Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001498

Physical Location & Seq

Genomic Coordinates Forward (+)

4983103 .. 4987649

Gene Structure 4547 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1052000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGTCTCACTTCGGTAGGTCTGGCCCTCCGGACATCACCGACACCTACTCTCTCCTCGTCCTCAACATCACCTTCCGTACGAGTGCTGATGATCTGTTTCCACTTTTCGATAAGTACGGCAAGGTTGTTGACGTCTTCGTCCCCAGGGACCGAAGATATGGGAATTCGACGCTTATGATCACCTGTTTACAGACTGGGGAGTCGAGGGGCTTTGCTTTTGTACGATACAAATATGCAGATGAGGCTCAGAAAGCAGTTGAAAGGCTTGATGGAAGAGTTGTTGATGGCCGCGAGATAACTGTTCAGTTTGCAAAATATGGGCCAAATGCAGAGAGGATTCATAAAGGAAGGATTTCTGAAGCTCTACCAAAATCAAGGCACAGGTCAAGAAGTCGCAGTCCTCGGAGAAGGTACCGAGATGACTTCAGAGACCGTGGCTACAGGAGAAGTCGCAGTAGGAGTTGGGACAGGTATGACCGTGACAGATACCATGGGAGGGATAGAGACTATCGCCGACGAAGCAGGAGCCGCAGTGCCAGTCCTGATTACTACAGGGGCAGGGGAAGGGGGCGCTATGATGATGAAAGGCGGAGTCTGAGTCCGTATCGGAGTCCACATCGAAGTCGTTCTATTGATAGTGCCTCCCCTGCTAGGCGTAGCCCTAGTCCTCGTAAGAGCCCTTCCCCACTAAGCAGGAGCCGCAGTGCCAGCCCTGATAGACGTAGTTGTGATGGACAATCCCCAACCTCTCGAAGTGCTTCACTACGCCATCGTCCTGCTGATTCTCAAAGCCCATCCCCTCGAAATTCAGATGTTGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

275

Amino Acids

31.92

Weight (kDa)

11.0

Isoelectric Point (pI)

100.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	18 - 100	2.3e-13	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64200 AT5G64200
fragaria_vesca	FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_6g21680
malus_domestica	MD08G1182200.v1.1 MD14G1052000.v1.1 MD15G1367900.v1.1
prunus_persica	Prupe.1G516100_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1
pyrus_communis	pycom08g15600 pycom12g04670 pycom14g04330 pycom15g32980
rosa_chinensis	RchiOBHm_Chr3g0478961 RchiOBHm_Chr7g0239081
rosa_laevigata	RLG00000000784 RLG00000023616
rosa_multiflora	Rmu_sc0004605.1_g000002 Rmu_sc0005645.1_g000001 Rmu_sc0012163.1_g000002
rosa_roxburghii	Rroxscaffold_3G00221270 Rroxscaffold_6G00402870
rosa_rugosa	Rorug03G0169300 Rorug03G0169400 Rorug03G0169400 Rorug03G0169400 Rorug03G0169500 Rorug03G0169600 Rorug07G0325500 Rorug07G0325600 Rorug07G0325700 Rorug07G0325800
rosa_samantha	Rh3AG220800 Rh3BG252800 Rh3CG249500 Rh3DG245500 Rh7AG480000 Rh7CG497500 Rh7DG465100
rosa_wichuraiana	Rw3G019860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	137, 199
AatII	GACGTC	1 cut(s)	135
Acc65I	GGTACC	1 cut(s)	411
AccB1I	GGYRCC	1 cut(s)	411
AccII	CGCG	1 cut(s)	291
AccIII	TCCGGA	1 cut(s)	28
AciI	CCGC	4 cut(s)	289, 529, 589, 700
AcoI	YGGCCR	1 cut(s)	286
AcsI	RAATTY	2 cut(s)	163, 805
AcuI	CTGAAG	2 cut(s)	378, 409
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	4 cut(s)	79, 116, 222, 413
AfiI	CCNNNNNNNGG	2 cut(s)	496, 651
AgsI	TTSAA	1 cut(s)	260
AjnI	CCWGG	1 cut(s)	143
AluBI	AGCT	1 cut(s)	362
AluI	AGCT	1 cut(s)	362
Alw26I	GTCTC	3 cut(s)	9, 423, 498
Aor13HI	TCCGGA	1 cut(s)	28
AoxI	GGCC	3 cut(s)	22, 286, 320
ApoI	RAATTY	2 cut(s)	163, 805
Asp700I	GAANNNNTTC	3 cut(s)	352, 625, 757
Asp718I	GGTACC	1 cut(s)	411
AspLEI	GCGC	1 cut(s)	573
AspS9I	GGNCC	3 cut(s)	23, 148, 320
AsuHPI	GGTGA	3 cut(s)	28, 61, 172
AvaII	GGWCC	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	411
BanII	GRGCYC	1 cut(s)	680
BarI	GAAGNNNNNNTAC	2 cut(s)	664, 696
BbsI	GAAGAC	1 cut(s)	127
BccI	CCATC	5 cut(s)	263, 278, 725, 777, 802
BceAI	ACGGC	1 cut(s)	133
BciT130I	CCWGG	1 cut(s)	145
BclI	TGATCA	1 cut(s)	177
BcoDI	GTCTC	3 cut(s)	9, 423, 498
BfaI	CTAG	2 cut(s)	651, 663
BfmI	CTRYAG	2 cut(s)	439, 550
BfoI	RGCGCY	1 cut(s)	574
BisI	GCNGC	3 cut(s)	289, 529, 700
BlsI	GCNGC	3 cut(s)	290, 530, 701
Bme1390I	CCNGG	1 cut(s)	145
Bme18I	GGWCC	1 cut(s)	148
BmgT120I	GGNCC	3 cut(s)	23, 148, 320
BmiI	GGNNCC	4 cut(s)	149, 413, 527, 698
BmrFI	CCNGG	1 cut(s)	145
BmrI	ACTGGG	1 cut(s)	204
BmuI	ACTGGG	1 cut(s)	204
BpiI	GAAGAC	1 cut(s)	127
BsaHI	GRCGYC	1 cut(s)	132
BsaI	GGTCTC	1 cut(s)	423
BsaJI	CCNNGG	5 cut(s)	143, 144, 401, 433, 490
BsaWI	WCCGGW	1 cut(s)	28
BsaXI	ACNNNNNCTCC	6 cut(s)	517, 547, 583, 613, 688, 718
Bsc4I	CCNNNNNNNGG	2 cut(s)	496, 651
Bse1I	ACTGG	2 cut(s)	199, 537
BseAI	TCCGGA	1 cut(s)	28
BseBI	CCWGG	1 cut(s)	145
BseDI	CCNNGG	5 cut(s)	143, 144, 401, 433, 490
BseGI	GGATG	1 cut(s)	794
BseLI	CCNNNNNNNGG	2 cut(s)	496, 651
BseMII	CTCAG	2 cut(s)	260, 587
BseNI	ACTGG	2 cut(s)	199, 537
BseRI	GAGGAG	1 cut(s)	44
Bsh1236I	CGCG	1 cut(s)	291
BshFI	GGCC	3 cut(s)	24, 288, 322
BshNI	GGYRCC	1 cut(s)	411
BsiSI	CCGG	1 cut(s)	29
BsiWI	CGTACG	1 cut(s)	77
BslFI	GGGAC	3 cut(s)	125, 161, 479
BslI	CCNNNNNNNGG	2 cut(s)	496, 651
BsmAI	GTCTC	3 cut(s)	9, 423, 498
BsmFI	GGGAC	3 cut(s)	125, 161, 479
BsnI	GGCC	3 cut(s)	24, 288, 322
Bso31I	GGTCTC	1 cut(s)	423
Bsp1286I	GDGCHC	1 cut(s)	680
Bsp13I	TCCGGA	1 cut(s)	28
Bsp143I	GATC	2 cut(s)	91, 177
Bsp19I	CCATGG	1 cut(s)	490
BspACI	CCGC	4 cut(s)	289, 529, 589, 700
BspANI	GGCC	3 cut(s)	24, 288, 322
BspCNI	CTCAG	2 cut(s)	259, 588
BspEI	TCCGGA	1 cut(s)	28
BspFNI	CGCG	1 cut(s)	291
BspLI	GGNNCC	4 cut(s)	149, 413, 527, 698
BspT107I	GGYRCC	1 cut(s)	411
BspTNI	GGTCTC	1 cut(s)	423
BsrI	ACTGG	2 cut(s)	199, 537
BssECI	CCNNGG	5 cut(s)	143, 144, 401, 433, 490
BssMI	GATC	2 cut(s)	91, 177
BssNI	GRCGYC	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	490
Bst2UI	CCWGG	1 cut(s)	145
Bst4CI	ACNGT	3 cut(s)	301, 434, 479
Bst6I	CTCTTC	1 cut(s)	268
BstACI	GRCGYC	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	709
BstDEI	CTNAG	3 cut(s)	246, 596, 689
BstDSI	CCRYGG	2 cut(s)	433, 490
BstF5I	GGATG	1 cut(s)	794
BstFNI	CGCG	1 cut(s)	291
BstH2I	RGCGCY	1 cut(s)	574
BstHHI	GCGC	1 cut(s)	573
BstKTI	GATC	2 cut(s)	94, 180
BstMAI	GTCTC	3 cut(s)	9, 423, 498
BstMBI	GATC	2 cut(s)	91, 177
BstMWI	GCNNNNNNNGC	7 cut(s)	242, 251, 519, 528, 647, 699, 708
BstNI	CCWGG	1 cut(s)	145
BstSCI	CCNGG	1 cut(s)	143
BstSFI	CTRYAG	2 cut(s)	439, 550
BstUI	CGCG	1 cut(s)	291
BstV2I	GAAGAC	1 cut(s)	127
BsuRI	GGCC	3 cut(s)	24, 288, 322
BtgI	CCRYGG	2 cut(s)	433, 490
BtsCI	GGATG	1 cut(s)	794
BtsI	GCAGTG	2 cut(s)	538, 709
BtsIMutI	CAGTG	2 cut(s)	538, 709
Cac8I	GCNNGC	1 cut(s)	709
CfoI	GCGC	1 cut(s)	573
Cfr13I	GGNCC	3 cut(s)	23, 148, 320
CseI	GACGC	1 cut(s)	178
Csp6I	GTAC	4 cut(s)	78, 115, 221, 412
CviAII	CATG	1 cut(s)	491
CviQI	GTAC	4 cut(s)	78, 115, 221, 412
DdeI	CTNAG	3 cut(s)	246, 596, 689
DpnI	GATC	2 cut(s)	93, 179
DpnII	GATC	2 cut(s)	91, 177
DrdI	GACNNNNNNGTC	2 cut(s)	137, 199
DseDI	GACNNNNNNGTC	2 cut(s)	137, 199
EaeI	YGGCCR	1 cut(s)	286
Eam1104I	CTCTTC	1 cut(s)	268
EarI	CTCTTC	1 cut(s)	268
EciI	GGCGGA	1 cut(s)	604
Eco130I	CCWWGG	1 cut(s)	490
Eco24I	GRGCYC	1 cut(s)	680
Eco31I	GGTCTC	1 cut(s)	423
Eco47I	GGWCC	1 cut(s)	148
Eco57I	CTGAAG	2 cut(s)	378, 409
EcoRI	GAATTC	1 cut(s)	163
EcoRII	CCWGG	1 cut(s)	143
EcoT14I	CCWWGG	1 cut(s)	490
EcoT38I	GRGCYC	1 cut(s)	680
ErhI	CCWWGG	1 cut(s)	490
FaeI	CATG	1 cut(s)	494
FaiI	YATR	8 cut(s)	159, 176, 234, 318, 342, 474, 492, 576
FaqI	GGGAC	3 cut(s)	125, 161, 479
FatI	CATG	1 cut(s)	490
FbaI	TGATCA	1 cut(s)	177
Fnu4HI	GCNGC	3 cut(s)	289, 529, 700
FokI	GGATG	1 cut(s)	781
FriOI	GRGCYC	1 cut(s)	680
Fsp4HI	GCNGC	3 cut(s)	289, 529, 700
FspBI	CTAG	2 cut(s)	651, 663
GlaI	GCGC	1 cut(s)	572
GluI	GCNGC	3 cut(s)	289, 529, 700
HaeII	RGCGCY	1 cut(s)	574
HaeIII	GGCC	3 cut(s)	24, 288, 322
HapII	CCGG	1 cut(s)	29
HgaI	GACGC	1 cut(s)	178
HhaI	GCGC	1 cut(s)	573
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	1 cut(s)	494
Hin6I	GCGC	1 cut(s)	571
HinP1I	GCGC	1 cut(s)	571
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	6 cut(s)	200, 337, 592, 598, 610, 782
HpaII	CCGG	1 cut(s)	29
HphI	GGTGA	3 cut(s)	28, 61, 172
Hpy166II	GTNNAC	3 cut(s)	130, 188, 614
Hpy188I	TCNGA	7 cut(s)	249, 358, 405, 428, 597, 609, 811
Hpy188III	TCNNGA	4 cut(s)	29, 387, 542, 750
Hpy8I	GTNNAC	3 cut(s)	130, 188, 614
Hpy99I	CGWCG	2 cut(s)	172, 519
HpyAV	CCTTC	5 cut(s)	82, 342, 402, 558, 690
HpyCH4III	ACNGT	3 cut(s)	301, 434, 479
HpyCH4IV	ACGT	2 cut(s)	132, 721
HpyCH4V	TGCA	3 cut(s)	236, 311, 329
HpyF10VI	GCNNNNNNNGC	7 cut(s)	242, 251, 519, 528, 647, 699, 708
HpyF3I	CTNAG	3 cut(s)	246, 596, 689
HpySE526I	ACGT	2 cut(s)	132, 721
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	1 cut(s)	494
HspAI	GCGC	1 cut(s)	571
Kpn2I	TCCGGA	1 cut(s)	28
KpnI	GGTACC	1 cut(s)	415
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	2 cut(s)	91, 177
LmnI	GCTCC	2 cut(s)	525, 696
MaeI	CTAG	2 cut(s)	651, 663
MaeII	ACGT	2 cut(s)	132, 721
MaeIII	GTNAC	1 cut(s)	479
MalI	GATC	2 cut(s)	93, 179
MboI	GATC	2 cut(s)	91, 177
MboII	GAAGA	3 cut(s)	127, 165, 285
MhlI	GDGCHC	1 cut(s)	680
MluCI	AATT	2 cut(s)	163, 805
MlyI	GAGTC	4 cut(s)	209, 601, 607, 619
MroI	TCCGGA	1 cut(s)	28
MroXI	GAANNNNTTC	3 cut(s)	352, 625, 757
MspI	CCGG	1 cut(s)	29
MspR9I	CCNGG	1 cut(s)	145
MvaI	CCWGG	1 cut(s)	145
MvnI	CGCG	1 cut(s)	291
MwoI	GCNNNNNNNGC	7 cut(s)	242, 251, 519, 528, 647, 699, 708
NcoI	CCATGG	1 cut(s)	490
NdeII	GATC	2 cut(s)	91, 177
NlaIII	CATG	1 cut(s)	494
NlaIV	GGNNCC	4 cut(s)	149, 413, 527, 698
NmuCI	GTSAC	1 cut(s)	479
PasI	CCCWGGG	1 cut(s)	144
PdmI	GAANNNNTTC	3 cut(s)	352, 625, 757
PfeI	GAWTC	2 cut(s)	337, 782
Pfl23II	CGTACG	1 cut(s)	77
PkrI	GCNGC	3 cut(s)	290, 530, 701
PleI	GAGTC	4 cut(s)	208, 600, 606, 618
PpsI	GAGTC	4 cut(s)	208, 600, 606, 618
Psp6I	CCWGG	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	143
PspLI	CGTACG	1 cut(s)	77
PspN4I	GGNNCC	4 cut(s)	149, 413, 527, 698
PspPI	GGNCC	3 cut(s)	23, 148, 320
RsaI	GTAC	4 cut(s)	79, 116, 222, 413
RsaNI	GTAC	4 cut(s)	78, 115, 221, 412
SatI	GCNGC	3 cut(s)	289, 529, 700
Sau3AI	GATC	2 cut(s)	91, 177
Sau96I	GGNCC	3 cut(s)	23, 148, 320
SchI	GAGTC	4 cut(s)	209, 601, 607, 619
ScrFI	CCNGG	1 cut(s)	145
SduI	GDGCHC	1 cut(s)	680
SfcI	CTRYAG	2 cut(s)	439, 550
SinI	GGWCC	1 cut(s)	148
Sse9I	AATT	2 cut(s)	163, 805
SsiI	CCGC	4 cut(s)	289, 529, 589, 700
SspMI	CTAG	2 cut(s)	651, 663
StyD4I	CCNGG	1 cut(s)	143
StyI	CCWWGG	1 cut(s)	490
TaaI	ACNGT	3 cut(s)	301, 434, 479
TaiI	ACGT	2 cut(s)	135, 724
TaqI	TCGA	6 cut(s)	108, 167, 203, 619, 751, 802
TaqII	GACCGA	1 cut(s)	165
TasI	AATT	2 cut(s)	163, 805
TauI	GCSGC	3 cut(s)	291, 531, 702
TfiI	GAWTC	2 cut(s)	337, 782
TscAI	CASTG	2 cut(s)	538, 709
TseFI	GTSAC	1 cut(s)	479
Tsp45I	GTSAC	1 cut(s)	479
TspDTI	ATGAA	2 cut(s)	329, 597
TspGWI	ACGGA	2 cut(s)	65, 591
TspRI	CASTG	2 cut(s)	538, 709
VpaK11BI	GGWCC	1 cut(s)	148
XapI	RAATTY	2 cut(s)	163, 805
XmnI	GAANNNNTTC	3 cut(s)	352, 625, 757
XspI	CTAG	2 cut(s)	651, 663
ZraI	GACGTC	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.