Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001498

Physical Location & Seq

Genomic Coordinates Forward (+)

66930048 .. 66932381

Gene Structure 2334 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG497500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGTCGCACTTCGGCCGATCTGGACCGCCGGACATCAGAGACACCTACTCGCTCCTCGTTCTCAACATCACTTTCCGAACCACCGCCGACGATCTCTTCCCGCTGTTTGATAAGTACGGGAAGGTCGTCGACGTGTTTATCCCCCGAGACCGGAGGACCGGCGATTCGCGCGGCTTCGCTTTTGTGCGGTATAAGTATCAGGATGAGGCGGCCAAGGCCGTGGATAAGCTCGACGGGAGAGTTGTGGATGGGAGAGAGATTATGGTTCAGTTTGCTAAGTATGGTCCTAATGCTGAGAGGATTCACAAGGGAAAGATAAGTGAATCTTCCTCCAAGTTGAAAAGCAGGTCAAGAAGCCGTAGCCCTCGTCCAAGGTATCGAGATGAATACAAGGATAGGGATTACAAGAGGAGAAGTCGCAGTCGAAGTAGGGACAGATATGACCGTGACAGGCACCATAGGAGTGAAAGAGAGCATCGCTACAGAAGCAGGAGCCGCAGTGCAAGTCCTGATAATCGTAAAAGGAGCAAATATGATGACGAGCGTCGTAGTCGGAGTCGGTCCTATGGAAGTGTCTCACCTGCTCGGCCTAGCTCTAAATCTCGAAGGAGCCCCTCTCCTCGTAGGACACCTCCAAGGAGTGAGAGTCCTGATGCACGCCATCGTAATGACCGCACTCCTACCCCAAAAGATGTCTCACCACAGCCTCGGCGTGAGGATTCTCTAAGTCCTCGTAAATCTGATGCTGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

251

Amino Acids

29.6

Weight (kDa)

10.8

Isoelectric Point (pI)

90.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	18 - 87	4.3e-20	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64200 AT5G64200
fragaria_vesca	FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_6g21680
malus_domestica	MD08G1182200.v1.1 MD14G1052000.v1.1 MD15G1367900.v1.1
prunus_persica	Prupe.1G516100_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1
pyrus_communis	pycom08g15600 pycom12g04670 pycom14g04330 pycom15g32980
rosa_chinensis	RchiOBHm_Chr3g0478961 RchiOBHm_Chr7g0239081
rosa_laevigata	RLG00000000784 RLG00000023616
rosa_multiflora	Rmu_sc0004605.1_g000002 Rmu_sc0005645.1_g000001 Rmu_sc0012163.1_g000002
rosa_roxburghii	Rroxscaffold_3G00221270 Rroxscaffold_6G00402870
rosa_rugosa	Rorug03G0169300 Rorug03G0169400 Rorug03G0169400 Rorug03G0169400 Rorug03G0169500 Rorug03G0169600 Rorug07G0325500 Rorug07G0325600 Rorug07G0325700 Rorug07G0325800
rosa_samantha	Rh3AG220800 Rh3BG252800 Rh3CG249500 Rh3DG245500 Rh7AG480000 Rh7CG497500 Rh7DG465100
rosa_wichuraiana	Rw3G019860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	589
Acc36I	ACCTGC	2 cut(s)	336, 589
AccB1I	GGYRCC	1 cut(s)	453
AccI	GTMKAC	1 cut(s)	129
AccII	CGCG	2 cut(s)	169, 171
AciI	CCGC	8 cut(s)	26, 84, 101, 171, 187, 209, 496, 673
AcoI	YGGCCR	2 cut(s)	13, 210
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	1 cut(s)	150
AflIII	ACRYGT	1 cut(s)	132
AgsI	TTSAA	1 cut(s)	340
AjiI	CACGTC	1 cut(s)	133
AluBI	AGCT	2 cut(s)	229, 594
AluI	AGCT	2 cut(s)	229, 594
Alw26I	GTCTC	4 cut(s)	33, 141, 580, 700
Ama87I	CYCGRG	1 cut(s)	144
AoxI	GGCC	4 cut(s)	13, 210, 216, 587
ArsI	GACNNNNNNTTYG	2 cut(s)	148, 180
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	4 cut(s)	23, 156, 284, 561
AsuHPI	GGTGA	2 cut(s)	570, 690
AvaI	CYCGRG	1 cut(s)	144
AvaII	GGWCC	4 cut(s)	23, 156, 284, 561
BanI	GGYRCC	1 cut(s)	453
BanII	GRGCYC	1 cut(s)	614
BccI	CCATC	2 cut(s)	242, 669
BceAI	ACGGC	2 cut(s)	203, 342
BcoDI	GTCTC	4 cut(s)	33, 141, 580, 700
BfaI	CTAG	1 cut(s)	591
BfmI	CTRYAG	1 cut(s)	481
BfuAI	ACCTGC	2 cut(s)	336, 589
BisI	GCNGC	3 cut(s)	172, 210, 496
BlsI	GCNGC	3 cut(s)	173, 211, 497
Bme18I	GGWCC	4 cut(s)	23, 156, 284, 561
BmeT110I	CYCGRG	1 cut(s)	144
BmgBI	CACGTC	1 cut(s)	133
BmgT120I	GGNCC	4 cut(s)	23, 156, 284, 561
BmiI	GGNNCC	3 cut(s)	455, 494, 611
BmsI	GCATC	3 cut(s)	484, 643, 733
BoxI	GACNNNNGTC	1 cut(s)	543
BplI	GAGNNNNNCTC	2 cut(s)	601, 633
BsaI	GGTCTC	1 cut(s)	141
BsaJI	CCNNGG	5 cut(s)	213, 219, 371, 635, 707
BsaWI	WCCGGW	1 cut(s)	150
BsaXI	ACNNNNNCTCC	4 cut(s)	484, 514, 631, 661
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
Bse118I	RCCGGY	1 cut(s)	158
BseDI	CCNNGG	5 cut(s)	213, 219, 371, 635, 707
BseGI	GGATG	2 cut(s)	208, 253
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseMII	CTCAG	1 cut(s)	285
BseRI	GAGGAG	3 cut(s)	44, 424, 609
BseX3I	CGGCCG	1 cut(s)	13
Bsh1236I	CGCG	2 cut(s)	169, 171
Bsh1285I	CGRYCG	1 cut(s)	16
BshFI	GGCC	4 cut(s)	15, 212, 218, 589
BshNI	GGYRCC	1 cut(s)	453
BsiEI	CGRYCG	1 cut(s)	16
BsiHKCI	CYCGRG	1 cut(s)	144
BsiSI	CCGG	3 cut(s)	29, 151, 159
BslFI	GGGAC	1 cut(s)	446
BslI	CCNNNNNNNGG	1 cut(s)	150
BsmAI	GTCTC	4 cut(s)	33, 141, 580, 700
BsmFI	GGGAC	1 cut(s)	446
BsnI	GGCC	4 cut(s)	15, 212, 218, 589
Bso31I	GGTCTC	1 cut(s)	141
BsoBI	CYCGRG	1 cut(s)	144
Bsp1286I	GDGCHC	1 cut(s)	614
Bsp143I	GATC	2 cut(s)	17, 91
BspACI	CCGC	8 cut(s)	26, 84, 101, 171, 187, 209, 496, 673
BspANI	GGCC	4 cut(s)	15, 212, 218, 589
BspCNI	CTCAG	1 cut(s)	286
BspFNI	CGCG	2 cut(s)	169, 171
BspLI	GGNNCC	3 cut(s)	455, 494, 611
BspMI	ACCTGC	2 cut(s)	336, 589
BspT107I	GGYRCC	1 cut(s)	453
BspTNI	GGTCTC	1 cut(s)	141
BsrFI	RCCGGY	1 cut(s)	158
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	5 cut(s)	213, 219, 371, 635, 707
BssMI	GATC	2 cut(s)	17, 91
BssT1I	CCWWGG	3 cut(s)	213, 371, 635
Bst4CI	ACNGT	1 cut(s)	446
Bst6I	CTCTTC	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	658
BstDEI	CTNAG	3 cut(s)	276, 294, 725
BstDSI	CCRYGG	1 cut(s)	219
BstF5I	GGATG	2 cut(s)	208, 253
BstFNI	CGCG	2 cut(s)	169, 171
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	2 cut(s)	20, 94
BstMAI	GTCTC	4 cut(s)	33, 141, 580, 700
BstMBI	GATC	2 cut(s)	17, 91
BstMCI	CGRYCG	1 cut(s)	16
BstMWI	GCNNNNNNNGC	4 cut(s)	168, 215, 486, 495
BstPAI	GACNNNNGTC	1 cut(s)	543
BstSFI	CTRYAG	1 cut(s)	481
BstUI	CGCG	2 cut(s)	169, 171
BstXI	CCANNNNNNTGG	1 cut(s)	220
BstZI	CGGCCG	1 cut(s)	13
BsuRI	GGCC	4 cut(s)	15, 212, 218, 589
BtgI	CCRYGG	1 cut(s)	219
BtgZI	GCGATG	1 cut(s)	461
BtrI	CACGTC	1 cut(s)	133
BtsCI	GGATG	2 cut(s)	208, 253
BtsI	GCAGTG	1 cut(s)	505
BtsIMutI	CAGTG	1 cut(s)	505
BveI	ACCTGC	2 cut(s)	336, 589
Cac8I	GCNNGC	1 cut(s)	658
CfoI	GCGC	1 cut(s)	171
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	4 cut(s)	23, 156, 284, 561
CseI	GACGC	1 cut(s)	533
Csp6I	GTAC	1 cut(s)	115
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	3 cut(s)	276, 294, 725
DpnI	GATC	2 cut(s)	19, 93
DpnII	GATC	2 cut(s)	17, 91
EaeI	YGGCCR	2 cut(s)	13, 210
EagI	CGGCCG	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
EclXI	CGGCCG	1 cut(s)	13
Eco130I	CCWWGG	3 cut(s)	213, 371, 635
Eco24I	GRGCYC	1 cut(s)	614
Eco31I	GGTCTC	1 cut(s)	141
Eco47I	GGWCC	4 cut(s)	23, 156, 284, 561
Eco52I	CGGCCG	1 cut(s)	13
Eco88I	CYCGRG	1 cut(s)	144
EcoT14I	CCWWGG	3 cut(s)	213, 371, 635
EcoT38I	GRGCYC	1 cut(s)	614
ErhI	CCWWGG	3 cut(s)	213, 371, 635
FaiI	YATR	7 cut(s)	192, 263, 282, 441, 459, 534, 567
FalI	AAGNNNNNCTT	2 cut(s)	310, 342
FaqI	GGGAC	1 cut(s)	446
FauI	CCCGC	1 cut(s)	108
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	3 cut(s)	172, 210, 496
FokI	GGATG	2 cut(s)	215, 260
FriOI	GRGCYC	1 cut(s)	614
Fsp4HI	GCNGC	3 cut(s)	172, 210, 496
FspBI	CTAG	1 cut(s)	591
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	3 cut(s)	172, 210, 496
HaeIII	GGCC	4 cut(s)	15, 212, 218, 589
HapII	CCGG	3 cut(s)	29, 151, 159
HgaI	GACGC	1 cut(s)	533
HhaI	GCGC	1 cut(s)	171
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	6 cut(s)	164, 301, 323, 556, 646, 719
HpaII	CCGG	3 cut(s)	29, 151, 159
HphI	GGTGA	2 cut(s)	570, 690
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	4 cut(s)	38, 77, 555, 742
Hpy188III	TCNNGA	7 cut(s)	21, 200, 351, 380, 509, 603, 650
Hpy8I	GTNNAC	1 cut(s)	130
Hpy99I	CGWCG	5 cut(s)	92, 131, 134, 236, 549
HpyAV	CCTTC	2 cut(s)	115, 600
HpyCH4III	ACNGT	1 cut(s)	446
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	2 cut(s)	503, 656
HpyF10VI	GCNNNNNNNGC	4 cut(s)	168, 215, 486, 495
HpyF3I	CTNAG	3 cut(s)	276, 294, 725
HpySE526I	ACGT	1 cut(s)	132
HspAI	GCGC	1 cut(s)	169
Kzo9I	GATC	2 cut(s)	17, 91
LmnI	GCTCC	4 cut(s)	57, 492, 525, 609
LweI	GCATC	3 cut(s)	484, 643, 733
MaeI	CTAG	1 cut(s)	591
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	2 cut(s)	19, 93
MboI	GATC	2 cut(s)	17, 91
MboII	GAAGA	2 cut(s)	88, 318
MhlI	GDGCHC	1 cut(s)	614
MlyI	GAGTC	2 cut(s)	565, 655
MmeI	TCCRAC	1 cut(s)	533
MslI	CAYNNNNRTG	2 cut(s)	462, 666
MspA1I	CMGCKG	1 cut(s)	103
MspI	CCGG	3 cut(s)	29, 151, 159
MvnI	CGCG	2 cut(s)	169, 171
MwoI	GCNNNNNNNGC	4 cut(s)	168, 215, 486, 495
NdeII	GATC	2 cut(s)	17, 91
NlaIV	GGNNCC	3 cut(s)	455, 494, 611
NmeAIII	GCCGAG	2 cut(s)	565, 688
NmuCI	GTSAC	1 cut(s)	446
PaqCI	CACCTGC	1 cut(s)	589
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PfeI	GAWTC	4 cut(s)	164, 301, 323, 719
PkrI	GCNGC	3 cut(s)	173, 211, 497
PleI	GAGTC	2 cut(s)	564, 654
PpsI	GAGTC	2 cut(s)	564, 654
PshAI	GACNNNNGTC	1 cut(s)	543
PspN4I	GGNNCC	3 cut(s)	455, 494, 611
PspPI	GGNCC	4 cut(s)	23, 156, 284, 561
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
RseI	CAYNNNNRTG	2 cut(s)	462, 666
SalI	GTCGAC	1 cut(s)	128
SatI	GCNGC	3 cut(s)	172, 210, 496
Sau3AI	GATC	2 cut(s)	17, 91
Sau96I	GGNCC	4 cut(s)	23, 156, 284, 561
SchI	GAGTC	2 cut(s)	565, 655
SduI	GDGCHC	1 cut(s)	614
SetI	ASST	9 cut(s)	47, 126, 135, 231, 350, 377, 583, 596, 634
SfaNI	GCATC	3 cut(s)	484, 643, 733
SfcI	CTRYAG	1 cut(s)	481
SgrDI	CGTCGACG	1 cut(s)	128
SinI	GGWCC	4 cut(s)	23, 156, 284, 561
SmiMI	CAYNNNNRTG	2 cut(s)	462, 666
SsiI	CCGC	8 cut(s)	26, 84, 101, 171, 187, 209, 496, 673
SspMI	CTAG	1 cut(s)	591
StyI	CCWWGG	3 cut(s)	213, 371, 635
TaaI	ACNGT	1 cut(s)	446
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	5 cut(s)	129, 231, 379, 424, 604
TaqII	GACCGA	1 cut(s)	549
TauI	GCSGC	3 cut(s)	174, 212, 498
TfiI	GAWTC	4 cut(s)	164, 301, 323, 719
TscAI	CASTG	1 cut(s)	505
TseFI	GTSAC	1 cut(s)	446
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	1 cut(s)	399
TspRI	CASTG	1 cut(s)	505
VpaK11BI	GGWCC	4 cut(s)	23, 156, 284, 561
XmiI	GTMKAC	1 cut(s)	129
XspI	CTAG	1 cut(s)	591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.