Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001498

Physical Location & Seq

Genomic Coordinates Reverse (-)

42454988 .. 42458894

Gene Structure 3907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G516100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGTCGCACTTCGGACGATCTGGACCTCCAGATATCAGAGACACCTACTCTCTCCTCGTCCTCAACATCACGTTCCGAACCACCGCAGACGATCTCTTCCCGCTCTTCGACAAGTATGGCAAGGTAGTCGATGTCTTCATTCCCAGGGATCGAAGAACCGGTGATTCACGCGGCTTTGCTTTCGTTCGGTATAAGTATCAAGACGAGGCTTCAAAGGCCGTAGAGAAGCTCGACGGGAGAGTTGTCGATGGAAGAGAGATTATGGTTCAGTTTGCTAAATATGGCCCCAATGCTGAGCGAATCCACAAGGGTAGGGTGAGTGAATCATCTTCCAAGCTCAAATCAAGGTCCAGAAGCCGCAGCCCTCGTCCAAGATATCGAGATGAATATAAGGATAAGGATTACAAGAGAAGTCGCAGTCGAAGTAGGGAGAGACATGGTCGTGACAGGCATCATAGGAGTGAAAGAGAGCATCGCTACAGAAGCAGGAGCCGCAGTGCAAGTCCTGATAATCATAAATCCCGCGAGAGGGGTAGATATGATGATGAGCGGCGTAGTCGGAGCCGGTCATATGGAAGTGCCTCTCCTCCTCGGAATAGCCCTAAATCTCGGAGAAGCCCTTCTCCCCGGAGGAGTCTCTCTCCCAGGAGGAGTTTATCTCCCCGGAGGAGCCTATCACCTCGGAGGAGCCCATCTCCTCGGAAGAGCCCATCTTCTCGGAGGAGCCCTTCTCCTCGTAGGACACCTTCAAGGGGTGAGAATGCTGATGGACGCAACCGGAACGAGCGCTCTCCTACCCCAAAAGATGTTTCACCACATGGTCGACGTGATGATTCTCCAAGTCCTTCCCCTCGTAAATCTGATGCTGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

292

Amino Acids

33.9

Weight (kDa)

11.39

Isoelectric Point (pI)

109.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64200 AT5G64200
fragaria_vesca	FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_6g21680
malus_domestica	MD08G1182200.v1.1 MD14G1052000.v1.1 MD15G1367900.v1.1
prunus_persica	Prupe.1G516100_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1
pyrus_communis	pycom08g15600 pycom12g04670 pycom14g04330 pycom15g32980
rosa_chinensis	RchiOBHm_Chr3g0478961 RchiOBHm_Chr7g0239081
rosa_laevigata	RLG00000000784 RLG00000023616
rosa_multiflora	Rmu_sc0004605.1_g000002 Rmu_sc0005645.1_g000001 Rmu_sc0012163.1_g000002
rosa_roxburghii	Rroxscaffold_3G00221270 Rroxscaffold_6G00402870
rosa_rugosa	Rorug03G0169300 Rorug03G0169400 Rorug03G0169400 Rorug03G0169400 Rorug03G0169500 Rorug03G0169600 Rorug07G0325500 Rorug07G0325600 Rorug07G0325700 Rorug07G0325800
rosa_samantha	Rh3AG220800 Rh3BG252800 Rh3CG249500 Rh3DG245500 Rh7AG480000 Rh7CG497500 Rh7DG465100
rosa_wichuraiana	Rw3G019860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	103, 550
AccI	GTMKAC	1 cut(s)	823
AccII	CGCG	2 cut(s)	171, 525
AciI	CCGC	7 cut(s)	84, 101, 171, 358, 493, 523, 550
AclWI	GGATC	1 cut(s)	156
AfeI	AGCGCT	1 cut(s)	788
AfiI	CCNNNNNNNGG	3 cut(s)	528, 529, 752
AgeI	ACCGGT	1 cut(s)	158
AgsI	TTSAA	2 cut(s)	213, 750
AjiI	CACGTC	1 cut(s)	827
AjnI	CCWGG	2 cut(s)	143, 644
AjuI	GAANNNNNNNTTGG	2 cut(s)	793, 825
AluBI	AGCT	2 cut(s)	229, 337
AluI	AGCT	2 cut(s)	229, 337
Alw26I	GTCTC	3 cut(s)	33, 427, 641
AlwI	GGATC	1 cut(s)	156
Aor51HI	AGCGCT	1 cut(s)	788
AoxI	GGCC	2 cut(s)	216, 283
ApeKI	GCWGC	1 cut(s)	360
AsiGI	ACCGGT	1 cut(s)	158
Asp700I	GAANNNNTTC	1 cut(s)	619
AspLEI	GCGC	1 cut(s)	789
AspS9I	GGNCC	3 cut(s)	23, 284, 348
AsuC2I	CCSGG	2 cut(s)	628, 664
AsuHPI	GGTGA	5 cut(s)	173, 328, 669, 767, 804
AvaII	GGWCC	2 cut(s)	23, 348
BanII	GRGCYC	3 cut(s)	692, 710, 728
BarI	GAAGNNNNNNTAC	2 cut(s)	730, 762
BbsI	GAAGAC	1 cut(s)	127
BbvI	GCAGC	1 cut(s)	372
BccI	CCATC	4 cut(s)	242, 700, 718, 761
BceAI	ACGGC	1 cut(s)	203
BcgI	CGANNNNNNTGC	2 cut(s)	109, 143
BciT130I	CCWGG	2 cut(s)	145, 646
BcnI	CCSGG	2 cut(s)	628, 664
BcoDI	GTCTC	3 cut(s)	33, 427, 641
BfmI	CTRYAG	1 cut(s)	478
BfoI	RGCGCY	1 cut(s)	790
BisI	GCNGC	5 cut(s)	172, 358, 361, 493, 551
BlpI	GCTNAGC	1 cut(s)	294
BlsI	GCNGC	5 cut(s)	173, 359, 362, 494, 552
Bme1390I	CCNGG	4 cut(s)	145, 628, 646, 664
Bme18I	GGWCC	2 cut(s)	23, 348
BmgBI	CACGTC	1 cut(s)	827
BmgT120I	GGNCC	3 cut(s)	23, 284, 348
BmiI	GGNNCC	6 cut(s)	286, 491, 563, 671, 689, 725
BmrFI	CCNGG	4 cut(s)	145, 628, 646, 664
BmsI	GCATC	3 cut(s)	460, 481, 853
BpiI	GAAGAC	1 cut(s)	127
BplI	GAGNNNNNCTC	8 cut(s)	625, 657, 643, 675, 679, 711, 715, 747
BpmI	CTGGAG	1 cut(s)	12
Bpu1102I	GCTNAGC	1 cut(s)	294
BpuMI	CCSGG	2 cut(s)	628, 664
BsaJI	CCNNGG	8 cut(s)	143, 144, 590, 626, 644, 662, 680, 698
BsaWI	WCCGGW	2 cut(s)	158, 777
BsaXI	ACNNNNNCTCC	2 cut(s)	481, 511
Bsc4I	CCNNNNNNNGG	3 cut(s)	528, 529, 752
Bse118I	RCCGGY	2 cut(s)	158, 564
BseBI	CCWGG	2 cut(s)	145, 646
BseDI	CCNNGG	8 cut(s)	143, 144, 590, 626, 644, 662, 680, 698
BseLI	CCNNNNNNNGG	3 cut(s)	528, 529, 752
BseMII	CTCAG	1 cut(s)	285
BseXI	GCAGC	1 cut(s)	372
Bsh1236I	CGCG	2 cut(s)	171, 525
BshFI	GGCC	2 cut(s)	218, 285
BshTI	ACCGGT	1 cut(s)	158
BsiSI	CCGG	5 cut(s)	159, 565, 628, 664, 778
BslI	CCNNNNNNNGG	3 cut(s)	528, 529, 752
BsmAI	GTCTC	3 cut(s)	33, 427, 641
BsmI	GAATGC	1 cut(s)	766
BsnI	GGCC	2 cut(s)	218, 285
Bsp1286I	GDGCHC	3 cut(s)	692, 710, 728
Bsp143I	GATC	3 cut(s)	17, 91, 148
Bsp1720I	GCTNAGC	1 cut(s)	294
BspACI	CCGC	7 cut(s)	84, 101, 171, 358, 493, 523, 550
BspANI	GGCC	2 cut(s)	218, 285
BspCNI	CTCAG	1 cut(s)	286
BspFNI	CGCG	2 cut(s)	171, 525
BspLI	GGNNCC	6 cut(s)	286, 491, 563, 671, 689, 725
BspPI	GGATC	1 cut(s)	156
BspQI	GCTCTTC	2 cut(s)	110, 698
BsrBI	CCGCTC	2 cut(s)	103, 550
BsrFI	RCCGGY	2 cut(s)	158, 564
BssAI	RCCGGY	2 cut(s)	158, 564
BssECI	CCNNGG	8 cut(s)	143, 144, 590, 626, 644, 662, 680, 698
BssMI	GATC	3 cut(s)	17, 91, 148
Bst2UI	CCWGG	2 cut(s)	145, 646
Bst6I	CTCTTC	4 cut(s)	101, 110, 247, 698
BstDEI	CTNAG	1 cut(s)	294
BstFNI	CGCG	2 cut(s)	171, 525
BstH2I	RGCGCY	1 cut(s)	790
BstHHI	GCGC	1 cut(s)	789
BstKTI	GATC	3 cut(s)	20, 94, 151
BstMAI	GTCTC	3 cut(s)	33, 427, 641
BstMBI	GATC	3 cut(s)	17, 91, 148
BstMWI	GCNNNNNNNGC	3 cut(s)	215, 483, 492
BstNI	CCWGG	2 cut(s)	145, 646
BstSCI	CCNGG	4 cut(s)	143, 626, 644, 662
BstSFI	CTRYAG	1 cut(s)	478
BstUI	CGCG	2 cut(s)	171, 525
BstV1I	GCAGC	1 cut(s)	372
BstV2I	GAAGAC	1 cut(s)	127
BsuRI	GGCC	2 cut(s)	218, 285
BtgZI	GCGATG	1 cut(s)	458
BtrI	CACGTC	1 cut(s)	827
BtsI	GCAGTG	1 cut(s)	502
BtsIMutI	CAGTG	1 cut(s)	502
CfoI	GCGC	1 cut(s)	789
Cfr10I	RCCGGY	2 cut(s)	158, 564
Cfr13I	GGNCC	3 cut(s)	23, 284, 348
CseI	GACGC	1 cut(s)	780
CspAI	ACCGGT	1 cut(s)	158
CviAII	CATG	2 cut(s)	437, 818
DdeI	CTNAG	1 cut(s)	294
DpnI	GATC	3 cut(s)	19, 93, 150
DpnII	GATC	3 cut(s)	17, 91, 148
Eam1104I	CTCTTC	4 cut(s)	101, 110, 247, 698
EarI	CTCTTC	4 cut(s)	101, 110, 247, 698
Eco24I	GRGCYC	3 cut(s)	692, 710, 728
Eco32I	GATATC	2 cut(s)	34, 377
Eco47I	GGWCC	2 cut(s)	23, 348
Eco47III	AGCGCT	1 cut(s)	788
EcoRII	CCWGG	2 cut(s)	143, 644
EcoRV	GATATC	2 cut(s)	34, 377
EcoT38I	GRGCYC	3 cut(s)	692, 710, 728
FaeI	CATG	2 cut(s)	440, 821
FatI	CATG	2 cut(s)	436, 817
FauI	CCCGC	2 cut(s)	108, 530
FauNDI	CATATG	1 cut(s)	571
FblI	GTMKAC	1 cut(s)	823
Fnu4HI	GCNGC	5 cut(s)	172, 358, 361, 493, 551
FriOI	GRGCYC	3 cut(s)	692, 710, 728
Fsp4HI	GCNGC	5 cut(s)	172, 358, 361, 493, 551
GlaI	GCGC	1 cut(s)	788
GluI	GCNGC	5 cut(s)	172, 358, 361, 493, 551
GsuI	CTGGAG	1 cut(s)	12
HaeII	RGCGCY	1 cut(s)	790
HaeIII	GGCC	2 cut(s)	218, 285
HapII	CCGG	5 cut(s)	159, 565, 628, 664, 778
HgaI	GACGC	1 cut(s)	780
HhaI	GCGC	1 cut(s)	789
Hin1II	CATG	2 cut(s)	440, 821
Hin6I	GCGC	1 cut(s)	787
HinP1I	GCGC	1 cut(s)	787
HincII	GTYRAC	1 cut(s)	824
HindII	GTYRAC	1 cut(s)	824
HinfI	GANTC	5 cut(s)	164, 300, 323, 634, 833
HpaII	CCGG	5 cut(s)	159, 565, 628, 664, 778
HphI	GGTGA	5 cut(s)	173, 328, 669, 767, 804
Hpy166II	GTNNAC	1 cut(s)	824
Hpy188III	TCNNGA	7 cut(s)	21, 29, 200, 351, 380, 443, 506
Hpy8I	GTNNAC	1 cut(s)	824
Hpy99I	CGWCG	2 cut(s)	236, 828
HpyAV	CCTTC	4 cut(s)	630, 738, 756, 855
HpyCH4IV	ACGT	2 cut(s)	71, 826
HpyCH4V	TGCA	1 cut(s)	500
HpyF10VI	GCNNNNNNNGC	3 cut(s)	215, 483, 492
HpyF3I	CTNAG	1 cut(s)	294
HpySE526I	ACGT	2 cut(s)	71, 826
Hsp92II	CATG	2 cut(s)	440, 821
HspAI	GCGC	1 cut(s)	787
Kzo9I	GATC	3 cut(s)	17, 91, 148
LguI	GCTCTTC	2 cut(s)	110, 698
LmnI	GCTCC	5 cut(s)	489, 561, 669, 687, 723
Lsp1109I	GCAGC	1 cut(s)	372
LweI	GCATC	3 cut(s)	460, 481, 853
MaeII	ACGT	2 cut(s)	71, 826
MaeIII	GTNAC	1 cut(s)	443
MalI	GATC	3 cut(s)	19, 93, 150
MbiI	CCGCTC	2 cut(s)	103, 550
MboI	GATC	3 cut(s)	17, 91, 148
MboII	GAAGA	8 cut(s)	88, 97, 127, 165, 264, 321, 705, 715
MhlI	GDGCHC	3 cut(s)	692, 710, 728
MlyI	GAGTC	1 cut(s)	643
MmeI	TCCRAC	1 cut(s)	539
MroXI	GAANNNNTTC	1 cut(s)	619
MslI	CAYNNNNRTG	2 cut(s)	441, 459
MspI	CCGG	5 cut(s)	159, 565, 628, 664, 778
MspR9I	CCNGG	4 cut(s)	145, 628, 646, 664
Mva1269I	GAATGC	1 cut(s)	766
MvaI	CCWGG	2 cut(s)	145, 646
MvnI	CGCG	2 cut(s)	171, 525
MwoI	GCNNNNNNNGC	3 cut(s)	215, 483, 492
NciI	CCSGG	2 cut(s)	628, 664
NdeI	CATATG	1 cut(s)	571
NdeII	GATC	3 cut(s)	17, 91, 148
NlaIII	CATG	2 cut(s)	440, 821
NlaIV	GGNNCC	6 cut(s)	286, 491, 563, 671, 689, 725
NmuCI	GTSAC	1 cut(s)	443
PasI	CCCWGGG	1 cut(s)	144
PciSI	GCTCTTC	2 cut(s)	110, 698
PctI	GAATGC	1 cut(s)	766
PdmI	GAANNNNTTC	1 cut(s)	619
PfeI	GAWTC	4 cut(s)	164, 300, 323, 833
PflFI	GACNNNGTC	1 cut(s)	438
PinAI	ACCGGT	1 cut(s)	158
PkrI	GCNGC	5 cut(s)	173, 359, 362, 494, 552
PleI	GAGTC	1 cut(s)	642
PpsI	GAGTC	1 cut(s)	642
Psp6I	CCWGG	2 cut(s)	143, 644
PspGI	CCWGG	2 cut(s)	143, 644
PspN4I	GGNNCC	6 cut(s)	286, 491, 563, 671, 689, 725
PspPI	GGNCC	3 cut(s)	23, 284, 348
PsyI	GACNNNGTC	1 cut(s)	438
RseI	CAYNNNNRTG	2 cut(s)	441, 459
SalI	GTCGAC	1 cut(s)	822
SapI	GCTCTTC	2 cut(s)	110, 698
SatI	GCNGC	5 cut(s)	172, 358, 361, 493, 551
Sau3AI	GATC	3 cut(s)	17, 91, 148
Sau96I	GGNCC	3 cut(s)	23, 284, 348
SchI	GAGTC	1 cut(s)	643
ScrFI	CCNGG	4 cut(s)	145, 628, 646, 664
SduI	GDGCHC	3 cut(s)	692, 710, 728
SfaNI	GCATC	3 cut(s)	460, 481, 853
SfcI	CTRYAG	1 cut(s)	478
SinI	GGWCC	2 cut(s)	23, 348
SmiMI	CAYNNNNRTG	2 cut(s)	441, 459
SsiI	CCGC	7 cut(s)	84, 101, 171, 358, 493, 523, 550
StyD4I	CCNGG	4 cut(s)	143, 626, 644, 662
TaiI	ACGT	2 cut(s)	74, 829
TaqI	TCGA	8 cut(s)	108, 129, 151, 231, 246, 379, 421, 823
TauI	GCSGC	4 cut(s)	174, 360, 495, 553
TfiI	GAWTC	4 cut(s)	164, 300, 323, 833
TscAI	CASTG	1 cut(s)	502
TseFI	GTSAC	1 cut(s)	443
TseI	GCWGC	1 cut(s)	360
Tsp45I	GTSAC	1 cut(s)	443
TspDTI	ATGAA	2 cut(s)	127, 399
TspRI	CASTG	1 cut(s)	502
Tth111I	GACNNNGTC	1 cut(s)	438
VpaK11BI	GGWCC	2 cut(s)	23, 348
XmiI	GTMKAC	1 cut(s)	823
XmnI	GAANNNNTTC	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.