Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001498

Physical Location & Seq

Genomic Coordinates Forward (+)

4521189 .. 4524140

Gene Structure 2952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g04670.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGTCTCACTTCGGTAGGTCTGGCCCTCCGGACATCACCGACACCTACTCTCTCCTCGTCCTCAACATCACCTTCCGTACGAGCGCTGATGATCTGTTTCCGCTTTTCGATAAGTATGGCAAGGTTGTTGACATCTTCATCCCCAGAGACCGGAGGACTGGGGAGTCAAGGGGGTTTGCTTTTGTTCGATACAAATACGCAGATGAGGCTCAGAAAGCAGTTGAAAGGCTTGATGGGAGAGTTGTTGATGGCCGGGAGATAACTGTTCAGTTTGCTAAGTATGGGCCAAATGCAGAGAGGATTCATAAAGGAAGGATTTCTGAAGCTCTACCAAAATCAAGGTACAGGTCAAGAAGTCGCAGTCCTCGGAGAAGGTACCGAGATGACTACAGGGACCGTGGTTACAGGAGAAGTCGCAGTAGGAGTTGGGATAGGTATGACCGTGACAGATACCATGGGAGGGACAGAGACTACCGTCGACGAAGCAGGAGCCGTAGTGCCAGTCCTGATTACTACAGGATCAGGGGAAGGGGGTGCTATGATGAAAGGCGGAGTCTGACTCCATATAGGAGTCGGAGTCGGAGTCGTACTCTGAGTCCATATCGTGCCTCCCCTGCTCGGCGTAGCCCTAGTCCTCGTAAGAGCCCTTCCCCACTAAGCAGGAGCCGCAGTGCCAGCTCTGATAGACGTAGTCTTGATGGACAATCCCCAACCTCTCGAAGTGTTTCACCATGCCATCGTCCTGCTAATTCTCGAAGCCCATCCCCTCGAAATTTAGATTTTGATGTGAGATTGATATTGTTGTATGGAAACTATCATGGAAGCACCCTGAGTTGTGTACTTCTTGCAGCTCTGCTGATATCGGGGATCGATCTTGATCATCATGCTTGTTTCTTTTGGATCTTTTACGTGCTAGTTCTGTTCTGTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

311

Amino Acids

36.25

Weight (kDa)

10.76

Isoelectric Point (pI)

87.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64200 AT5G64200
fragaria_vesca	FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_6g21680
malus_domestica	MD08G1182200.v1.1 MD14G1052000.v1.1 MD15G1367900.v1.1
prunus_persica	Prupe.1G516100_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1
pyrus_communis	pycom08g15600 pycom12g04670 pycom14g04330 pycom15g32980
rosa_chinensis	RchiOBHm_Chr3g0478961 RchiOBHm_Chr7g0239081
rosa_laevigata	RLG00000000784 RLG00000023616
rosa_multiflora	Rmu_sc0004605.1_g000002 Rmu_sc0005645.1_g000001 Rmu_sc0012163.1_g000002
rosa_roxburghii	Rroxscaffold_3G00221270 Rroxscaffold_6G00402870
rosa_rugosa	Rorug03G0169300 Rorug03G0169400 Rorug03G0169400 Rorug03G0169400 Rorug03G0169500 Rorug03G0169600 Rorug07G0325500 Rorug07G0325600 Rorug07G0325700 Rorug07G0325800
rosa_samantha	Rh3AG220800 Rh3BG252800 Rh3CG249500 Rh3DG245500 Rh7AG480000 Rh7CG497500 Rh7DG465100
rosa_wichuraiana	Rw3G019860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	163
Acc65I	GGTACC	1 cut(s)	375
AccB1I	GGYRCC	1 cut(s)	375
AccI	GTMKAC	1 cut(s)	478
AccIII	TCCGGA	1 cut(s)	28
AciI	CCGC	3 cut(s)	101, 550, 667
AclWI	GGATC	3 cut(s)	527, 875, 908
AcoI	YGGCCR	1 cut(s)	250
AcsI	RAATTY	1 cut(s)	772
AcuI	CTGAAG	1 cut(s)	342
AfaI	GTAC	5 cut(s)	79, 344, 377, 589, 840
AfeI	AGCGCT	1 cut(s)	85
AfiI	CCNNNNNNNGG	3 cut(s)	150, 460, 618
AgsI	TTSAA	1 cut(s)	224
AluBI	AGCT	3 cut(s)	326, 678, 851
AluI	AGCT	3 cut(s)	326, 678, 851
Alw26I	GTCTC	3 cut(s)	9, 141, 462
AlwI	GGATC	3 cut(s)	527, 875, 908
Aor13HI	TCCGGA	1 cut(s)	28
Aor51HI	AGCGCT	1 cut(s)	85
AoxI	GGCC	3 cut(s)	22, 250, 284
ApeKI	GCWGC	1 cut(s)	848
ApoI	RAATTY	1 cut(s)	772
Asp700I	GAANNNNTTC	2 cut(s)	316, 724
Asp718I	GGTACC	1 cut(s)	375
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	3 cut(s)	23, 284, 394
AsuC2I	CCSGG	1 cut(s)	254
AsuHPI	GGTGA	3 cut(s)	28, 61, 720
AvaII	GGWCC	1 cut(s)	394
BanI	GGYRCC	1 cut(s)	375
BanII	GRGCYC	1 cut(s)	647
BarI	GAAGNNNNNNTAC	2 cut(s)	631, 663
BbvI	GCAGC	1 cut(s)	860
BccI	CCATC	5 cut(s)	227, 242, 692, 744, 769
BceAI	ACGGC	1 cut(s)	477
BclI	TGATCA	1 cut(s)	877
BcnI	CCSGG	1 cut(s)	254
BcoDI	GTCTC	3 cut(s)	9, 141, 462
BfaI	CTAG	2 cut(s)	630, 914
BfmI	CTRYAG	2 cut(s)	388, 514
BfoI	RGCGCY	1 cut(s)	87
BisI	GCNGC	2 cut(s)	667, 849
BlsI	GCNGC	2 cut(s)	668, 850
Bme1390I	CCNGG	1 cut(s)	254
Bme18I	GGWCC	1 cut(s)	394
BmgT120I	GGNCC	3 cut(s)	23, 284, 394
BmiI	GGNNCC	4 cut(s)	377, 395, 491, 665
BmrFI	CCNGG	1 cut(s)	254
BmrI	ACTGGG	1 cut(s)	168
BmuI	ACTGGG	1 cut(s)	168
BoxI	GACNNNNGTC	1 cut(s)	474
BplI	GAGNNNNNCTC	4 cut(s)	544, 576, 574, 606
BpuMI	CCSGG	1 cut(s)	254
Bsa29I	ATCGAT	1 cut(s)	870
BsaAI	YACGTR	1 cut(s)	910
BsaBI	GATNNNNATC	1 cut(s)	876
BsaI	GGTCTC	1 cut(s)	141
BsaJI	CCNNGG	3 cut(s)	365, 397, 454
BsaWI	WCCGGW	2 cut(s)	28, 150
BsaXI	ACNNNNNCTCC	8 cut(s)	481, 511, 562, 568, 592, 598, 655, 685
Bsc4I	CCNNNNNNNGG	3 cut(s)	150, 460, 618
Bse1I	ACTGG	2 cut(s)	163, 501
Bse8I	GATNNNNATC	1 cut(s)	876
BseAI	TCCGGA	1 cut(s)	28
BseCI	ATCGAT	1 cut(s)	870
BseDI	CCNNGG	3 cut(s)	365, 397, 454
BseGI	GGATG	2 cut(s)	138, 761
BseJI	GATNNNNATC	1 cut(s)	876
BseLI	CCNNNNNNNGG	3 cut(s)	150, 460, 618
BseMII	CTCAG	3 cut(s)	224, 584, 821
BseNI	ACTGG	2 cut(s)	163, 501
BseRI	GAGGAG	1 cut(s)	44
BseXI	GCAGC	1 cut(s)	860
BshFI	GGCC	3 cut(s)	24, 252, 286
BshNI	GGYRCC	1 cut(s)	375
BshVI	ATCGAT	1 cut(s)	870
BsiSI	CCGG	3 cut(s)	29, 151, 253
BsiWI	CGTACG	1 cut(s)	77
BslFI	GGGAC	2 cut(s)	407, 476
BslI	CCNNNNNNNGG	3 cut(s)	150, 460, 618
BsmAI	GTCTC	3 cut(s)	9, 141, 462
BsmFI	GGGAC	2 cut(s)	407, 476
BsnI	GGCC	3 cut(s)	24, 252, 286
Bso31I	GGTCTC	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	647
Bsp13I	TCCGGA	1 cut(s)	28
Bsp143I	GATC	6 cut(s)	91, 519, 867, 871, 877, 900
Bsp19I	CCATGG	1 cut(s)	454
BspACI	CCGC	3 cut(s)	101, 550, 667
BspANI	GGCC	3 cut(s)	24, 252, 286
BspCNI	CTCAG	3 cut(s)	223, 585, 822
BspDI	ATCGAT	1 cut(s)	870
BspEI	TCCGGA	1 cut(s)	28
BspLI	GGNNCC	4 cut(s)	377, 395, 491, 665
BspPI	GGATC	3 cut(s)	527, 875, 908
BspT107I	GGYRCC	1 cut(s)	375
BspTNI	GGTCTC	1 cut(s)	141
BsrI	ACTGG	2 cut(s)	163, 501
BssECI	CCNNGG	3 cut(s)	365, 397, 454
BssMI	GATC	6 cut(s)	91, 519, 867, 871, 877, 900
BssT1I	CCWWGG	1 cut(s)	454
Bst4CI	ACNGT	4 cut(s)	265, 398, 443, 476
BstBAI	YACGTR	1 cut(s)	910
BstC8I	GCNNGC	1 cut(s)	676
BstDEI	CTNAG	5 cut(s)	210, 276, 593, 656, 830
BstDSI	CCRYGG	2 cut(s)	397, 454
BstF5I	GGATG	2 cut(s)	138, 761
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	6 cut(s)	94, 522, 870, 874, 880, 903
BstMAI	GTCTC	3 cut(s)	9, 141, 462
BstMBI	GATC	6 cut(s)	91, 519, 867, 871, 877, 900
BstMWI	GCNNNNNNNGC	5 cut(s)	206, 215, 614, 666, 675
BstPAI	GACNNNNGTC	1 cut(s)	474
BstSCI	CCNGG	1 cut(s)	252
BstSFI	CTRYAG	2 cut(s)	388, 514
BstV1I	GCAGC	1 cut(s)	860
BstX2I	RGATCY	1 cut(s)	900
BstYI	RGATCY	1 cut(s)	900
Bsu15I	ATCGAT	1 cut(s)	870
BsuRI	GGCC	3 cut(s)	24, 252, 286
BsuTUI	ATCGAT	1 cut(s)	870
BtgI	CCRYGG	2 cut(s)	397, 454
BtsCI	GGATG	2 cut(s)	138, 761
BtsI	GCAGTG	1 cut(s)	676
BtsIMutI	CAGTG	1 cut(s)	676
Cac8I	GCNNGC	1 cut(s)	676
CfoI	GCGC	1 cut(s)	86
Cfr13I	GGNCC	3 cut(s)	23, 284, 394
ClaI	ATCGAT	1 cut(s)	870
Csp6I	GTAC	5 cut(s)	78, 343, 376, 588, 839
CviAII	CATG	4 cut(s)	455, 732, 818, 884
CviQI	GTAC	5 cut(s)	78, 343, 376, 588, 839
DdeI	CTNAG	5 cut(s)	210, 276, 593, 656, 830
DpnI	GATC	6 cut(s)	93, 521, 869, 873, 879, 902
DpnII	GATC	6 cut(s)	91, 519, 867, 871, 877, 900
DrdI	GACNNNNNNGTC	1 cut(s)	163
DseDI	GACNNNNNNGTC	1 cut(s)	163
EaeI	YGGCCR	1 cut(s)	250
EciI	GGCGGA	1 cut(s)	565
Eco130I	CCWWGG	1 cut(s)	454
Eco24I	GRGCYC	1 cut(s)	647
Eco31I	GGTCTC	1 cut(s)	141
Eco32I	GATATC	1 cut(s)	861
Eco47I	GGWCC	1 cut(s)	394
Eco47III	AGCGCT	1 cut(s)	85
Eco57I	CTGAAG	1 cut(s)	342
EcoRV	GATATC	1 cut(s)	861
EcoT14I	CCWWGG	1 cut(s)	454
EcoT38I	GRGCYC	1 cut(s)	647
ErhI	CCWWGG	1 cut(s)	454
FaeI	CATG	4 cut(s)	458, 735, 821, 887
FaqI	GGGAC	2 cut(s)	407, 476
FatI	CATG	4 cut(s)	454, 731, 817, 883
FbaI	TGATCA	1 cut(s)	877
FblI	GTMKAC	1 cut(s)	478
Fnu4HI	GCNGC	2 cut(s)	667, 849
FokI	GGATG	2 cut(s)	125, 748
FriOI	GRGCYC	1 cut(s)	647
Fsp4HI	GCNGC	2 cut(s)	667, 849
FspBI	CTAG	2 cut(s)	630, 914
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	2 cut(s)	667, 849
HaeII	RGCGCY	1 cut(s)	87
HaeIII	GGCC	3 cut(s)	24, 252, 286
HapII	CCGG	3 cut(s)	29, 151, 253
HhaI	GCGC	1 cut(s)	86
Hin1II	CATG	4 cut(s)	458, 735, 821, 887
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HincII	GTYRAC	2 cut(s)	130, 479
HindII	GTYRAC	2 cut(s)	130, 479
HinfI	GANTC	8 cut(s)	164, 301, 553, 559, 571, 577, 583, 595
HpaII	CCGG	3 cut(s)	29, 151, 253
HphI	GGTGA	3 cut(s)	28, 61, 720
Hpy166II	GTNNAC	3 cut(s)	130, 479, 839
Hpy188I	TCNGA	8 cut(s)	213, 322, 369, 558, 576, 582, 594, 682
Hpy188III	TCNNGA	8 cut(s)	29, 351, 506, 695, 717, 753, 875, 930
Hpy8I	GTNNAC	3 cut(s)	130, 479, 839
Hpy99I	CGWCG	2 cut(s)	480, 483
HpyAV	CCTTC	5 cut(s)	82, 306, 366, 522, 657
HpyCH4III	ACNGT	4 cut(s)	265, 398, 443, 476
HpyCH4IV	ACGT	2 cut(s)	688, 909
HpyCH4V	TGCA	2 cut(s)	293, 848
HpyF10VI	GCNNNNNNNGC	5 cut(s)	206, 215, 614, 666, 675
HpyF3I	CTNAG	5 cut(s)	210, 276, 593, 656, 830
HpySE526I	ACGT	2 cut(s)	688, 909
Hsp92II	CATG	4 cut(s)	458, 735, 821, 887
HspAI	GCGC	1 cut(s)	84
Kpn2I	TCCGGA	1 cut(s)	28
KpnI	GGTACC	1 cut(s)	379
Ksp22I	TGATCA	1 cut(s)	877
Kzo9I	GATC	6 cut(s)	91, 519, 867, 871, 877, 900
LmnI	GCTCC	2 cut(s)	489, 663
Lsp1109I	GCAGC	1 cut(s)	860
MaeI	CTAG	2 cut(s)	630, 914
MaeII	ACGT	2 cut(s)	688, 909
MaeIII	GTNAC	2 cut(s)	401, 443
MalI	GATC	6 cut(s)	93, 521, 869, 873, 879, 902
MboI	GATC	6 cut(s)	91, 519, 867, 871, 877, 900
MboII	GAAGA	1 cut(s)	127
MflI	RGATCY	1 cut(s)	900
MhlI	GDGCHC	1 cut(s)	647
MluCI	AATT	2 cut(s)	748, 772
MlyI	GAGTC	7 cut(s)	173, 553, 562, 580, 586, 592, 604
MmeI	TCCRAC	2 cut(s)	554, 560
MroI	TCCGGA	1 cut(s)	28
MroXI	GAANNNNTTC	2 cut(s)	316, 724
MspI	CCGG	3 cut(s)	29, 151, 253
MspR9I	CCNGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	5 cut(s)	206, 215, 614, 666, 675
NciI	CCSGG	1 cut(s)	254
NcoI	CCATGG	1 cut(s)	454
NdeII	GATC	6 cut(s)	91, 519, 867, 871, 877, 900
NlaIII	CATG	4 cut(s)	458, 735, 821, 887
NlaIV	GGNNCC	4 cut(s)	377, 395, 491, 665
NmeAIII	GCCGAG	1 cut(s)	598
NmuCI	GTSAC	1 cut(s)	443
PdmI	GAANNNNTTC	2 cut(s)	316, 724
PfeI	GAWTC	1 cut(s)	301
Pfl23II	CGTACG	1 cut(s)	77
PflFI	GACNNNGTC	1 cut(s)	690
PkrI	GCNGC	2 cut(s)	668, 850
PleI	GAGTC	7 cut(s)	172, 553, 561, 579, 585, 591, 603
PpsI	GAGTC	7 cut(s)	172, 553, 561, 579, 585, 591, 603
Ppu21I	YACGTR	1 cut(s)	910
PshAI	GACNNNNGTC	1 cut(s)	474
PspLI	CGTACG	1 cut(s)	77
PspN4I	GGNNCC	4 cut(s)	377, 395, 491, 665
PspPI	GGNCC	3 cut(s)	23, 284, 394
PsuI	RGATCY	1 cut(s)	900
PsyI	GACNNNGTC	1 cut(s)	690
RsaI	GTAC	5 cut(s)	79, 344, 377, 589, 840
RsaNI	GTAC	5 cut(s)	78, 343, 376, 588, 839
SalI	GTCGAC	1 cut(s)	477
SatI	GCNGC	2 cut(s)	667, 849
Sau3AI	GATC	6 cut(s)	91, 519, 867, 871, 877, 900
Sau96I	GGNCC	3 cut(s)	23, 284, 394
SchI	GAGTC	7 cut(s)	173, 553, 562, 580, 586, 592, 604
ScrFI	CCNGG	1 cut(s)	254
SduI	GDGCHC	1 cut(s)	647
SfcI	CTRYAG	2 cut(s)	388, 514
SgrDI	CGTCGACG	1 cut(s)	477
SinI	GGWCC	1 cut(s)	394
Sse9I	AATT	2 cut(s)	748, 772
SsiI	CCGC	3 cut(s)	101, 550, 667
SspMI	CTAG	2 cut(s)	630, 914
StyD4I	CCNGG	1 cut(s)	252
StyI	CCWWGG	1 cut(s)	454
TaaI	ACNGT	4 cut(s)	265, 398, 443, 476
TaiI	ACGT	2 cut(s)	691, 912
TaqI	TCGA	7 cut(s)	108, 187, 478, 718, 754, 769, 870
TasI	AATT	2 cut(s)	748, 772
TatI	WGTACW	1 cut(s)	838
TauI	GCSGC	1 cut(s)	669
TfiI	GAWTC	1 cut(s)	301
TscAI	CASTG	1 cut(s)	676
TseFI	GTSAC	1 cut(s)	443
TseI	GCWGC	1 cut(s)	848
Tsp45I	GTSAC	1 cut(s)	443
TspDTI	ATGAA	3 cut(s)	127, 293, 558
TspGWI	ACGGA	1 cut(s)	65
TspRI	CASTG	1 cut(s)	676
Tth111I	GACNNNGTC	1 cut(s)	690
VpaK11BI	GGWCC	1 cut(s)	394
XapI	RAATTY	1 cut(s)	772
XmiI	GTMKAC	1 cut(s)	478
XmnI	GAANNNNTTC	2 cut(s)	316, 724
XspI	CTAG	2 cut(s)	630, 914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.