Rmu_sc0005645.1_g000001

splicing factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005645.1
Physical Location & Seq
Forward (+)
1 .. 10722
10722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005645.1_g000001.1.cds

Sequence Viewer

Length: 1138 bp
ccttcaaagcctagcaaccaccaaccccgaacttgaagctctcgatcccaggagcccagaactacctacggcgtcacatgaactggctggaaaagcaccgaaccggccacaagaagacatagaggattcactgcccggttcgagtatttccagcccaccatcgaccttaatattctgtcaacgtcggcatcttcactccacaatccggatgagtaacctaaacaaactggacttcgatccattgagaccaactgactttggatatcacaagcgagttcgtgatgtttgccaatattccaaggccgatggaatcttggatacgattctcgagcctagccaggacgtgctaactgttgagcagactcaagctttggaagcaaatagagtagctttggaggcaaataaggcgaaagaccagggtcgcgcgcttgtttcgccgccgaggtcgcgccctagctttgtcggagatgttgatttagagaggattttgattttcagacggactggcgagtccaggggatttgcttttgtgcgatacaaatatgcagatgaggcacagaaagcagttgagaggctcgatggaagagttgttgatggtcgcgaaataactgttcagtttgcaaaatatggacctaatgcagagaagattcataaaggaaggattactgaaactctaccaaaatcgatgcacaggtcaagaagtcgcagtcctcggagaaggtaccgtgatgactatagagatcgggactacaggaggagaagtcgcagtaggagttgggataggtatgagcgtgacagataccgccatggtagggacagataccgccatagacgaagcaggagccctagtgccagtcctgattactacaggagcaggggaagaggacgctgtgatgatgatgatgattatgataggcggaggcggagtccgattcgaagccgttcttttgatagtgcatcccctgctcggcgtagccttacacctcaaaggagcctttctccgttaagcagaagccacagtgtcagcccttatggacatggtcgtgatggacgatcgcctaattctcgaagtgtttcaccacgaggtcgtcctgctgattctcgaagtccatcacctcgccattcagatgatgattga

Protein Analysis

378

Amino Acids

43.61

Weight (kDa)

10.35

Isoelectric Point (pI)

93.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 509
Acc65I GGTACC 1 cut(s) 721
AccB1I GGYRCC 1 cut(s) 721
AccII CGCG 4 cut(s) 424, 426, 449, 601
AccIII TCCGGA 1 cut(s) 205
AciI CCGC 5 cut(s) 438, 803, 824, 917, 923
AclWI GGATC 2 cut(s) 39, 231
AcoI YGGCCR 1 cut(s) 105
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 1 cut(s) 723
AfiI CCNNNNNNNGG 3 cut(s) 205, 812, 967
AgsI TTSAA 2 cut(s) 6, 36
AjiI CACGTC 1 cut(s) 344
AjnI CCWGG 4 cut(s) 48, 337, 415, 513
AluBI AGCT 4 cut(s) 39, 369, 390, 457
AluI AGCT 4 cut(s) 39, 369, 390, 457
Alw26I GTCTC 1 cut(s) 239
AlwI GGATC 2 cut(s) 39, 231
Ama87I CYCGRG 1 cut(s) 327
Aor13HI TCCGGA 1 cut(s) 205
AoxI GGCC 2 cut(s) 105, 301
ArsI GACNNNNNNTTYG 2 cut(s) 353, 385
Asp700I GAANNNNTTC 2 cut(s) 941, 1073
Asp718I GGTACC 1 cut(s) 721
AspLEI GCGC 3 cut(s) 426, 428, 451
AspS9I GGNCC 1 cut(s) 630
AsuC2I CCSGG 1 cut(s) 136
AsuHPI GGTGA 2 cut(s) 1069, 1105
AsuII TTCGAA 1 cut(s) 935
AvaI CYCGRG 1 cut(s) 327
AvaII GGWCC 1 cut(s) 630
BanI GGYRCC 1 cut(s) 721
BanII GRGCYC 2 cut(s) 57, 846
BauI CACGAG 1 cut(s) 1081
BbsI GAAGAC 1 cut(s) 121
BccI CCATC 6 cut(s) 167, 300, 573, 588, 1041, 1118
BceAI ACGGC 2 cut(s) 85, 925
BciT130I CCWGG 4 cut(s) 50, 339, 417, 515
BciVI GTATCC 1 cut(s) 311
BcnI CCSGG 1 cut(s) 136
BcoDI GTCTC 1 cut(s) 239
BfaI CTAG 4 cut(s) 12, 334, 454, 847
BfmI CTRYAG 3 cut(s) 734, 749, 866
BfuI GTATCC 1 cut(s) 311
BisI GCNGC 1 cut(s) 438
BlsI GCNGC 1 cut(s) 439
Bme1390I CCNGG 5 cut(s) 50, 136, 339, 417, 515
Bme18I GGWCC 1 cut(s) 630
BmeT110I CYCGRG 1 cut(s) 327
BmgBI CACGTC 1 cut(s) 344
BmgT120I GGNCC 1 cut(s) 630
BmiI GGNNCC 4 cut(s) 54, 723, 843, 993
BmrFI CCNGG 5 cut(s) 50, 136, 339, 417, 515
BmsI GCATC 3 cut(s) 197, 676, 966
BoxI GACNNNNGTC 1 cut(s) 418
BpiI GAAGAC 1 cut(s) 121
BplI GAGNNNNNCTC 2 cut(s) 983, 1015
Bpu14I TTCGAA 1 cut(s) 935
BpuEI CTTGAG 1 cut(s) 349
BpuMI CCSGG 1 cut(s) 136
Bsa29I ATCGAT 1 cut(s) 684
BsaHI GRCGYC 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 239
BsaJI CCNNGG 7 cut(s) 48, 298, 416, 441, 514, 711, 806
BsaWI WCCGGW 1 cut(s) 205
BsaXI ACNNNNNCTCC 6 cut(s) 746, 776, 833, 863, 911, 941
Bsc4I CCNNNNNNNGG 3 cut(s) 205, 812, 967
Bse118I RCCGGY 1 cut(s) 103
Bse1I ACTGG 4 cut(s) 88, 232, 509, 853
BseAI TCCGGA 1 cut(s) 205
BseBI CCWGG 4 cut(s) 50, 339, 417, 515
BseCI ATCGAT 1 cut(s) 684
BseDI CCNNGG 7 cut(s) 48, 298, 416, 441, 514, 711, 806
BseGI GGATG 2 cut(s) 214, 957
BseLI CCNNNNNNNGG 3 cut(s) 205, 812, 967
BseNI ACTGG 4 cut(s) 88, 232, 509, 853
BsePI GCGCGC 1 cut(s) 424
BseRI GAGGAG 1 cut(s) 770
Bsh1236I CGCG 4 cut(s) 424, 426, 449, 601
Bsh1285I CGRYCG 1 cut(s) 1056
BshFI GGCC 2 cut(s) 107, 303
BshNI GGYRCC 1 cut(s) 721
BshVI ATCGAT 1 cut(s) 684
BsiEI CGRYCG 1 cut(s) 1056
BsiHKCI CYCGRG 1 cut(s) 327
BsiSI CCGG 3 cut(s) 104, 136, 206
BslFI GGGAC 2 cut(s) 759, 828
BslI CCNNNNNNNGG 3 cut(s) 205, 812, 967
BsmAI GTCTC 1 cut(s) 239
BsmFI GGGAC 2 cut(s) 759, 828
BsnI GGCC 2 cut(s) 107, 303
Bso31I GGTCTC 1 cut(s) 239
BsoBI CYCGRG 1 cut(s) 327
Bsp119I TTCGAA 1 cut(s) 935
Bsp1286I GDGCHC 2 cut(s) 57, 846
Bsp13I TCCGGA 1 cut(s) 205
Bsp143I GATC 4 cut(s) 44, 236, 740, 1053
Bsp19I CCATGG 1 cut(s) 806
Bsp68I TCGCGA 1 cut(s) 601
BspACI CCGC 5 cut(s) 438, 803, 824, 917, 923
BspANI GGCC 2 cut(s) 107, 303
BspDI ATCGAT 1 cut(s) 684
BspEI TCCGGA 1 cut(s) 205
BspFNI CGCG 4 cut(s) 424, 426, 449, 601
BspLI GGNNCC 4 cut(s) 54, 723, 843, 993
BspPI GGATC 2 cut(s) 39, 231
BspT104I TTCGAA 1 cut(s) 935
BspT107I GGYRCC 1 cut(s) 721
BspTNI GGTCTC 1 cut(s) 239
BsrFI RCCGGY 1 cut(s) 103
BsrI ACTGG 4 cut(s) 88, 232, 509, 853
BssAI RCCGGY 1 cut(s) 103
BssECI CCNNGG 7 cut(s) 48, 298, 416, 441, 514, 711, 806
BssHII GCGCGC 1 cut(s) 424
BssMI GATC 4 cut(s) 44, 236, 740, 1053
BssNI GRCGYC 1 cut(s) 72
BssSI CACGAG 1 cut(s) 1081
BssT1I CCWWGG 2 cut(s) 298, 806
Bst2BI CACGAG 1 cut(s) 1081
Bst2UI CCWGG 4 cut(s) 50, 339, 417, 515
Bst4CI ACNGT 4 cut(s) 353, 611, 726, 1020
Bst6I CTCTTC 2 cut(s) 578, 875
BstACI GRCGYC 1 cut(s) 72
BstAPI GCANNNNNTGC 1 cut(s) 963
BstBI TTCGAA 1 cut(s) 935
BstC8I GCNNGC 1 cut(s) 426
BstDSI CCRYGG 1 cut(s) 806
BstF5I GGATG 2 cut(s) 214, 957
BstFNI CGCG 4 cut(s) 424, 426, 449, 601
BstHHI GCGC 3 cut(s) 426, 428, 451
BstKTI GATC 4 cut(s) 47, 239, 743, 1056
BstMAI GTCTC 1 cut(s) 239
BstMBI GATC 4 cut(s) 44, 236, 740, 1053
BstMCI CGRYCG 1 cut(s) 1056
BstMWI GCNNNNNNNGC 9 cut(s) 93, 375, 396, 405, 434, 446, 552, 561, 963
BstNI CCWGG 4 cut(s) 50, 339, 417, 515
BstPAI GACNNNNGTC 1 cut(s) 418
BstSCI CCNGG 5 cut(s) 48, 134, 337, 415, 513
BstSFI CTRYAG 3 cut(s) 734, 749, 866
BstUI CGCG 4 cut(s) 424, 426, 449, 601
BstV2I GAAGAC 1 cut(s) 121
Bsu15I ATCGAT 1 cut(s) 684
BsuI GTATCC 1 cut(s) 311
BsuRI GGCC 2 cut(s) 107, 303
BsuTUI ATCGAT 1 cut(s) 684
BtgI CCRYGG 1 cut(s) 806
BtrI CACGTC 1 cut(s) 344
BtsCI GGATG 2 cut(s) 214, 957
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 2 cut(s) 129, 1025
BtuMI TCGCGA 1 cut(s) 601
Cac8I GCNNGC 1 cut(s) 426
CfoI GCGC 3 cut(s) 426, 428, 451
Cfr10I RCCGGY 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 630
ClaI ATCGAT 1 cut(s) 684
CseI GACGC 2 cut(s) 61, 895
Csp6I GTAC 1 cut(s) 722
CviAII CATG 3 cut(s) 78, 807, 1038
CviQI GTAC 1 cut(s) 722
DpnI GATC 4 cut(s) 46, 238, 742, 1055
DpnII GATC 4 cut(s) 44, 236, 740, 1053
DrdI GACNNNNNNGTC 1 cut(s) 509
DseDI GACNNNNNNGTC 1 cut(s) 509
EaeI YGGCCR 1 cut(s) 105
Eam1104I CTCTTC 2 cut(s) 578, 875
EarI CTCTTC 2 cut(s) 578, 875
EciI GGCGGA 2 cut(s) 932, 938
Eco130I CCWWGG 2 cut(s) 298, 806
Eco24I GRGCYC 2 cut(s) 57, 846
Eco31I GGTCTC 1 cut(s) 239
Eco32I GATATC 1 cut(s) 264
Eco47I GGWCC 1 cut(s) 630
Eco88I CYCGRG 1 cut(s) 327
EcoRII CCWGG 4 cut(s) 48, 337, 415, 513
EcoRV GATATC 1 cut(s) 264
EcoT14I CCWWGG 2 cut(s) 298, 806
EcoT38I GRGCYC 2 cut(s) 57, 846
ErhI CCWWGG 2 cut(s) 298, 806
FaeI CATG 3 cut(s) 81, 810, 1041
FalI AAGNNNNNCTT 2 cut(s) 929, 961
FaqI GGGAC 2 cut(s) 759, 828
FatI CATG 3 cut(s) 77, 806, 1037
Fnu4HI GCNGC 1 cut(s) 438
FokI GGATG 2 cut(s) 221, 944
FriOI GRGCYC 2 cut(s) 57, 846
Fsp4HI GCNGC 1 cut(s) 438
FspBI CTAG 4 cut(s) 12, 334, 454, 847
GlaI GCGC 3 cut(s) 425, 427, 450
GluI GCNGC 1 cut(s) 438
HaeIII GGCC 2 cut(s) 107, 303
HapII CCGG 3 cut(s) 104, 136, 206
HgaI GACGC 2 cut(s) 61, 895
HhaI GCGC 3 cut(s) 426, 428, 451
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 3 cut(s) 81, 810, 1041
Hin6I GCGC 3 cut(s) 424, 426, 449
HinP1I GCGC 3 cut(s) 424, 426, 449
HincII GTYRAC 1 cut(s) 180
HindII GTYRAC 1 cut(s) 180
HindIII AAGCTT 1 cut(s) 367
HinfI GANTC 9 cut(s) 126, 310, 323, 362, 510, 647, 926, 932, 1098
HpaII CCGG 3 cut(s) 104, 136, 206
HphI GGTGA 2 cut(s) 1069, 1105
Hpy166II GTNNAC 1 cut(s) 180
Hpy188I TCNGA 5 cut(s) 465, 498, 715, 931, 1127
Hpy8I GTNNAC 1 cut(s) 180
Hpy99I CGWCG 1 cut(s) 187
HpyAV CCTTC 3 cut(s) 12, 652, 712
HpyCH4III ACNGT 4 cut(s) 353, 611, 726, 1020
HpyCH4IV ACGT 2 cut(s) 182, 343
HpyCH4V TGCA 5 cut(s) 546, 621, 639, 689, 957
HpyF10VI GCNNNNNNNGC 9 cut(s) 93, 375, 396, 405, 434, 446, 552, 561, 963
HpySE526I ACGT 2 cut(s) 182, 343
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 3 cut(s) 81, 810, 1041
HspAI GCGC 3 cut(s) 424, 426, 449
Kpn2I TCCGGA 1 cut(s) 205
KpnI GGTACC 1 cut(s) 725
Kzo9I GATC 4 cut(s) 44, 236, 740, 1053
LmnI GCTCC 4 cut(s) 52, 841, 871, 991
LweI GCATC 3 cut(s) 197, 676, 966
MaeI CTAG 4 cut(s) 12, 334, 454, 847
MaeII ACGT 2 cut(s) 182, 343
MaeIII GTNAC 3 cut(s) 73, 213, 792
MalI GATC 4 cut(s) 46, 238, 742, 1055
MboI GATC 4 cut(s) 44, 236, 740, 1053
MboII GAAGA 5 cut(s) 126, 183, 595, 656, 892
MhlI GDGCHC 2 cut(s) 57, 846
MluCI AATT 1 cut(s) 1061
MlyI GAGTC 3 cut(s) 356, 519, 935
MmeI TCCRAC 1 cut(s) 443
MroI TCCGGA 1 cut(s) 205
MroXI GAANNNNTTC 2 cut(s) 941, 1073
MseI TTAA 2 cut(s) 168, 1005
MslI CAYNNNNRTG 2 cut(s) 1042, 1126
MspI CCGG 3 cut(s) 104, 136, 206
MspR9I CCNGG 5 cut(s) 50, 136, 339, 417, 515
MvaI CCWGG 4 cut(s) 50, 339, 417, 515
MvnI CGCG 4 cut(s) 424, 426, 449, 601
MwoI GCNNNNNNNGC 9 cut(s) 93, 375, 396, 405, 434, 446, 552, 561, 963
NciI CCSGG 1 cut(s) 136
NcoI CCATGG 1 cut(s) 806
NdeII GATC 4 cut(s) 44, 236, 740, 1053
NlaIII CATG 3 cut(s) 81, 810, 1041
NlaIV GGNNCC 4 cut(s) 54, 723, 843, 993
NmeAIII GCCGAG 2 cut(s) 466, 947
NmuCI GTSAC 2 cut(s) 73, 792
NruI TCGCGA 1 cut(s) 601
NspV TTCGAA 1 cut(s) 935
PaeR7I CTCGAG 1 cut(s) 327
PauI GCGCGC 1 cut(s) 424
PcsI WCGNNNNNNNCGW 1 cut(s) 1049
PdmI GAANNNNTTC 2 cut(s) 941, 1073
PfeI GAWTC 6 cut(s) 126, 310, 323, 647, 932, 1098
PflFI GACNNNGTC 1 cut(s) 1039
PkrI GCNGC 1 cut(s) 439
Ple19I CGATCG 1 cut(s) 1056
PleI GAGTC 3 cut(s) 356, 518, 934
PpsI GAGTC 3 cut(s) 356, 518, 934
PshAI GACNNNNGTC 1 cut(s) 418
Psp6I CCWGG 4 cut(s) 48, 337, 415, 513
PspGI CCWGG 4 cut(s) 48, 337, 415, 513
PspN4I GGNNCC 4 cut(s) 54, 723, 843, 993
PspPI GGNCC 1 cut(s) 630
PsyI GACNNNGTC 1 cut(s) 1039
PteI GCGCGC 1 cut(s) 424
PvuI CGATCG 1 cut(s) 1056
RruI TCGCGA 1 cut(s) 601
RsaI GTAC 1 cut(s) 723
RsaNI GTAC 1 cut(s) 722
RseI CAYNNNNRTG 2 cut(s) 1042, 1126
SaqAI TTAA 2 cut(s) 168, 1005
SatI GCNGC 1 cut(s) 438
Sau3AI GATC 4 cut(s) 44, 236, 740, 1053
Sau96I GGNCC 1 cut(s) 630
SchI GAGTC 3 cut(s) 356, 519, 935
ScrFI CCNGG 5 cut(s) 50, 136, 339, 417, 515
SduI GDGCHC 2 cut(s) 57, 846
SfaNI GCATC 3 cut(s) 197, 676, 966
SfcI CTRYAG 3 cut(s) 734, 749, 866
Sfr274I CTCGAG 1 cut(s) 327
SfuI TTCGAA 1 cut(s) 935
SinI GGWCC 1 cut(s) 630
SlaI CTCGAG 1 cut(s) 327
SmiMI CAYNNNNRTG 2 cut(s) 1042, 1126
SmlI CTYRAG 2 cut(s) 327, 364
SmoI CTYRAG 2 cut(s) 327, 364
Sse9I AATT 1 cut(s) 1061
SsiI CCGC 5 cut(s) 438, 803, 824, 917, 923
SspI AATATT 2 cut(s) 172, 294
SspMI CTAG 4 cut(s) 12, 334, 454, 847
StyD4I CCNGG 5 cut(s) 48, 134, 337, 415, 513
StyI CCWWGG 2 cut(s) 298, 806
TaaI ACNGT 4 cut(s) 353, 611, 726, 1020
TaiI ACGT 2 cut(s) 185, 346
TasI AATT 1 cut(s) 1061
TauI GCSGC 1 cut(s) 440
TfiI GAWTC 6 cut(s) 126, 310, 323, 647, 932, 1098
Tru1I TTAA 2 cut(s) 168, 1005
Tru9I TTAA 2 cut(s) 168, 1005
TscAI CASTG 2 cut(s) 136, 1025
TseFI GTSAC 2 cut(s) 73, 792
Tsp45I GTSAC 2 cut(s) 73, 792
TspDTI ATGAA 2 cut(s) 94, 639
TspGWI ACGGA 2 cut(s) 515, 991
TspRI CASTG 2 cut(s) 136, 1025
Tth111I GACNNNGTC 1 cut(s) 1039
VpaK11BI GGWCC 1 cut(s) 630
XhoI CTCGAG 1 cut(s) 327
XmnI GAANNNNTTC 2 cut(s) 941, 1073
XspI CTAG 4 cut(s) 12, 334, 454, 847
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.