
pyrus_communis	pycom08g15600 pycom12g04670 pycom14g04330 pycom15g32980
rosa_chinensis	RchiOBHm_Chr3g0478961 RchiOBHm_Chr7g0239081
rosa_laevigata	RLG00000000784 RLG00000023616
rosa_multiflora	Rmu_sc0004605.1_g000002 Rmu_sc0005645.1_g000001 Rmu_sc0012163.1_g000002
rosa_roxburghii	Rroxscaffold_3G00221270 Rroxscaffold_6G00402870
rosa_rugosa	Rorug03G0169300 Rorug03G0169400 Rorug03G0169400 Rorug03G0169400 Rorug03G0169500 Rorug03G0169600 Rorug07G0325500 Rorug07G0325600 Rorug07G0325700 Rorug07G0325800
rosa_samantha	Rh3AG220800 Rh3BG252800 Rh3CG249500 Rh3DG245500 Rh7AG480000 Rh7CG497500 Rh7DG465100
rosa_wichuraiana	Rw3G019860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	137, 163
AatII	GACGTC	1 cut(s)	135
Acc65I	GGTACC	1 cut(s)	375
AccB1I	GGYRCC	1 cut(s)	375
AccII	CGCG	1 cut(s)	255
AccIII	TCCGGA	1 cut(s)	28
AciI	CCGC	4 cut(s)	200, 253, 496, 646
AcoI	YGGCCR	1 cut(s)	250
AcsI	RAATTY	1 cut(s)	751
AcuI	CTGAAG	1 cut(s)	342
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	3 cut(s)	79, 116, 377
AfiI	CCNNNNNNNGG	2 cut(s)	463, 618
AgsI	TTSAA	1 cut(s)	224
AluBI	AGCT	1 cut(s)	326
AluI	AGCT	1 cut(s)	326
Alw26I	GTCTC	4 cut(s)	9, 141, 387, 465
Aor13HI	TCCGGA	1 cut(s)	28
AoxI	GGCC	3 cut(s)	22, 250, 284
ApoI	RAATTY	1 cut(s)	751
Asp700I	GAANNNNTTC	2 cut(s)	316, 592
Asp718I	GGTACC	1 cut(s)	375
AspLEI	GCGC	1 cut(s)	540
AspS9I	GGNCC	2 cut(s)	23, 284
BanI	GGYRCC	1 cut(s)	375
BbsI	GAAGAC	1 cut(s)	127
BccI	CCATC	5 cut(s)	227, 242, 671, 723, 748
BceAI	ACGGC	1 cut(s)	133
BcoDI	GTCTC	4 cut(s)	9, 141, 387, 465
BfaI	CTAG	1 cut(s)	630
BfmI	CTRYAG	2 cut(s)	388, 517
BfoI	RGCGCY	1 cut(s)	541
BisI	GCNGC	3 cut(s)	253, 496, 646
BlsI	GCNGC	3 cut(s)	254, 497, 647
BmgT120I	GGNCC	2 cut(s)	23, 284
BmiI	GGNNCC	3 cut(s)	377, 494, 644
BmrI	ACTGGG	1 cut(s)	168
BmuI	ACTGGG	1 cut(s)	168
BpiI	GAAGAC	1 cut(s)	127
BsaHI	GRCGYC	1 cut(s)	132
BsaI	GGTCTC	2 cut(s)	141, 387
BsaJI	CCNNGG	3 cut(s)	365, 397, 457
BsaWI	WCCGGW	1 cut(s)	28
BsaXI	ACNNNNNCTCC	4 cut(s)	550, 580, 634, 664
Bsc4I	CCNNNNNNNGG	2 cut(s)	463, 618
Bse1I	ACTGG	2 cut(s)	163, 504
Bse3DI	GCAATG	1 cut(s)	505
BseAI	TCCGGA	1 cut(s)	28
BseDI	CCNNGG	3 cut(s)	365, 397, 457
BseGI	GGATG	2 cut(s)	208, 740
BseLI	CCNNNNNNNGG	2 cut(s)	463, 618
BseMI	GCAATG	1 cut(s)	505
BseMII	CTCAG	1 cut(s)	224
BseNI	ACTGG	2 cut(s)	163, 504
BseRI	GAGGAG	2 cut(s)	44, 424
Bsh1236I	CGCG	1 cut(s)	255
BshFI	GGCC	3 cut(s)	24, 252, 286
BshNI	GGYRCC	1 cut(s)	375
BsiSI	CCGG	1 cut(s)	29
BsiWI	CGTACG	1 cut(s)	77
BslFI	GGGAC	2 cut(s)	125, 446
BslI	CCNNNNNNNGG	2 cut(s)	463, 618
BsmAI	GTCTC	4 cut(s)	9, 141, 387, 465
BsmFI	GGGAC	2 cut(s)	125, 446
BsnI	GGCC	3 cut(s)	24, 252, 286
Bso31I	GGTCTC	2 cut(s)	141, 387
Bsp13I	TCCGGA	1 cut(s)	28
Bsp143I	GATC	1 cut(s)	91
Bsp19I	CCATGG	1 cut(s)	457
BspACI	CCGC	4 cut(s)	200, 253, 496, 646
BspANI	GGCC	3 cut(s)	24, 252, 286
BspCNI	CTCAG	1 cut(s)	223
BspEI	TCCGGA	1 cut(s)	28
BspFNI	CGCG	1 cut(s)	255
BspLI	GGNNCC	3 cut(s)	377, 494, 644
BspT107I	GGYRCC	1 cut(s)	375
BspTNI	GGTCTC	2 cut(s)	141, 387
BsrDI	GCAATG	1 cut(s)	505
BsrI	ACTGG	2 cut(s)	163, 504
BssECI	CCNNGG	3 cut(s)	365, 397, 457
BssMI	GATC	1 cut(s)	91
BssNI	GRCGYC	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	457
Bst4CI	ACNGT	3 cut(s)	265, 398, 446
Bst6I	CTCTTC	1 cut(s)	232
BstACI	GRCGYC	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	655
BstDEI	CTNAG	2 cut(s)	210, 563
BstDSI	CCRYGG	2 cut(s)	397, 457
BstF5I	GGATG	2 cut(s)	208, 740
BstFNI	CGCG	1 cut(s)	255
BstH2I	RGCGCY	1 cut(s)	541
BstHHI	GCGC	1 cut(s)	540
BstKTI	GATC	1 cut(s)	94
BstMAI	GTCTC	4 cut(s)	9, 141, 387, 465
BstMBI	GATC	1 cut(s)	91
BstMWI	GCNNNNNNNGC	6 cut(s)	206, 215, 486, 495, 614, 654
BstSFI	CTRYAG	2 cut(s)	388, 517
BstUI	CGCG	1 cut(s)	255
BstV2I	GAAGAC	1 cut(s)	127
BsuRI	GGCC	3 cut(s)	24, 252, 286
BtgI	CCRYGG	2 cut(s)	397, 457
BtsCI	GGATG	2 cut(s)	208, 740
BtsI	GCAGTG	1 cut(s)	655
BtsIMutI	CAGTG	1 cut(s)	655
Cac8I	GCNNGC	1 cut(s)	655
CfoI	GCGC	1 cut(s)	540
Cfr13I	GGNCC	2 cut(s)	23, 284
Csp6I	GTAC	3 cut(s)	78, 115, 376
CviAII	CATG	2 cut(s)	406, 458
CviQI	GTAC	3 cut(s)	78, 115, 376
DdeI	CTNAG	2 cut(s)	210, 563
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
DrdI	GACNNNNNNGTC	2 cut(s)	137, 163
DseDI	GACNNNNNNGTC	2 cut(s)	137, 163
EaeI	YGGCCR	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	232
EarI	CTCTTC	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	457
Eco31I	GGTCTC	2 cut(s)	141, 387
Eco57I	CTGAAG	1 cut(s)	342
EcoT14I	CCWWGG	1 cut(s)	457
ErhI	CCWWGG	1 cut(s)	457
FaeI	CATG	2 cut(s)	409, 461
FaiI	YATR	8 cut(s)	198, 282, 306, 407, 441, 459, 543, 624
FaqI	GGGAC	2 cut(s)	125, 446
FatI	CATG	2 cut(s)	405, 457
Fnu4HI	GCNGC	3 cut(s)	253, 496, 646
FokI	GGATG	2 cut(s)	215, 727
Fsp4HI	GCNGC	3 cut(s)	253, 496, 646
FspBI	CTAG	1 cut(s)	630
GlaI	GCGC	1 cut(s)	539
GluI	GCNGC	3 cut(s)	253, 496, 646
HaeII	RGCGCY	1 cut(s)	541
HaeIII	GGCC	3 cut(s)	24, 252, 286
HapII	CCGG	1 cut(s)	29
HhaI	GCGC	1 cut(s)	540
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	2 cut(s)	409, 461
Hin6I	GCGC	1 cut(s)	538
HinP1I	GCGC	1 cut(s)	538
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	5 cut(s)	164, 301, 559, 577, 728
HpaII	CCGG	1 cut(s)	29
Hpy166II	GTNNAC	2 cut(s)	130, 581
Hpy188I	TCNGA	7 cut(s)	40, 213, 322, 369, 558, 576, 757
Hpy188III	TCNNGA	4 cut(s)	29, 351, 509, 674
Hpy8I	GTNNAC	2 cut(s)	130, 581
Hpy99I	CGWCG	1 cut(s)	486
HpyAV	CCTTC	4 cut(s)	147, 306, 366, 525
HpyCH4III	ACNGT	3 cut(s)	265, 398, 446
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	2 cut(s)	275, 293
HpyF10VI	GCNNNNNNNGC	6 cut(s)	206, 215, 486, 495, 614, 654
HpyF3I	CTNAG	2 cut(s)	210, 563
HpySE526I	ACGT	1 cut(s)	132
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	2 cut(s)	409, 461
HspAI	GCGC	1 cut(s)	538
Kpn2I	TCCGGA	1 cut(s)	28
KpnI	GGTACC	1 cut(s)	379
Kzo9I	GATC	1 cut(s)	91
LmnI	GCTCC	2 cut(s)	492, 642
MaeI	CTAG	1 cut(s)	630
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MboII	GAAGA	2 cut(s)	127, 249
MluCI	AATT	2 cut(s)	683, 751
MlyI	GAGTC	3 cut(s)	173, 568, 586
MmeI	TCCRAC	2 cut(s)	63, 536
MroI	TCCGGA	1 cut(s)	28
MroXI	GAANNNNTTC	2 cut(s)	316, 592
MseI	TTAA	1 cut(s)	762
MspI	CCGG	1 cut(s)	29
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	6 cut(s)	206, 215, 486, 495, 614, 654
NcoI	CCATGG	1 cut(s)	457
NdeII	GATC	1 cut(s)	91
NlaIII	CATG	2 cut(s)	409, 461
NlaIV	GGNNCC	3 cut(s)	377, 494, 644
NmeAIII	GCCGAG	1 cut(s)	598
NmuCI	GTSAC	1 cut(s)	446
PdmI	GAANNNNTTC	2 cut(s)	316, 592
PfeI	GAWTC	2 cut(s)	301, 728
Pfl23II	CGTACG	1 cut(s)	77
PkrI	GCNGC	3 cut(s)	254, 497, 647
PleI	GAGTC	3 cut(s)	172, 567, 585
PpsI	GAGTC	3 cut(s)	172, 567, 585
PspLI	CGTACG	1 cut(s)	77
PspN4I	GGNNCC	3 cut(s)	377, 494, 644
PspPI	GGNCC	2 cut(s)	23, 284
RsaI	GTAC	3 cut(s)	79, 116, 377
RsaNI	GTAC	3 cut(s)	78, 115, 376
SaqAI	TTAA	1 cut(s)	762
SatI	GCNGC	3 cut(s)	253, 496, 646
Sau3AI	GATC	1 cut(s)	91
Sau96I	GGNCC	2 cut(s)	23, 284
SchI	GAGTC	3 cut(s)	173, 568, 586
SetI	ASST	8 cut(s)	20, 47, 126, 135, 328, 377, 440, 695
SfcI	CTRYAG	2 cut(s)	388, 517
Sse9I	AATT	2 cut(s)	683, 751
SsiI	CCGC	4 cut(s)	200, 253, 496, 646
SspMI	CTAG	1 cut(s)	630
StyI	CCWWGG	1 cut(s)	457
TaaI	ACNGT	3 cut(s)	265, 398, 446
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	5 cut(s)	108, 167, 338, 586, 748
TaqII	GACCGA	1 cut(s)	165
TasI	AATT	2 cut(s)	683, 751
TauI	GCSGC	3 cut(s)	255, 498, 648
TfiI	GAWTC	2 cut(s)	301, 728
Tru1I	TTAA	1 cut(s)	762
Tru9I	TTAA	1 cut(s)	762
TscAI	CASTG	1 cut(s)	655
TseFI	GTSAC	1 cut(s)	446
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	2 cut(s)	293, 564
TspGWI	ACGGA	2 cut(s)	65, 558
TspRI	CASTG	1 cut(s)	655
XapI	RAATTY	1 cut(s)	751
XmnI	GAANNNNTTC	2 cut(s)	316, 592
XspI	CTAG	1 cut(s)	630
ZraI	GACGTC	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.