Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0001498

Physical Location & Seq

Genomic Coordinates Reverse (-)

22593392 .. 22597167

Gene Structure 3776 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1182200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGTCGCACTTCGGTCGATCCGGACCTCCGGACATCAGAGAGACCTACTCCCTCCTCGTCCTCAACATCACTTTCCGAACCACCGCGGACGACCTTTTCCCGCTCTTCGACAAGTACGGAAAGGTCGTCGATGTCTTCATTCCCCGAGACCGGAGAACTGGCGATTCCCGCGGATTCGCTTTCGTTCGGTATAAGTATCAGGACGAGGCGCAGAAGGCTGTGGAGAAACTTGATGGGAGAGTTGTCGATGGAAGAGAGATAATGGTTCAGTTTGCTAAATACGGCCCCAATGCGGAGCGAATCCACAAGGGTAGGGTAAGTGAATCAACTTCTAAGCTCAAATCAAGGTCCCGAAGCCGTAGCCGTAGCCCTCGTCCTAGGTATCGAGATGAATATAAGGAAAAGGATTACGGAAGTCGCAGTCGAAGTAGGGAGAAATATAGTCGTGACAGGCACCATAGGAGTGAAAGAGAGCATCGCTACAGAAGTAGGAGCCGCAGTGCAAGTCCTGATAATCGTAAGAGGGGCAGATATGATGATGAGCGGCGGAGTCGAAGCCGGTCTTATGGAAGTGCCTCTCCTGTTCGGAATAGCCCCAAGTCTCGCAGGAGCCCCTCTCCTCGTAGGAGCTCATCTCCTCGCAGGAGCCCTTCTCCTCGCATGAGCGCATCTCCTCGGAGGAGCACATCTCCTCAGAGGAGCCCATCTCCTCGTACGACACCTTCTAGGGGTGAGAATGTTGATGGACGCAACCGCAAGGAACGCTCTCCTACCCCCAAAGATATTTCACCACATGGACGACGTAATGATTCTCCAAGTCTTTCCCCTCGTAAATCTGATGCTGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

284

Amino Acids

32.92

Weight (kDa)

11.25

Isoelectric Point (pI)

101.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	18 - 87	2.8e-20	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64200 AT5G64200
fragaria_vesca	FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_6g21680
malus_domestica	MD08G1182200.v1.1 MD14G1052000.v1.1 MD15G1367900.v1.1
prunus_persica	Prupe.1G516100_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1
pyrus_communis	pycom08g15600 pycom12g04670 pycom14g04330 pycom15g32980
rosa_chinensis	RchiOBHm_Chr3g0478961 RchiOBHm_Chr7g0239081
rosa_laevigata	RLG00000000784 RLG00000023616
rosa_multiflora	Rmu_sc0004605.1_g000002 Rmu_sc0005645.1_g000001 Rmu_sc0012163.1_g000002
rosa_roxburghii	Rroxscaffold_3G00221270 Rroxscaffold_6G00402870
rosa_rugosa	Rorug03G0169300 Rorug03G0169400 Rorug03G0169400 Rorug03G0169400 Rorug03G0169500 Rorug03G0169600 Rorug07G0325500 Rorug07G0325600 Rorug07G0325700 Rorug07G0325800
rosa_samantha	Rh3AG220800 Rh3BG252800 Rh3CG249500 Rh3DG245500 Rh7AG480000 Rh7CG497500 Rh7DG465100
rosa_wichuraiana	Rw3G019860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	453
AccBSI	CCGCTC	2 cut(s)	103, 544
AccII	CGCG	2 cut(s)	86, 171
AccIII	TCCGGA	2 cut(s)	20, 28
AclWI	GGATC	1 cut(s)	12
AfaI	GTAC	2 cut(s)	116, 715
AfiI	CCNNNNNNNGG	3 cut(s)	150, 292, 728
AluBI	AGCT	2 cut(s)	337, 630
AluI	AGCT	2 cut(s)	337, 630
Alw21I	GWGCWC	2 cut(s)	632, 686
Alw26I	GTCTC	3 cut(s)	35, 141, 606
AlwI	GGATC	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	144
Aor13HI	TCCGGA	2 cut(s)	20, 28
AoxI	GGCC	1 cut(s)	283
AspA2I	CCTAGG	1 cut(s)	377
AspLEI	GCGC	2 cut(s)	211, 668
AspS9I	GGNCC	3 cut(s)	23, 284, 348
AsuHPI	GGTGA	2 cut(s)	743, 780
AvaI	CYCGRG	1 cut(s)	144
AvaII	GGWCC	2 cut(s)	23, 348
AvrII	CCTAGG	1 cut(s)	377
BanI	GGYRCC	1 cut(s)	453
BanII	GRGCYC	4 cut(s)	614, 632, 650, 704
BarI	GAAGNNNNNNTAC	2 cut(s)	706, 738
BbsI	GAAGAC	1 cut(s)	127
Bbv12I	GWGCWC	2 cut(s)	632, 686
BccI	CCATC	4 cut(s)	227, 242, 712, 737
BceAI	ACGGC	3 cut(s)	298, 342, 348
BcgI	CGANNNNNNTGC	1 cut(s)	30
BcoDI	GTCTC	3 cut(s)	35, 141, 606
BfaI	CTAG	2 cut(s)	378, 726
BfmI	CTRYAG	1 cut(s)	481
BisI	GCNGC	2 cut(s)	496, 545
BlnI	CCTAGG	1 cut(s)	377
BlsI	GCNGC	2 cut(s)	497, 546
Bme18I	GGWCC	2 cut(s)	23, 348
BmeT110I	CYCGRG	1 cut(s)	144
BmgT120I	GGNCC	3 cut(s)	23, 284, 348
BmiI	GGNNCC	7 cut(s)	286, 350, 455, 494, 611, 647, 701
BmsI	GCATC	3 cut(s)	484, 677, 829
BpiI	GAAGAC	1 cut(s)	127
BsaI	GGTCTC	2 cut(s)	35, 141
BsaJI	CCNNGG	4 cut(s)	84, 169, 377, 674
BsaWI	WCCGGW	3 cut(s)	20, 28, 150
BsaXI	ACNNNNNCTCC	2 cut(s)	484, 514
Bsc4I	CCNNNNNNNGG	3 cut(s)	150, 292, 728
Bse118I	RCCGGY	1 cut(s)	558
Bse1I	ACTGG	1 cut(s)	163
BseAI	TCCGGA	2 cut(s)	20, 28
BseDI	CCNNGG	4 cut(s)	84, 169, 377, 674
BseLI	CCNNNNNNNGG	3 cut(s)	150, 292, 728
BseMII	CTCAG	1 cut(s)	707
BseNI	ACTGG	1 cut(s)	163
BseRI	GAGGAG	9 cut(s)	44, 609, 627, 645, 663, 681, 694, 699, 712
Bsh1236I	CGCG	2 cut(s)	86, 171
Bsh1285I	CGRYCG	1 cut(s)	16
BshFI	GGCC	1 cut(s)	285
BshNI	GGYRCC	1 cut(s)	453
BsiEI	CGRYCG	1 cut(s)	16
BsiHKAI	GWGCWC	2 cut(s)	632, 686
BsiHKCI	CYCGRG	1 cut(s)	144
BsiSI	CCGG	4 cut(s)	21, 29, 151, 559
BsiWI	CGTACG	1 cut(s)	713
BslFI	GGGAC	1 cut(s)	334
BslI	CCNNNNNNNGG	3 cut(s)	150, 292, 728
BsmAI	GTCTC	3 cut(s)	35, 141, 606
BsmFI	GGGAC	1 cut(s)	334
BsnI	GGCC	1 cut(s)	285
Bso31I	GGTCTC	2 cut(s)	35, 141
BsoBI	CYCGRG	1 cut(s)	144
Bsp1286I	GDGCHC	5 cut(s)	614, 632, 650, 686, 704
Bsp13I	TCCGGA	2 cut(s)	20, 28
Bsp143I	GATC	1 cut(s)	17
BspANI	GGCC	1 cut(s)	285
BspCNI	CTCAG	1 cut(s)	706
BspEI	TCCGGA	2 cut(s)	20, 28
BspFNI	CGCG	2 cut(s)	86, 171
BspLI	GGNNCC	7 cut(s)	286, 350, 455, 494, 611, 647, 701
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	110
BspT107I	GGYRCC	1 cut(s)	453
BspTNI	GGTCTC	2 cut(s)	35, 141
BsrBI	CCGCTC	2 cut(s)	103, 544
BsrFI	RCCGGY	1 cut(s)	558
BsrI	ACTGG	1 cut(s)	163
BssAI	RCCGGY	1 cut(s)	558
BssECI	CCNNGG	4 cut(s)	84, 169, 377, 674
BssMI	GATC	1 cut(s)	17
BssT1I	CCWWGG	1 cut(s)	377
Bst6I	CTCTTC	2 cut(s)	110, 247
BstDEI	CTNAG	2 cut(s)	333, 693
BstDSI	CCRYGG	2 cut(s)	84, 169
BstFNI	CGCG	2 cut(s)	86, 171
BstHHI	GCGC	2 cut(s)	211, 668
BstKTI	GATC	1 cut(s)	20
BstMAI	GTCTC	3 cut(s)	35, 141, 606
BstMBI	GATC	1 cut(s)	17
BstMCI	CGRYCG	1 cut(s)	16
BstMWI	GCNNNNNNNGC	3 cut(s)	168, 215, 762
BstSFI	CTRYAG	1 cut(s)	481
BstUI	CGCG	2 cut(s)	86, 171
BstV2I	GAAGAC	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	285
BtgI	CCRYGG	2 cut(s)	84, 169
BtgZI	GCGATG	1 cut(s)	461
BtsI	GCAGTG	1 cut(s)	505
BtsIMutI	CAGTG	1 cut(s)	505
CfoI	GCGC	2 cut(s)	211, 668
Cfr10I	RCCGGY	1 cut(s)	558
Cfr13I	GGNCC	3 cut(s)	23, 284, 348
Cfr42I	CCGCGG	2 cut(s)	87, 172
CseI	GACGC	1 cut(s)	756
Csp6I	GTAC	2 cut(s)	115, 714
CviAII	CATG	2 cut(s)	661, 794
CviQI	GTAC	2 cut(s)	115, 714
DdeI	CTNAG	2 cut(s)	333, 693
DpnI	GATC	1 cut(s)	19
DpnII	GATC	1 cut(s)	17
Eam1104I	CTCTTC	2 cut(s)	110, 247
EarI	CTCTTC	2 cut(s)	110, 247
EciI	GGCGGA	1 cut(s)	562
Ecl136II	GAGCTC	1 cut(s)	630
Eco130I	CCWWGG	1 cut(s)	377
Eco24I	GRGCYC	4 cut(s)	614, 632, 650, 704
Eco31I	GGTCTC	2 cut(s)	35, 141
Eco47I	GGWCC	2 cut(s)	23, 348
Eco53kI	GAGCTC	1 cut(s)	630
Eco88I	CYCGRG	1 cut(s)	144
EcoICRI	GAGCTC	1 cut(s)	630
EcoO109I	RGGNCCY	1 cut(s)	348
EcoT14I	CCWWGG	1 cut(s)	377
EcoT38I	GRGCYC	4 cut(s)	614, 632, 650, 704
ErhI	CCWWGG	1 cut(s)	377
FaeI	CATG	2 cut(s)	664, 797
FaiI	YATR	8 cut(s)	192, 396, 441, 459, 534, 567, 662, 795
FalI	AAGNNNNNCTT	2 cut(s)	547, 579
FaqI	GGGAC	1 cut(s)	334
FatI	CATG	2 cut(s)	660, 793
FauI	CCCGC	2 cut(s)	108, 176
Fnu4HI	GCNGC	2 cut(s)	496, 545
FriOI	GRGCYC	4 cut(s)	614, 632, 650, 704
Fsp4HI	GCNGC	2 cut(s)	496, 545
FspBI	CTAG	2 cut(s)	378, 726
GlaI	GCGC	2 cut(s)	210, 667
GluI	GCNGC	2 cut(s)	496, 545
HaeIII	GGCC	1 cut(s)	285
HapII	CCGG	4 cut(s)	21, 29, 151, 559
HgaI	GACGC	1 cut(s)	756
HhaI	GCGC	2 cut(s)	211, 668
Hin1II	CATG	2 cut(s)	664, 797
Hin6I	GCGC	2 cut(s)	209, 666
HinP1I	GCGC	2 cut(s)	209, 666
HinfI	GANTC	6 cut(s)	164, 174, 300, 323, 550, 809
HpaII	CCGG	4 cut(s)	21, 29, 151, 559
HphI	GGTGA	2 cut(s)	743, 780
Hpy188I	TCNGA	6 cut(s)	38, 77, 588, 678, 696, 838
Hpy188III	TCNNGA	7 cut(s)	21, 29, 200, 351, 386, 446, 509
Hpy99I	CGWCG	2 cut(s)	131, 804
HpyAV	CCTTC	3 cut(s)	208, 660, 732
HpyCH4IV	ACGT	1 cut(s)	802
HpyCH4V	TGCA	1 cut(s)	503
HpyF10VI	GCNNNNNNNGC	3 cut(s)	168, 215, 762
HpyF3I	CTNAG	2 cut(s)	333, 693
HpySE526I	ACGT	1 cut(s)	802
Hsp92II	CATG	2 cut(s)	664, 797
HspAI	GCGC	2 cut(s)	209, 666
Kpn2I	TCCGGA	2 cut(s)	20, 28
KspI	CCGCGG	2 cut(s)	87, 172
Kzo9I	GATC	1 cut(s)	17
LguI	GCTCTTC	1 cut(s)	110
LmnI	GCTCC	7 cut(s)	295, 492, 609, 627, 645, 681, 699
LweI	GCATC	3 cut(s)	484, 677, 829
MaeI	CTAG	2 cut(s)	378, 726
MaeII	ACGT	1 cut(s)	802
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	1 cut(s)	19
MbiI	CCGCTC	2 cut(s)	103, 544
MboI	GATC	1 cut(s)	17
MboII	GAAGA	3 cut(s)	97, 127, 264
MhlI	GDGCHC	5 cut(s)	614, 632, 650, 686, 704
MlyI	GAGTC	1 cut(s)	559
MroI	TCCGGA	2 cut(s)	20, 28
MslI	CAYNNNNRTG	1 cut(s)	462
MspA1I	CMGCKG	2 cut(s)	86, 171
MspI	CCGG	4 cut(s)	21, 29, 151, 559
MvnI	CGCG	2 cut(s)	86, 171
MwoI	GCNNNNNNNGC	3 cut(s)	168, 215, 762
NdeII	GATC	1 cut(s)	17
NlaIII	CATG	2 cut(s)	664, 797
NlaIV	GGNNCC	7 cut(s)	286, 350, 455, 494, 611, 647, 701
NmuCI	GTSAC	1 cut(s)	446
PciSI	GCTCTTC	1 cut(s)	110
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PfeI	GAWTC	5 cut(s)	164, 174, 300, 323, 809
Pfl23II	CGTACG	1 cut(s)	713
PkrI	GCNGC	2 cut(s)	497, 546
PleI	GAGTC	1 cut(s)	558
PpsI	GAGTC	1 cut(s)	558
PpuMI	RGGWCCY	1 cut(s)	348
Psp124BI	GAGCTC	1 cut(s)	632
Psp5II	RGGWCCY	1 cut(s)	348
PspLI	CGTACG	1 cut(s)	713
PspN4I	GGNNCC	7 cut(s)	286, 350, 455, 494, 611, 647, 701
PspPI	GGNCC	3 cut(s)	23, 284, 348
PspPPI	RGGWCCY	1 cut(s)	348
RsaI	GTAC	2 cut(s)	116, 715
RsaNI	GTAC	2 cut(s)	115, 714
RseI	CAYNNNNRTG	1 cut(s)	462
SacI	GAGCTC	1 cut(s)	632
SacII	CCGCGG	2 cut(s)	87, 172
SapI	GCTCTTC	1 cut(s)	110
SatI	GCNGC	2 cut(s)	496, 545
Sau3AI	GATC	1 cut(s)	17
Sau96I	GGNCC	3 cut(s)	23, 284, 348
SchI	GAGTC	1 cut(s)	559
SduI	GDGCHC	5 cut(s)	614, 632, 650, 686, 704
SfaNI	GCATC	3 cut(s)	484, 677, 829
SfcI	CTRYAG	1 cut(s)	481
Sfr303I	CCGCGG	2 cut(s)	87, 172
SgrBI	CCGCGG	2 cut(s)	87, 172
SinI	GGWCC	2 cut(s)	23, 348
SmiMI	CAYNNNNRTG	1 cut(s)	462
SspMI	CTAG	2 cut(s)	378, 726
SstI	GAGCTC	1 cut(s)	632
StyI	CCWWGG	1 cut(s)	377
TaiI	ACGT	1 cut(s)	805
TaqI	TCGA	7 cut(s)	16, 108, 129, 246, 385, 424, 553
TauI	GCSGC	2 cut(s)	498, 547
TfiI	GAWTC	5 cut(s)	164, 174, 300, 323, 809
TscAI	CASTG	1 cut(s)	505
TseFI	GTSAC	1 cut(s)	446
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	2 cut(s)	127, 405
TspGWI	ACGGA	2 cut(s)	132, 426
TspRI	CASTG	1 cut(s)	505
VpaK11BI	GGWCC	2 cut(s)	23, 348
XmaJI	CCTAGG	1 cut(s)	377
XspI	CTAG	2 cut(s)	378, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.