Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001498

Physical Location & Seq

Genomic Coordinates Reverse (-)

14322098 .. 14325346

Gene Structure 3249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0169500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGAAACTAATGGTAGCATTTCTAATTCCCATGAAAGTCAACCTTCAGATGCTTCAGATAGTACTAATAAAGAGAAGCCTACTGAGAAAGTAGTCTTTATCAACCATGCTGAGATAGCTTGGCAGGAGAGAAGAAGAGAATGGGTTGGTGATCAGTCTCAAAAACCACGAAGAGCACCAAGAGAACCAATAATGAGCTGGACCACAACGTATGAGGATCTTCTTTTAACTACTGAACCTTTCCAGGAGCCCATACCTTTAGCTGAAATGGTGGATTTTTTAGTTGATATATGGCTCGAAGAAGGCCTATATGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

105

Amino Acids

12.22

Weight (kDa)

4.49

Isoelectric Point (pI)

57.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
clamp_Gag1-like	PF13259	1 - 61	5.7e-06	Gag1-like, clamp domain
clamp_Gag1-like	PF13259	66 - 105	9.4e-11	Gag1-like, clamp domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64200 AT5G64200
fragaria_vesca	FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_6g21680
malus_domestica	MD08G1182200.v1.1 MD14G1052000.v1.1 MD15G1367900.v1.1
prunus_persica	Prupe.1G516100_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1
pyrus_communis	pycom08g15600 pycom12g04670 pycom14g04330 pycom15g32980
rosa_chinensis	RchiOBHm_Chr3g0478961 RchiOBHm_Chr7g0239081
rosa_laevigata	RLG00000000784 RLG00000023616
rosa_multiflora	Rmu_sc0004605.1_g000002 Rmu_sc0005645.1_g000001 Rmu_sc0012163.1_g000002
rosa_roxburghii	Rroxscaffold_3G00221270 Rroxscaffold_6G00402870
rosa_rugosa	Rorug03G0169300 Rorug03G0169400 Rorug03G0169400 Rorug03G0169400 Rorug03G0169500 Rorug03G0169600 Rorug07G0325500 Rorug07G0325600 Rorug07G0325700 Rorug07G0325800
rosa_samantha	Rh3AG220800 Rh3BG252800 Rh3CG249500 Rh3DG245500 Rh7AG480000 Rh7CG497500 Rh7DG465100
rosa_wichuraiana	Rw3G019860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	225
AcuI	CTGAAG	2 cut(s)	30, 39
AfaI	GTAC	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	243
AluBI	AGCT	3 cut(s)	119, 198, 263
AluI	AGCT	3 cut(s)	119, 198, 263
Alw21I	GWGCWC	1 cut(s)	178
Alw26I	GTCTC	1 cut(s)	162
AlwI	GGATC	1 cut(s)	225
AoxI	GGCC	1 cut(s)	304
AspS9I	GGNCC	1 cut(s)	201
AsuHPI	GGTGA	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	201
BanII	GRGCYC	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	178
BciT130I	CCWGG	1 cut(s)	245
BclI	TGATCA	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	162
BfaI	CTAG	1 cut(s)	316
BmcAI	AGTACT	1 cut(s)	64
Bme1390I	CCNGG	1 cut(s)	245
Bme18I	GGWCC	1 cut(s)	201
BmgT120I	GGNCC	1 cut(s)	201
BmiI	GGNNCC	1 cut(s)	249
BmrFI	CCNGG	1 cut(s)	245
BmsI	GCATC	1 cut(s)	40
BseBI	CCWGG	1 cut(s)	245
BseMII	CTCAG	2 cut(s)	75, 102
BshFI	GGCC	1 cut(s)	306
BsiHKAI	GWGCWC	1 cut(s)	178
BsmAI	GTCTC	1 cut(s)	162
BsnI	GGCC	1 cut(s)	306
Bsp1286I	GDGCHC	2 cut(s)	178, 252
Bsp143I	GATC	2 cut(s)	151, 217
BspANI	GGCC	1 cut(s)	306
BspCNI	CTCAG	2 cut(s)	76, 103
BspLI	GGNNCC	1 cut(s)	249
BspPI	GGATC	1 cut(s)	225
BspQI	GCTCTTC	1 cut(s)	166
BssMI	GATC	2 cut(s)	151, 217
Bst2UI	CCWGG	1 cut(s)	245
Bst6I	CTCTTC	2 cut(s)	130, 166
BstDEI	CTNAG	2 cut(s)	84, 111
BstKTI	GATC	2 cut(s)	154, 220
BstMAI	GTCTC	1 cut(s)	162
BstMBI	GATC	2 cut(s)	151, 217
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstNI	CCWGG	1 cut(s)	245
BstSCI	CCNGG	1 cut(s)	243
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	306
Cfr13I	GGNCC	1 cut(s)	201
Csp6I	GTAC	1 cut(s)	63
CviAII	CATG	2 cut(s)	32, 107
CviJI	RGCY	7 cut(s)	79, 119, 198, 250, 263, 295, 306
CviKI_1	RGCY	7 cut(s)	79, 119, 198, 250, 263, 295, 306
CviQI	GTAC	1 cut(s)	63
DdeI	CTNAG	2 cut(s)	84, 111
DpnI	GATC	2 cut(s)	153, 219
DpnII	GATC	2 cut(s)	151, 217
Eam1104I	CTCTTC	2 cut(s)	130, 166
EarI	CTCTTC	2 cut(s)	130, 166
Eco147I	AGGCCT	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	201
Eco57I	CTGAAG	2 cut(s)	30, 39
EcoRII	CCWGG	1 cut(s)	243
EcoT38I	GRGCYC	1 cut(s)	252
FaeI	CATG	2 cut(s)	35, 110
FaiI	YATR	8 cut(s)	33, 108, 213, 254, 290, 292, 310, 312
FalI	AAGNNNNNCTT	2 cut(s)	28, 60
FatI	CATG	2 cut(s)	31, 106
FbaI	TGATCA	1 cut(s)	151
FriOI	GRGCYC	1 cut(s)	252
FspBI	CTAG	1 cut(s)	316
HaeIII	GGCC	1 cut(s)	306
Hin1II	CATG	2 cut(s)	35, 110
HincII	GTYRAC	1 cut(s)	41
HindII	GTYRAC	1 cut(s)	41
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188I	TCNGA	2 cut(s)	49, 58
Hpy8I	GTNNAC	1 cut(s)	41
HpyAV	CCTTC	2 cut(s)	54, 296
HpyCH4IV	ACGT	1 cut(s)	209
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	2 cut(s)	84, 111
HpySE526I	ACGT	1 cut(s)	209
Hsp92II	CATG	2 cut(s)	35, 110
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	2 cut(s)	151, 217
LguI	GCTCTTC	1 cut(s)	166
LmnI	GCTCC	1 cut(s)	247
LpnPI	CCDG	4 cut(s)	110, 184, 230, 257
LweI	GCATC	1 cut(s)	40
MaeI	CTAG	1 cut(s)	316
MaeII	ACGT	1 cut(s)	209
MalI	GATC	2 cut(s)	153, 219
MboI	GATC	2 cut(s)	151, 217
MboII	GAAGA	5 cut(s)	144, 147, 183, 212, 311
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	2 cut(s)	178, 252
MluCI	AATT	1 cut(s)	25
MnlI	CCTC	1 cut(s)	208
MseI	TTAA	1 cut(s)	227
MspR9I	CCNGG	1 cut(s)	245
MvaI	CCWGG	1 cut(s)	245
MwoI	GCNNNNNNNGC	1 cut(s)	116
NdeII	GATC	2 cut(s)	151, 217
NlaIII	CATG	2 cut(s)	35, 110
NlaIV	GGNNCC	1 cut(s)	249
PceI	AGGCCT	1 cut(s)	306
PciSI	GCTCTTC	1 cut(s)	166
PfoI	TCCNGGA	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	243
PspGI	CCWGG	1 cut(s)	243
PspN4I	GGNNCC	1 cut(s)	249
PspPI	GGNCC	1 cut(s)	201
PsuI	RGATCY	1 cut(s)	217
RsaI	GTAC	1 cut(s)	64
RsaNI	GTAC	1 cut(s)	63
SapI	GCTCTTC	1 cut(s)	166
SaqAI	TTAA	1 cut(s)	227
Sau3AI	GATC	2 cut(s)	151, 217
Sau96I	GGNCC	1 cut(s)	201
ScaI	AGTACT	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	2 cut(s)	178, 252
SetI	ASST	7 cut(s)	46, 121, 200, 212, 241, 259, 265
SfaNI	GCATC	1 cut(s)	40
SinI	GGWCC	1 cut(s)	201
Sse9I	AATT	1 cut(s)	25
SseBI	AGGCCT	1 cut(s)	306
SspMI	CTAG	1 cut(s)	316
StuI	AGGCCT	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	243
TaiI	ACGT	1 cut(s)	212
TaqI	TCGA	1 cut(s)	297
TasI	AATT	1 cut(s)	25
TatI	WGTACW	1 cut(s)	62
Tru1I	TTAA	1 cut(s)	227
Tru9I	TTAA	1 cut(s)	227
TspDTI	ATGAA	1 cut(s)	48
VpaK11BI	GGWCC	1 cut(s)	201
XcmI	CCANNNNNNNNNTGG	1 cut(s)	195
XspI	CTAG	1 cut(s)	316
ZrmI	AGTACT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.