Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001498

Physical Location & Seq

Genomic Coordinates Forward (+)

27570534 .. 27574088

Gene Structure 3555 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g37470.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGTCGCACTTCGGACGATCCGGACCGCCGGACATCAGAGACACCTACTCCCTCCTCGTCCTCAACATCACTTTCCGTACCACCGCCGACGACCTCTTCCCGCTGTTTGACAAGTACGGCAAGGTCGTCGACGTGTTTATCCCCCGCGACCGGAGGACCGGCGACTCGCGCGGCTTCGCTTTTGTGCGGTACAAGTATCAGGATGAGGCGGCTAAGGCCGTGGATAAGCTCGACGGGAGAGTTGTGGATGGAAGAGAGATTATGGTTCAGTTTGCTAAGTATGGTCCAAATGCTGAGAGGATTCACAAGGGGAAAATTAGTGAATCTTCCTCCAAGTTGAAGAGCAGGTCCAGAAGCCGGAGCCCTCGTCCAAGGTATCGAGATGAATACAAAGATAGGGATTACAGGAGAAGAAGTCGCAGTCGTAGTAGGGACAGATACGACCGTGACAGGCACCATAGGAGTGAAAGAGAGCATCGCTACAGAAGCAGGAGCCGCAGTGCAAGTCCTGATAATCGTAGAAGGAGCAAATATGATGACGAGCGGCGTAGTCGAAGCCGGTCCTATGGAAGTGTCTCACCTGCTCGGCCTAGCTCTAAATCTCGAAGGAGCCCCTCTCCTCGTAGGACACCTCCAAGGAGTGAGAGTCCGGATGCACGCAACCGCAACGAACGCTCTCCTAGCCCCAGAGATGTTTCACCACAGCCTCGGCGTGAAGATTCTCCAAGTCCTCGTAAATCTGATGTCGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

252

Amino Acids

29.65

Weight (kDa)

10.97

Isoelectric Point (pI)

101.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	18 - 87	4.6e-20	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64200 AT5G64200
fragaria_vesca	FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_6g21680
malus_domestica	MD08G1182200.v1.1 MD14G1052000.v1.1 MD15G1367900.v1.1
prunus_persica	Prupe.1G516100_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1
pyrus_communis	pycom08g15600 pycom12g04670 pycom14g04330 pycom15g32980
rosa_chinensis	RchiOBHm_Chr3g0478961 RchiOBHm_Chr7g0239081
rosa_laevigata	RLG00000000784 RLG00000023616
rosa_multiflora	Rmu_sc0004605.1_g000002 Rmu_sc0005645.1_g000001 Rmu_sc0012163.1_g000002
rosa_roxburghii	Rroxscaffold_3G00221270 Rroxscaffold_6G00402870
rosa_rugosa	Rorug03G0169300 Rorug03G0169400 Rorug03G0169400 Rorug03G0169400 Rorug03G0169500 Rorug03G0169600 Rorug07G0325500 Rorug07G0325600 Rorug07G0325700 Rorug07G0325800
rosa_samantha	Rh3AG220800 Rh3BG252800 Rh3CG249500 Rh3DG245500 Rh7AG480000 Rh7CG497500 Rh7DG465100
rosa_wichuraiana	Rw3G019860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	589
Acc36I	ACCTGC	2 cut(s)	336, 589
AccB1I	GGYRCC	1 cut(s)	453
AccBSI	CCGCTC	1 cut(s)	544
AccI	GTMKAC	1 cut(s)	129
AccII	CGCG	3 cut(s)	147, 169, 171
AccIII	TCCGGA	2 cut(s)	20, 649
AclWI	GGATC	1 cut(s)	12
AfaI	GTAC	3 cut(s)	79, 116, 191
AfiI	CCNNNNNNNGG	2 cut(s)	150, 357
AflIII	ACRYGT	1 cut(s)	132
AgsI	TTSAA	1 cut(s)	340
AjiI	CACGTC	1 cut(s)	133
AluBI	AGCT	2 cut(s)	229, 594
AluI	AGCT	2 cut(s)	229, 594
Alw26I	GTCTC	2 cut(s)	33, 580
AlwI	GGATC	1 cut(s)	12
Aor13HI	TCCGGA	2 cut(s)	20, 649
AoxI	GGCC	2 cut(s)	216, 587
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	5 cut(s)	23, 156, 284, 348, 561
AsuHPI	GGTGA	2 cut(s)	570, 690
AvaII	GGWCC	5 cut(s)	23, 156, 284, 348, 561
BaeI	ACNNNNGTAYC	2 cut(s)	430, 463
BanI	GGYRCC	1 cut(s)	453
BanII	GRGCYC	2 cut(s)	365, 614
BccI	CCATC	1 cut(s)	242
BceAI	ACGGC	2 cut(s)	133, 203
BcgI	CGANNNNNNTGC	2 cut(s)	109, 143
BcoDI	GTCTC	2 cut(s)	33, 580
BfaI	CTAG	2 cut(s)	591, 681
BfmI	CTRYAG	1 cut(s)	481
BfuAI	ACCTGC	2 cut(s)	336, 589
BisI	GCNGC	4 cut(s)	172, 210, 496, 545
BlsI	GCNGC	4 cut(s)	173, 211, 497, 546
Bme18I	GGWCC	5 cut(s)	23, 156, 284, 348, 561
BmgBI	CACGTC	1 cut(s)	133
BmgT120I	GGNCC	5 cut(s)	23, 156, 284, 348, 561
BmiI	GGNNCC	4 cut(s)	362, 455, 494, 611
BmsI	GCATC	2 cut(s)	484, 643
BplI	GAGNNNNNCTC	2 cut(s)	601, 633
Bpu10I	CCTNAGC	1 cut(s)	213
BsaJI	CCNNGG	4 cut(s)	219, 371, 635, 707
BsaWI	WCCGGW	3 cut(s)	20, 150, 649
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 357
Bse118I	RCCGGY	2 cut(s)	158, 558
BseAI	TCCGGA	2 cut(s)	20, 649
BseDI	CCNNGG	4 cut(s)	219, 371, 635, 707
BseGI	GGATG	3 cut(s)	208, 253, 658
BseLI	CCNNNNNNNGG	2 cut(s)	150, 357
BseMII	CTCAG	1 cut(s)	285
BseRI	GAGGAG	2 cut(s)	44, 609
Bsh1236I	CGCG	3 cut(s)	147, 169, 171
Bsh1285I	CGRYCG	2 cut(s)	151, 445
BshFI	GGCC	2 cut(s)	218, 589
BshNI	GGYRCC	1 cut(s)	453
BsiEI	CGRYCG	2 cut(s)	151, 445
BsiSI	CCGG	7 cut(s)	21, 29, 151, 159, 358, 559, 650
BslFI	GGGAC	1 cut(s)	446
BslI	CCNNNNNNNGG	2 cut(s)	150, 357
BsmAI	GTCTC	2 cut(s)	33, 580
BsmFI	GGGAC	1 cut(s)	446
BsnI	GGCC	2 cut(s)	218, 589
Bsp1286I	GDGCHC	2 cut(s)	365, 614
Bsp13I	TCCGGA	2 cut(s)	20, 649
Bsp143I	GATC	1 cut(s)	17
BspANI	GGCC	2 cut(s)	218, 589
BspCNI	CTCAG	1 cut(s)	286
BspEI	TCCGGA	2 cut(s)	20, 649
BspFNI	CGCG	3 cut(s)	147, 169, 171
BspLI	GGNNCC	4 cut(s)	362, 455, 494, 611
BspMI	ACCTGC	2 cut(s)	336, 589
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	335
BspT107I	GGYRCC	1 cut(s)	453
BsrBI	CCGCTC	1 cut(s)	544
BsrFI	RCCGGY	2 cut(s)	158, 558
BssAI	RCCGGY	2 cut(s)	158, 558
BssECI	CCNNGG	4 cut(s)	219, 371, 635, 707
BssMI	GATC	1 cut(s)	17
BssT1I	CCWWGG	2 cut(s)	371, 635
Bst4CI	ACNGT	1 cut(s)	446
Bst6I	CTCTTC	3 cut(s)	101, 247, 335
BstC8I	GCNNGC	1 cut(s)	658
BstDEI	CTNAG	3 cut(s)	213, 276, 294
BstDSI	CCRYGG	1 cut(s)	219
BstF5I	GGATG	3 cut(s)	208, 253, 658
BstFNI	CGCG	3 cut(s)	147, 169, 171
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	1 cut(s)	20
BstMAI	GTCTC	2 cut(s)	33, 580
BstMBI	GATC	1 cut(s)	17
BstMCI	CGRYCG	2 cut(s)	151, 445
BstMWI	GCNNNNNNNGC	6 cut(s)	168, 215, 486, 495, 672, 681
BstSFI	CTRYAG	1 cut(s)	481
BstUI	CGCG	3 cut(s)	147, 169, 171
BsuRI	GGCC	2 cut(s)	218, 589
BtgI	CCRYGG	1 cut(s)	219
BtgZI	GCGATG	1 cut(s)	461
BtrI	CACGTC	1 cut(s)	133
BtsCI	GGATG	3 cut(s)	208, 253, 658
BtsI	GCAGTG	1 cut(s)	505
BtsIMutI	CAGTG	1 cut(s)	505
BveI	ACCTGC	2 cut(s)	336, 589
Cac8I	GCNNGC	1 cut(s)	658
CfoI	GCGC	1 cut(s)	171
Cfr10I	RCCGGY	2 cut(s)	158, 558
Cfr13I	GGNCC	5 cut(s)	23, 156, 284, 348, 561
CpoI	CGGWCCG	1 cut(s)	23
Csp6I	GTAC	3 cut(s)	78, 115, 190
CspI	CGGWCCG	1 cut(s)	23
CviQI	GTAC	3 cut(s)	78, 115, 190
DdeI	CTNAG	3 cut(s)	213, 276, 294
DpnI	GATC	1 cut(s)	19
DpnII	GATC	1 cut(s)	17
Eam1104I	CTCTTC	3 cut(s)	101, 247, 335
EarI	CTCTTC	3 cut(s)	101, 247, 335
Eco130I	CCWWGG	2 cut(s)	371, 635
Eco24I	GRGCYC	2 cut(s)	365, 614
Eco47I	GGWCC	5 cut(s)	23, 156, 284, 348, 561
EcoT14I	CCWWGG	2 cut(s)	371, 635
EcoT38I	GRGCYC	2 cut(s)	365, 614
ErhI	CCWWGG	2 cut(s)	371, 635
FaiI	YATR	5 cut(s)	263, 282, 459, 534, 567
FaqI	GGGAC	1 cut(s)	446
FauI	CCCGC	2 cut(s)	108, 152
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	4 cut(s)	172, 210, 496, 545
FokI	GGATG	3 cut(s)	215, 260, 665
FriOI	GRGCYC	2 cut(s)	365, 614
Fsp4HI	GCNGC	4 cut(s)	172, 210, 496, 545
FspBI	CTAG	2 cut(s)	591, 681
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	4 cut(s)	172, 210, 496, 545
HaeIII	GGCC	2 cut(s)	218, 589
HapII	CCGG	7 cut(s)	21, 29, 151, 159, 358, 559, 650
HhaI	GCGC	1 cut(s)	171
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	5 cut(s)	164, 301, 323, 646, 719
HpaII	CCGG	7 cut(s)	21, 29, 151, 159, 358, 559, 650
HphI	GGTGA	2 cut(s)	570, 690
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	3 cut(s)	14, 38, 742
Hpy188III	TCNNGA	7 cut(s)	21, 200, 351, 380, 509, 603, 650
Hpy8I	GTNNAC	1 cut(s)	130
Hpy99I	CGWCG	4 cut(s)	92, 131, 134, 236
HpyAV	CCTTC	2 cut(s)	516, 600
HpyCH4III	ACNGT	1 cut(s)	446
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	2 cut(s)	503, 656
HpyF10VI	GCNNNNNNNGC	6 cut(s)	168, 215, 486, 495, 672, 681
HpyF3I	CTNAG	3 cut(s)	213, 276, 294
HpySE526I	ACGT	1 cut(s)	132
HspAI	GCGC	1 cut(s)	169
Kpn2I	TCCGGA	2 cut(s)	20, 649
Kzo9I	GATC	1 cut(s)	17
LguI	GCTCTTC	1 cut(s)	335
LmnI	GCTCC	4 cut(s)	360, 492, 525, 609
LweI	GCATC	2 cut(s)	484, 643
MaeI	CTAG	2 cut(s)	591, 681
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	1 cut(s)	19
MbiI	CCGCTC	1 cut(s)	544
MboI	GATC	1 cut(s)	17
MboII	GAAGA	6 cut(s)	88, 264, 318, 352, 423, 728
MhlI	GDGCHC	2 cut(s)	365, 614
MluCI	AATT	1 cut(s)	315
MlyI	GAGTC	2 cut(s)	158, 655
MroI	TCCGGA	2 cut(s)	20, 649
MslI	CAYNNNNRTG	1 cut(s)	462
MspA1I	CMGCKG	1 cut(s)	103
MspI	CCGG	7 cut(s)	21, 29, 151, 159, 358, 559, 650
MvnI	CGCG	3 cut(s)	147, 169, 171
MwoI	GCNNNNNNNGC	6 cut(s)	168, 215, 486, 495, 672, 681
NdeII	GATC	1 cut(s)	17
NlaIV	GGNNCC	4 cut(s)	362, 455, 494, 611
NmeAIII	GCCGAG	2 cut(s)	565, 688
NmuCI	GTSAC	1 cut(s)	446
PaqCI	CACCTGC	1 cut(s)	589
PciSI	GCTCTTC	1 cut(s)	335
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PfeI	GAWTC	3 cut(s)	301, 323, 719
PkrI	GCNGC	4 cut(s)	173, 211, 497, 546
PleI	GAGTC	2 cut(s)	158, 654
PpsI	GAGTC	2 cut(s)	158, 654
PspN4I	GGNNCC	4 cut(s)	362, 455, 494, 611
PspPI	GGNCC	5 cut(s)	23, 156, 284, 348, 561
RsaI	GTAC	3 cut(s)	79, 116, 191
RsaNI	GTAC	3 cut(s)	78, 115, 190
RseI	CAYNNNNRTG	1 cut(s)	462
Rsr2I	CGGWCCG	1 cut(s)	23
RsrII	CGGWCCG	1 cut(s)	23
SalI	GTCGAC	1 cut(s)	128
SapI	GCTCTTC	1 cut(s)	335
SatI	GCNGC	4 cut(s)	172, 210, 496, 545
Sau3AI	GATC	1 cut(s)	17
Sau96I	GGNCC	5 cut(s)	23, 156, 284, 348, 561
SchI	GAGTC	2 cut(s)	158, 655
SduI	GDGCHC	2 cut(s)	365, 614
SfaNI	GCATC	2 cut(s)	484, 643
SfcI	CTRYAG	1 cut(s)	481
SgrDI	CGTCGACG	1 cut(s)	128
SinI	GGWCC	5 cut(s)	23, 156, 284, 348, 561
SmiMI	CAYNNNNRTG	1 cut(s)	462
Sse9I	AATT	1 cut(s)	315
SspMI	CTAG	2 cut(s)	591, 681
StyI	CCWWGG	2 cut(s)	371, 635
TaaI	ACNGT	1 cut(s)	446
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	6 cut(s)	129, 231, 379, 553, 604, 747
TasI	AATT	1 cut(s)	315
TauI	GCSGC	4 cut(s)	174, 212, 498, 547
TfiI	GAWTC	3 cut(s)	301, 323, 719
TscAI	CASTG	1 cut(s)	505
TseFI	GTSAC	1 cut(s)	446
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	1 cut(s)	399
TspGWI	ACGGA	1 cut(s)	65
TspRI	CASTG	1 cut(s)	505
VpaK11BI	GGWCC	5 cut(s)	23, 156, 284, 348, 561
XmiI	GTMKAC	1 cut(s)	129
XspI	CTAG	2 cut(s)	591, 681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.