Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001498

Physical Location & Seq

Genomic Coordinates Forward (+)

34066777 .. 34067252

Gene Structure 476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0325800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGCAAGTGTTTTGCATCTGTAAAGGTGCTCTGGCTATCATAGTGGCTAATCCAACAGACCTTGTAAAGGTTCGACTCCAAGCTGAAGGAAAATTACCCGGCGGAGTTCCTAGGCATTACTCTGGAGCTAAAGATACTTATTTCACTATAGCGAGGCAGGAAGGTTTAGGAGCTCTATGGACTGGGCTGGGACCAAATGTAGCACGAAATGCTATTATAAATGCTGCTGAGCTAGCTAGTTATGATCAAGTGGAGGAGGTAATTGCTTTCAATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

92

Amino Acids

9.83

Weight (kDa)

6.54

Isoelectric Point (pI)

24.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	7 - 88	3.9e-18	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64200 AT5G64200
fragaria_vesca	FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_6g21680
malus_domestica	MD08G1182200.v1.1 MD14G1052000.v1.1 MD15G1367900.v1.1
prunus_persica	Prupe.1G516100_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1
pyrus_communis	pycom08g15600 pycom12g04670 pycom14g04330 pycom15g32980
rosa_chinensis	RchiOBHm_Chr3g0478961 RchiOBHm_Chr7g0239081
rosa_laevigata	RLG00000000784 RLG00000023616
rosa_multiflora	Rmu_sc0004605.1_g000002 Rmu_sc0005645.1_g000001 Rmu_sc0012163.1_g000002
rosa_roxburghii	Rroxscaffold_3G00221270 Rroxscaffold_6G00402870
rosa_rugosa	Rorug03G0169300 Rorug03G0169400 Rorug03G0169400 Rorug03G0169400 Rorug03G0169500 Rorug03G0169600 Rorug07G0325500 Rorug07G0325600 Rorug07G0325700 Rorug07G0325800
rosa_samantha	Rh3AG220800 Rh3BG252800 Rh3CG249500 Rh3DG245500 Rh7AG480000 Rh7CG497500 Rh7DG465100
rosa_wichuraiana	Rw3G019860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	218
AciI	CCGC	1 cut(s)	102
AcuI	CTGAAG	1 cut(s)	105
AfiI	CCNNNNNNNGG	1 cut(s)	67
AgsI	TTSAA	1 cut(s)	271
AluBI	AGCT	5 cut(s)	83, 128, 173, 232, 236
AluI	AGCT	5 cut(s)	83, 128, 173, 232, 236
Alw21I	GWGCWC	2 cut(s)	31, 175
ApeKI	GCWGC	1 cut(s)	224
AspA2I	CCTAGG	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	191
AsuC2I	CCSGG	1 cut(s)	99
AsuNHI	GCTAGC	1 cut(s)	232
AvaII	GGWCC	1 cut(s)	191
AvrII	CCTAGG	1 cut(s)	110
BanII	GRGCYC	1 cut(s)	175
BarI	GAAGNNNNNNTAC	2 cut(s)	78, 110
Bbv12I	GWGCWC	2 cut(s)	31, 175
BbvI	GCAGC	1 cut(s)	211
BclI	TGATCA	1 cut(s)	244
BcnI	CCSGG	1 cut(s)	99
BfaI	CTAG	3 cut(s)	111, 233, 237
BfmI	CTRYAG	1 cut(s)	147
BisI	GCNGC	1 cut(s)	225
BlnI	CCTAGG	1 cut(s)	110
BlpI	GCTNAGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	226
Bme1390I	CCNGG	1 cut(s)	99
Bme18I	GGWCC	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	191
BmiI	GGNNCC	1 cut(s)	192
BmrFI	CCNGG	1 cut(s)	99
BmrI	ACTGGG	1 cut(s)	192
BmsI	GCATC	1 cut(s)	24
BmtI	GCTAGC	1 cut(s)	236
BmuI	ACTGGG	1 cut(s)	192
BpmI	CTGGAG	1 cut(s)	144
Bpu1102I	GCTNAGC	1 cut(s)	228
BpuMI	CCSGG	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	187
BseDI	CCNNGG	1 cut(s)	110
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	187
BseRI	GAGGAG	1 cut(s)	269
BseXI	GCAGC	1 cut(s)	211
BseYI	CCCAGC	1 cut(s)	187
BsiHKAI	GWGCWC	2 cut(s)	31, 175
BsiSI	CCGG	1 cut(s)	99
BslFI	GGGAC	1 cut(s)	204
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmFI	GGGAC	1 cut(s)	204
Bsp1286I	GDGCHC	2 cut(s)	31, 175
Bsp143I	GATC	1 cut(s)	244
Bsp1720I	GCTNAGC	1 cut(s)	228
BspACI	CCGC	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	192
BspOI	GCTAGC	1 cut(s)	236
BsrI	ACTGG	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	110
BssMI	GATC	1 cut(s)	244
BssT1I	CCWWGG	1 cut(s)	110
BstAPI	GCANNNNNTGC	1 cut(s)	209
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	1 cut(s)	228
BstENI	CCTNNNNNAGG	1 cut(s)	65
BstKTI	GATC	1 cut(s)	247
BstMBI	GATC	1 cut(s)	244
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 233
BstSCI	CCNGG	1 cut(s)	97
BstSFI	CTRYAG	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	234
Cfr13I	GGNCC	1 cut(s)	191
CviJI	RGCY	8 cut(s)	35, 47, 83, 128, 173, 187, 232, 236
CviKI_1	RGCY	8 cut(s)	35, 47, 83, 128, 173, 187, 232, 236
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
EciI	GGCGGA	1 cut(s)	117
Ecl136II	GAGCTC	1 cut(s)	173
Eco130I	CCWWGG	1 cut(s)	110
Eco24I	GRGCYC	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	191
Eco53kI	GAGCTC	1 cut(s)	173
Eco57I	CTGAAG	1 cut(s)	105
EcoICRI	GAGCTC	1 cut(s)	173
EcoNI	CCTNNNNNAGG	1 cut(s)	65
EcoT14I	CCWWGG	1 cut(s)	110
EcoT38I	GRGCYC	1 cut(s)	175
ErhI	CCWWGG	1 cut(s)	110
FaiI	YATR	5 cut(s)	41, 149, 178, 218, 243
FaqI	GGGAC	1 cut(s)	204
FbaI	TGATCA	1 cut(s)	244
Fnu4HI	GCNGC	1 cut(s)	225
FriOI	GRGCYC	1 cut(s)	175
Fsp4HI	GCNGC	1 cut(s)	225
FspBI	CTAG	3 cut(s)	111, 233, 237
GluI	GCNGC	1 cut(s)	225
GsaI	CCCAGC	1 cut(s)	191
GsuI	CTGGAG	1 cut(s)	144
HapII	CCGG	1 cut(s)	99
HinfI	GANTC	1 cut(s)	75
HpaII	CCGG	1 cut(s)	99
Hpy188I	TCNGA	1 cut(s)	278
Hpy188III	TCNNGA	1 cut(s)	123
HpyAV	CCTTC	2 cut(s)	80, 155
HpyCH4V	TGCA	2 cut(s)	4, 15
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 233
HpyF3I	CTNAG	1 cut(s)	228
Ksp22I	TGATCA	1 cut(s)	244
Kzo9I	GATC	1 cut(s)	244
LmnI	GCTCC	2 cut(s)	125, 170
LpnPI	CCDG	6 cut(s)	17, 108, 112, 143, 168, 173
Lsp1109I	GCAGC	1 cut(s)	211
LweI	GCATC	1 cut(s)	24
MaeI	CTAG	3 cut(s)	111, 233, 237
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MhlI	GDGCHC	2 cut(s)	31, 175
MluCI	AATT	2 cut(s)	92, 261
MlyI	GAGTC	1 cut(s)	69
MmeI	TCCRAC	1 cut(s)	77
MnlI	CCTC	3 cut(s)	147, 247, 250
MspI	CCGG	1 cut(s)	99
MspR9I	CCNGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	2 cut(s)	209, 233
NciI	CCSGG	1 cut(s)	99
NdeII	GATC	1 cut(s)	244
NheI	GCTAGC	1 cut(s)	232
NlaIV	GGNNCC	1 cut(s)	192
PkrI	GCNGC	1 cut(s)	226
PleI	GAGTC	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	69
PsiI	TTATAA	1 cut(s)	218
Psp124BI	GAGCTC	1 cut(s)	175
PspFI	CCCAGC	1 cut(s)	187
PspN4I	GGNNCC	1 cut(s)	192
PspPI	GGNCC	1 cut(s)	191
SacI	GAGCTC	1 cut(s)	175
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	1 cut(s)	191
SchI	GAGTC	1 cut(s)	69
ScrFI	CCNGG	1 cut(s)	99
SduI	GDGCHC	2 cut(s)	31, 175
SfaNI	GCATC	1 cut(s)	24
SfcI	CTRYAG	1 cut(s)	147
SinI	GGWCC	1 cut(s)	191
Sse9I	AATT	2 cut(s)	92, 261
SsiI	CCGC	1 cut(s)	102
SspMI	CTAG	3 cut(s)	111, 233, 237
SstI	GAGCTC	1 cut(s)	175
StyD4I	CCNGG	1 cut(s)	97
StyI	CCWWGG	1 cut(s)	110
TaqI	TCGA	1 cut(s)	73
TasI	AATT	2 cut(s)	92, 261
TseI	GCWGC	1 cut(s)	224
VpaK11BI	GGWCC	1 cut(s)	191
XagI	CCTNNNNNAGG	1 cut(s)	65
XmaJI	CCTAGG	1 cut(s)	110
XspI	CTAG	3 cut(s)	111, 233, 237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.