Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001498

Physical Location & Seq

Genomic Coordinates Reverse (-)

25332270 .. 25336367

Gene Structure 4098 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00402870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGTCTCACTTCGGAAGGTCTGGCCCTCCCGACATCACCGATACCTACTCTCTTCTCGTCCTCAACATCACCTTCCGGACGAGTGCGGATGATCTGTTTCCGCTTTTCGATAAGTACGGCAAGGTGGTCGACATCTTCATCCCTAGAGACCGAAGGACTGGCGAGTCCAGGGGATTTGCTTTTGTGCGATACAAATATGCAGATGAGGCACAGAAAGCAGTTGAGAGGCTCGATGGAAGAGTTGTTGATGGTCGTGAAATAACTGTTCAGTTTGCAAAATATGGGCCTAATGCAGAGAGGATTCATAAAGGAAGGATTACTGAAACTCTACCAAAATCGAGGCATAGGTCAAGAAGTCCCAGTCCTCGGAGAAGGTACCGTGATGACTATAGAGATCGGGACTACAGGAGGAGAAGTCGCAGTAGGAGTTGGGATAGGTATGAGCGTGACAGATACAACCATGGTAGGGACAGATACCACCATAGACGAAGCAGGAGCCCTAGTGCCAGTCCTGATTACTACAGGAGCAGGGGAAGAGGACGCTATGATGATGATGATGATGATGATGATGATTATGATAGGCGGAGGCGGAGTCGGAGTCGGAGTCCAATTCAAAGGCGTTCTTTTGATAGTGCATCCCCTGCTCGGCGTAGCCTTACACCTCTAAGGAGCCTTTCTCCGTTAAGCAGAAGCCGCAGTGTCAGCCCTTATGGACATGGTCGTGATGGACGATCGCCTAATTCTCGAAGTGTTTCACCACGAGGTCGTCCTGCTGATTCTCGAAGTCCATCCCCTCGACATTCAGATGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

271

Amino Acids

31.98

Weight (kDa)

10.78

Isoelectric Point (pI)

99.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	18 - 88	2.3e-19	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64200 AT5G64200
fragaria_vesca	FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_6g21680
malus_domestica	MD08G1182200.v1.1 MD14G1052000.v1.1 MD15G1367900.v1.1
prunus_persica	Prupe.1G516100_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1
pyrus_communis	pycom08g15600 pycom12g04670 pycom14g04330 pycom15g32980
rosa_chinensis	RchiOBHm_Chr3g0478961 RchiOBHm_Chr7g0239081
rosa_laevigata	RLG00000000784 RLG00000023616
rosa_multiflora	Rmu_sc0004605.1_g000002 Rmu_sc0005645.1_g000001 Rmu_sc0012163.1_g000002
rosa_roxburghii	Rroxscaffold_3G00221270 Rroxscaffold_6G00402870
rosa_rugosa	Rorug03G0169300 Rorug03G0169400 Rorug03G0169400 Rorug03G0169400 Rorug03G0169500 Rorug03G0169600 Rorug07G0325500 Rorug07G0325600 Rorug07G0325700 Rorug07G0325800
rosa_samantha	Rh3AG220800 Rh3BG252800 Rh3CG249500 Rh3DG245500 Rh7AG480000 Rh7CG497500 Rh7DG465100
rosa_wichuraiana	Rw3G019860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	163
Acc65I	GGTACC	1 cut(s)	375
AccB1I	GGYRCC	1 cut(s)	375
AccI	GTMKAC	1 cut(s)	129
AccIII	TCCGGA	1 cut(s)	75
AciI	CCGC	5 cut(s)	86, 101, 583, 589, 694
AfaI	GTAC	2 cut(s)	116, 377
AfiI	CCNNNNNNNGG	3 cut(s)	366, 466, 645
AgsI	TTSAA	1 cut(s)	614
AjnI	CCWGG	1 cut(s)	167
Alw26I	GTCTC	2 cut(s)	9, 141
Aor13HI	TCCGGA	1 cut(s)	75
AoxI	GGCC	2 cut(s)	22, 284
Asp700I	GAANNNNTTC	1 cut(s)	751
Asp718I	GGTACC	1 cut(s)	375
AspS9I	GGNCC	2 cut(s)	23, 284
AsuHPI	GGTGA	3 cut(s)	28, 61, 747
BanI	GGYRCC	1 cut(s)	375
BanII	GRGCYC	1 cut(s)	500
BauI	CACGAG	1 cut(s)	759
BccI	CCATC	4 cut(s)	227, 242, 719, 796
BceAI	ACGGC	1 cut(s)	133
BcgI	CGANNNNNNTGC	2 cut(s)	109, 143
BciT130I	CCWGG	1 cut(s)	169
BcoDI	GTCTC	2 cut(s)	9, 141
BfaI	CTAG	2 cut(s)	144, 501
BfmI	CTRYAG	3 cut(s)	388, 403, 520
BisI	GCNGC	1 cut(s)	694
BlsI	GCNGC	1 cut(s)	695
Bme1390I	CCNGG	1 cut(s)	169
BmgT120I	GGNCC	2 cut(s)	23, 284
BmiI	GGNNCC	3 cut(s)	377, 497, 671
BmrFI	CCNGG	1 cut(s)	169
BmrI	ACTGGG	1 cut(s)	354
BmsI	GCATC	1 cut(s)	644
BmuI	ACTGGG	1 cut(s)	354
BplI	GAGNNNNNCTC	2 cut(s)	661, 693
BsaI	GGTCTC	1 cut(s)	141
BsaJI	CCNNGG	3 cut(s)	168, 365, 460
BsaWI	WCCGGW	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	3 cut(s)	366, 466, 645
Bse1I	ACTGG	3 cut(s)	163, 360, 507
BseAI	TCCGGA	1 cut(s)	75
BseBI	CCWGG	1 cut(s)	169
BseDI	CCNNGG	3 cut(s)	168, 365, 460
BseGI	GGATG	4 cut(s)	94, 138, 635, 788
BseLI	CCNNNNNNNGG	3 cut(s)	366, 466, 645
BseNI	ACTGG	3 cut(s)	163, 360, 507
BseRI	GAGGAG	1 cut(s)	424
Bsh1285I	CGRYCG	1 cut(s)	734
BshFI	GGCC	2 cut(s)	24, 286
BshNI	GGYRCC	1 cut(s)	375
BsiEI	CGRYCG	1 cut(s)	734
BsiSI	CCGG	1 cut(s)	76
BslFI	GGGAC	3 cut(s)	342, 413, 482
BslI	CCNNNNNNNGG	3 cut(s)	366, 466, 645
BsmAI	GTCTC	2 cut(s)	9, 141
BsmFI	GGGAC	3 cut(s)	342, 413, 482
BsnI	GGCC	2 cut(s)	24, 286
Bso31I	GGTCTC	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	500
Bsp13I	TCCGGA	1 cut(s)	75
Bsp143I	GATC	3 cut(s)	91, 394, 731
Bsp19I	CCATGG	1 cut(s)	460
BspACI	CCGC	5 cut(s)	86, 101, 583, 589, 694
BspANI	GGCC	2 cut(s)	24, 286
BspEI	TCCGGA	1 cut(s)	75
BspLI	GGNNCC	3 cut(s)	377, 497, 671
BspT107I	GGYRCC	1 cut(s)	375
BspTNI	GGTCTC	1 cut(s)	141
BsrI	ACTGG	3 cut(s)	163, 360, 507
BssECI	CCNNGG	3 cut(s)	168, 365, 460
BssMI	GATC	3 cut(s)	91, 394, 731
BssSI	CACGAG	1 cut(s)	759
BssT1I	CCWWGG	1 cut(s)	460
Bst2BI	CACGAG	1 cut(s)	759
Bst2UI	CCWGG	1 cut(s)	169
Bst4CI	ACNGT	2 cut(s)	265, 380
Bst6I	CTCTTC	3 cut(s)	57, 232, 529
BstAPI	GCANNNNNTGC	1 cut(s)	641
BstDEI	CTNAG	1 cut(s)	665
BstDSI	CCRYGG	1 cut(s)	460
BstF5I	GGATG	4 cut(s)	94, 138, 635, 788
BstKTI	GATC	3 cut(s)	94, 397, 734
BstMAI	GTCTC	2 cut(s)	9, 141
BstMBI	GATC	3 cut(s)	91, 394, 731
BstMCI	CGRYCG	1 cut(s)	734
BstMWI	GCNNNNNNNGC	5 cut(s)	206, 215, 641, 693, 702
BstNI	CCWGG	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	167
BstSFI	CTRYAG	3 cut(s)	388, 403, 520
BsuRI	GGCC	2 cut(s)	24, 286
BtgI	CCRYGG	1 cut(s)	460
BtsCI	GGATG	4 cut(s)	94, 138, 635, 788
BtsI	GCAGTG	1 cut(s)	703
BtsIMutI	CAGTG	1 cut(s)	703
Cfr13I	GGNCC	2 cut(s)	23, 284
CseI	GACGC	1 cut(s)	549
Csp6I	GTAC	2 cut(s)	115, 376
CviAII	CATG	2 cut(s)	461, 716
CviJI	RGCY	8 cut(s)	24, 229, 286, 498, 654, 672, 693, 705
CviKI_1	RGCY	8 cut(s)	24, 229, 286, 498, 654, 672, 693, 705
CviQI	GTAC	2 cut(s)	115, 376
DdeI	CTNAG	1 cut(s)	665
DpnI	GATC	3 cut(s)	93, 396, 733
DpnII	GATC	3 cut(s)	91, 394, 731
DrdI	GACNNNNNNGTC	1 cut(s)	163
DseDI	GACNNNNNNGTC	1 cut(s)	163
Eam1104I	CTCTTC	3 cut(s)	57, 232, 529
EarI	CTCTTC	3 cut(s)	57, 232, 529
EciI	GGCGGA	2 cut(s)	598, 604
Eco130I	CCWWGG	1 cut(s)	460
Eco24I	GRGCYC	1 cut(s)	500
Eco31I	GGTCTC	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	167
EcoT14I	CCWWGG	1 cut(s)	460
EcoT38I	GRGCYC	1 cut(s)	500
ErhI	CCWWGG	1 cut(s)	460
FaeI	CATG	2 cut(s)	464, 719
FalI	AAGNNNNNCTT	2 cut(s)	607, 639
FaqI	GGGAC	3 cut(s)	342, 413, 482
FatI	CATG	2 cut(s)	460, 715
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	1 cut(s)	694
FokI	GGATG	4 cut(s)	101, 125, 622, 775
FriOI	GRGCYC	1 cut(s)	500
Fsp4HI	GCNGC	1 cut(s)	694
FspBI	CTAG	2 cut(s)	144, 501
GluI	GCNGC	1 cut(s)	694
HaeIII	GGCC	2 cut(s)	24, 286
HapII	CCGG	1 cut(s)	76
HgaI	GACGC	1 cut(s)	549
Hin1II	CATG	2 cut(s)	464, 719
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	6 cut(s)	164, 301, 592, 598, 604, 776
HpaII	CCGG	1 cut(s)	76
HphI	GGTGA	3 cut(s)	28, 61, 747
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	5 cut(s)	14, 369, 597, 603, 805
Hpy188III	TCNNGA	9 cut(s)	29, 76, 254, 351, 398, 512, 722, 744, 780
Hpy8I	GTNNAC	1 cut(s)	130
HpyAV	CCTTC	5 cut(s)	9, 82, 147, 306, 366
HpyCH4III	ACNGT	2 cut(s)	265, 380
HpyCH4V	TGCA	4 cut(s)	200, 275, 293, 635
HpyF10VI	GCNNNNNNNGC	5 cut(s)	206, 215, 641, 693, 702
HpyF3I	CTNAG	1 cut(s)	665
Hsp92II	CATG	2 cut(s)	464, 719
Kpn2I	TCCGGA	1 cut(s)	75
KpnI	GGTACC	1 cut(s)	379
Kzo9I	GATC	3 cut(s)	91, 394, 731
LmnI	GCTCC	3 cut(s)	495, 525, 669
LweI	GCATC	1 cut(s)	644
MaeI	CTAG	2 cut(s)	144, 501
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	3 cut(s)	93, 396, 733
MboI	GATC	3 cut(s)	91, 394, 731
MboII	GAAGA	4 cut(s)	44, 127, 249, 546
MhlI	GDGCHC	1 cut(s)	500
MluCI	AATT	2 cut(s)	609, 739
MlyI	GAGTC	4 cut(s)	173, 601, 607, 613
MmeI	TCCRAC	2 cut(s)	575, 581
MroI	TCCGGA	1 cut(s)	75
MroXI	GAANNNNTTC	1 cut(s)	751
MseI	TTAA	1 cut(s)	683
MslI	CAYNNNNRTG	2 cut(s)	720, 804
MspI	CCGG	1 cut(s)	76
MspR9I	CCNGG	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	169
MwoI	GCNNNNNNNGC	5 cut(s)	206, 215, 641, 693, 702
NcoI	CCATGG	1 cut(s)	460
NdeII	GATC	3 cut(s)	91, 394, 731
NlaIII	CATG	2 cut(s)	464, 719
NlaIV	GGNNCC	3 cut(s)	377, 497, 671
NmeAIII	GCCGAG	1 cut(s)	625
NmuCI	GTSAC	1 cut(s)	446
PcsI	WCGNNNNNNNCGW	1 cut(s)	727
PdmI	GAANNNNTTC	1 cut(s)	751
PfeI	GAWTC	2 cut(s)	301, 776
PflFI	GACNNNGTC	1 cut(s)	717
PkrI	GCNGC	1 cut(s)	695
Ple19I	CGATCG	1 cut(s)	734
PleI	GAGTC	4 cut(s)	172, 600, 606, 612
PpsI	GAGTC	4 cut(s)	172, 600, 606, 612
Psp6I	CCWGG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	167
PspN4I	GGNNCC	3 cut(s)	377, 497, 671
PspPI	GGNCC	2 cut(s)	23, 284
PsyI	GACNNNGTC	1 cut(s)	717
PvuI	CGATCG	1 cut(s)	734
RsaI	GTAC	2 cut(s)	116, 377
RsaNI	GTAC	2 cut(s)	115, 376
RseI	CAYNNNNRTG	2 cut(s)	720, 804
SalI	GTCGAC	1 cut(s)	128
SaqAI	TTAA	1 cut(s)	683
SatI	GCNGC	1 cut(s)	694
Sau3AI	GATC	3 cut(s)	91, 394, 731
Sau96I	GGNCC	2 cut(s)	23, 284
SchI	GAGTC	4 cut(s)	173, 601, 607, 613
ScrFI	CCNGG	1 cut(s)	169
SduI	GDGCHC	1 cut(s)	500
SetI	ASST	9 cut(s)	20, 47, 74, 126, 350, 377, 440, 664, 766
SfaNI	GCATC	1 cut(s)	644
SfcI	CTRYAG	3 cut(s)	388, 403, 520
SmiMI	CAYNNNNRTG	2 cut(s)	720, 804
Sse9I	AATT	2 cut(s)	609, 739
SsiI	CCGC	5 cut(s)	86, 101, 583, 589, 694
SspMI	CTAG	2 cut(s)	144, 501
StyD4I	CCNGG	1 cut(s)	167
StyI	CCWWGG	1 cut(s)	460
TaaI	ACNGT	2 cut(s)	265, 380
TaqI	TCGA	7 cut(s)	108, 129, 231, 338, 745, 781, 796
TaqII	GACCGA	1 cut(s)	165
TasI	AATT	2 cut(s)	609, 739
TauI	GCSGC	1 cut(s)	696
TfiI	GAWTC	2 cut(s)	301, 776
Tru1I	TTAA	1 cut(s)	683
Tru9I	TTAA	1 cut(s)	683
TscAI	CASTG	1 cut(s)	703
TseFI	GTSAC	1 cut(s)	446
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	2 cut(s)	127, 293
TspGWI	ACGGA	1 cut(s)	669
TspRI	CASTG	1 cut(s)	703
Tth111I	GACNNNGTC	1 cut(s)	717
XmiI	GTMKAC	1 cut(s)	129
XmnI	GAANNNNTTC	1 cut(s)	751
XspI	CTAG	2 cut(s)	144, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.