Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001498

Physical Location & Seq

Genomic Coordinates Forward (+)

64563131 .. 64566868

Gene Structure 3738 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21423

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGTCGCACTTCGGACGATCTGGACCGCCGGACATCAGAGACACCTACTCGCTCCTTGTTCTCAACATCACTTTCCGAACCACCGCCGACGATCTGTTCCCGCTGTTTGATAAGTACGGGAAGGTCGTCGACGTGTTTATCCCCCGAGACCGGAGGACCGGCGATTCGCGCGGCTTCGCTTTTGTGCGGTATAAGTATCAGGATGAGGCGGCCAAGGCCGTGGATAAGCTCGACGGGAGAGTTGTGGATGGGAGAGAGATTATGGTTCAGTTTGCTAAGTATGGTCCAAATGCTGAGAGGATTCACAAGGGAAAGATAAGTGAATCTTCCTCCAAGTTGAAAAGCAGCAGGTCAAGAAGCCGTAGCCCTCGTCCAAGGTATCGAGATGAATATAAGGATAGGGATTACAAGAGGAGAAGTCGCAGTCGAAGTAGGGACAGATATGACCGTGACAGGCACCATAGGAGTGAAAGAGAGCATCGCTACAGAAGCAGGAGCCGCAGTGCAAGTCCTGATAATCGTAAAAGGAGCAAATATGATGACGAGCGGCGTAGTCGGAGCCGGTCCTATGGAAGTGTCTCACCTGCTCGGCCTAGCTCTAAATCTCGAAGGAGCCTCTCTCCTCGTAGGACACCTCCAAGGAGTGAGAGTCCTGATGCACGCCATCGTAATGACCGCTCTCCTACCCCCAAAGATGTCTCACCACAGGCTCGGCGTGAAGATTCTCTAAGTCCTCGTAAATCTGATGCTGATGTGAGCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

254

Amino Acids

29.8

Weight (kDa)

10.87

Isoelectric Point (pI)

91.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	18 - 87	4.4e-20	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64200 AT5G64200
fragaria_vesca	FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_5g37470 FvH4_6g21680
malus_domestica	MD08G1182200.v1.1 MD14G1052000.v1.1 MD15G1367900.v1.1
prunus_persica	Prupe.1G516100_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1 Prupe.7G083500_v2.0.a1
pyrus_communis	pycom08g15600 pycom12g04670 pycom14g04330 pycom15g32980
rosa_chinensis	RchiOBHm_Chr3g0478961 RchiOBHm_Chr7g0239081
rosa_laevigata	RLG00000000784 RLG00000023616
rosa_multiflora	Rmu_sc0004605.1_g000002 Rmu_sc0005645.1_g000001 Rmu_sc0012163.1_g000002
rosa_roxburghii	Rroxscaffold_3G00221270 Rroxscaffold_6G00402870
rosa_rugosa	Rorug03G0169300 Rorug03G0169400 Rorug03G0169400 Rorug03G0169400 Rorug03G0169500 Rorug03G0169600 Rorug07G0325500 Rorug07G0325600 Rorug07G0325700 Rorug07G0325800
rosa_samantha	Rh3AG220800 Rh3BG252800 Rh3CG249500 Rh3DG245500 Rh7AG480000 Rh7CG497500 Rh7DG465100
rosa_wichuraiana	Rw3G019860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	592
Acc36I	ACCTGC	2 cut(s)	339, 592
AccB1I	GGYRCC	1 cut(s)	456
AccBSI	CCGCTC	2 cut(s)	547, 678
AccI	GTMKAC	1 cut(s)	129
AccII	CGCG	2 cut(s)	169, 171
AciI	CCGC	9 cut(s)	26, 84, 101, 171, 187, 209, 499, 547, 676
AcoI	YGGCCR	1 cut(s)	210
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	1 cut(s)	150
AflIII	ACRYGT	1 cut(s)	132
AgsI	TTSAA	1 cut(s)	340
AjiI	CACGTC	1 cut(s)	133
AluBI	AGCT	3 cut(s)	229, 597, 759
AluI	AGCT	3 cut(s)	229, 597, 759
Alw21I	GWGCWC	1 cut(s)	761
Alw26I	GTCTC	4 cut(s)	33, 141, 583, 703
Ama87I	CYCGRG	1 cut(s)	144
AoxI	GGCC	3 cut(s)	210, 216, 590
ApeKI	GCWGC	1 cut(s)	345
ArsI	GACNNNNNNTTYG	2 cut(s)	148, 180
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	4 cut(s)	23, 156, 284, 564
AsuHPI	GGTGA	2 cut(s)	573, 693
AvaI	CYCGRG	1 cut(s)	144
AvaII	GGWCC	4 cut(s)	23, 156, 284, 564
BanI	GGYRCC	1 cut(s)	456
BanII	GRGCYC	1 cut(s)	761
Bbv12I	GWGCWC	1 cut(s)	761
BbvI	GCAGC	1 cut(s)	357
BccI	CCATC	2 cut(s)	242, 672
BceAI	ACGGC	2 cut(s)	203, 345
BcoDI	GTCTC	4 cut(s)	33, 141, 583, 703
BfaI	CTAG	1 cut(s)	594
BfmI	CTRYAG	1 cut(s)	484
BfuAI	ACCTGC	2 cut(s)	339, 592
BisI	GCNGC	5 cut(s)	172, 210, 346, 499, 548
BlsI	GCNGC	5 cut(s)	173, 211, 347, 500, 549
Bme18I	GGWCC	4 cut(s)	23, 156, 284, 564
BmeT110I	CYCGRG	1 cut(s)	144
BmgBI	CACGTC	1 cut(s)	133
BmgT120I	GGNCC	4 cut(s)	23, 156, 284, 564
BmiI	GGNNCC	4 cut(s)	458, 497, 560, 614
BmsI	GCATC	3 cut(s)	487, 646, 736
BplI	GAGNNNNNCTC	2 cut(s)	604, 636
BsaI	GGTCTC	1 cut(s)	141
BsaJI	CCNNGG	4 cut(s)	213, 219, 374, 638
BsaWI	WCCGGW	1 cut(s)	150
BsaXI	ACNNNNNCTCC	4 cut(s)	487, 517, 634, 664
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
Bse118I	RCCGGY	2 cut(s)	158, 561
BseDI	CCNNGG	4 cut(s)	213, 219, 374, 638
BseGI	GGATG	2 cut(s)	208, 253
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseMII	CTCAG	1 cut(s)	285
BseRI	GAGGAG	2 cut(s)	427, 612
BseXI	GCAGC	1 cut(s)	357
Bsh1236I	CGCG	2 cut(s)	169, 171
BshFI	GGCC	3 cut(s)	212, 218, 592
BshNI	GGYRCC	1 cut(s)	456
BsiHKAI	GWGCWC	1 cut(s)	761
BsiHKCI	CYCGRG	1 cut(s)	144
BsiSI	CCGG	4 cut(s)	29, 151, 159, 562
BslFI	GGGAC	1 cut(s)	449
BslI	CCNNNNNNNGG	1 cut(s)	150
BsmAI	GTCTC	4 cut(s)	33, 141, 583, 703
BsmFI	GGGAC	1 cut(s)	449
BsnI	GGCC	3 cut(s)	212, 218, 592
Bso31I	GGTCTC	1 cut(s)	141
BsoBI	CYCGRG	1 cut(s)	144
Bsp1286I	GDGCHC	1 cut(s)	761
Bsp143I	GATC	2 cut(s)	17, 91
BspACI	CCGC	9 cut(s)	26, 84, 101, 171, 187, 209, 499, 547, 676
BspANI	GGCC	3 cut(s)	212, 218, 592
BspCNI	CTCAG	1 cut(s)	286
BspFNI	CGCG	2 cut(s)	169, 171
BspLI	GGNNCC	4 cut(s)	458, 497, 560, 614
BspMI	ACCTGC	2 cut(s)	339, 592
BspT107I	GGYRCC	1 cut(s)	456
BspTNI	GGTCTC	1 cut(s)	141
BsrBI	CCGCTC	2 cut(s)	547, 678
BsrFI	RCCGGY	2 cut(s)	158, 561
BssAI	RCCGGY	2 cut(s)	158, 561
BssECI	CCNNGG	4 cut(s)	213, 219, 374, 638
BssMI	GATC	2 cut(s)	17, 91
BssT1I	CCWWGG	3 cut(s)	213, 374, 638
Bst4CI	ACNGT	1 cut(s)	449
BstC8I	GCNNGC	1 cut(s)	661
BstDEI	CTNAG	3 cut(s)	276, 294, 728
BstDSI	CCRYGG	1 cut(s)	219
BstF5I	GGATG	2 cut(s)	208, 253
BstFNI	CGCG	2 cut(s)	169, 171
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	2 cut(s)	20, 94
BstMAI	GTCTC	4 cut(s)	33, 141, 583, 703
BstMBI	GATC	2 cut(s)	17, 91
BstMWI	GCNNNNNNNGC	4 cut(s)	168, 215, 489, 498
BstSFI	CTRYAG	1 cut(s)	484
BstUI	CGCG	2 cut(s)	169, 171
BstV1I	GCAGC	1 cut(s)	357
BstXI	CCANNNNNNTGG	1 cut(s)	220
BsuRI	GGCC	3 cut(s)	212, 218, 592
BtgI	CCRYGG	1 cut(s)	219
BtgZI	GCGATG	1 cut(s)	464
BtrI	CACGTC	1 cut(s)	133
BtsCI	GGATG	2 cut(s)	208, 253
BtsI	GCAGTG	1 cut(s)	508
BtsIMutI	CAGTG	1 cut(s)	508
BveI	ACCTGC	2 cut(s)	339, 592
Cac8I	GCNNGC	1 cut(s)	661
CfoI	GCGC	1 cut(s)	171
Cfr10I	RCCGGY	2 cut(s)	158, 561
Cfr13I	GGNCC	4 cut(s)	23, 156, 284, 564
Csp6I	GTAC	1 cut(s)	115
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	3 cut(s)	276, 294, 728
DpnI	GATC	2 cut(s)	19, 93
DpnII	GATC	2 cut(s)	17, 91
EaeI	YGGCCR	1 cut(s)	210
Ecl136II	GAGCTC	1 cut(s)	759
Eco130I	CCWWGG	3 cut(s)	213, 374, 638
Eco24I	GRGCYC	1 cut(s)	761
Eco31I	GGTCTC	1 cut(s)	141
Eco47I	GGWCC	4 cut(s)	23, 156, 284, 564
Eco53kI	GAGCTC	1 cut(s)	759
Eco88I	CYCGRG	1 cut(s)	144
EcoICRI	GAGCTC	1 cut(s)	759
EcoT14I	CCWWGG	3 cut(s)	213, 374, 638
EcoT38I	GRGCYC	1 cut(s)	761
ErhI	CCWWGG	3 cut(s)	213, 374, 638
FaiI	YATR	9 cut(s)	192, 263, 282, 393, 444, 462, 537, 570, 763
FalI	AAGNNNNNCTT	2 cut(s)	310, 342
FaqI	GGGAC	1 cut(s)	449
FauI	CCCGC	1 cut(s)	108
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	5 cut(s)	172, 210, 346, 499, 548
FokI	GGATG	2 cut(s)	215, 260
FriOI	GRGCYC	1 cut(s)	761
Fsp4HI	GCNGC	5 cut(s)	172, 210, 346, 499, 548
FspBI	CTAG	1 cut(s)	594
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	5 cut(s)	172, 210, 346, 499, 548
HaeIII	GGCC	3 cut(s)	212, 218, 592
HapII	CCGG	4 cut(s)	29, 151, 159, 562
HhaI	GCGC	1 cut(s)	171
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	5 cut(s)	164, 301, 323, 649, 722
HpaII	CCGG	4 cut(s)	29, 151, 159, 562
HphI	GGTGA	2 cut(s)	573, 693
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	5 cut(s)	14, 38, 77, 558, 745
Hpy188III	TCNNGA	7 cut(s)	21, 200, 354, 383, 512, 606, 653
Hpy8I	GTNNAC	1 cut(s)	130
Hpy99I	CGWCG	4 cut(s)	92, 131, 134, 236
HpyAV	CCTTC	2 cut(s)	115, 603
HpyCH4III	ACNGT	1 cut(s)	449
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	2 cut(s)	506, 659
HpyF10VI	GCNNNNNNNGC	4 cut(s)	168, 215, 489, 498
HpyF3I	CTNAG	3 cut(s)	276, 294, 728
HpySE526I	ACGT	1 cut(s)	132
HspAI	GCGC	1 cut(s)	169
Kzo9I	GATC	2 cut(s)	17, 91
LmnI	GCTCC	5 cut(s)	57, 495, 528, 558, 612
Lsp1109I	GCAGC	1 cut(s)	357
LweI	GCATC	3 cut(s)	487, 646, 736
MaeI	CTAG	1 cut(s)	594
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	1 cut(s)	449
MalI	GATC	2 cut(s)	19, 93
MbiI	CCGCTC	2 cut(s)	547, 678
MboI	GATC	2 cut(s)	17, 91
MboII	GAAGA	2 cut(s)	318, 731
MhlI	GDGCHC	1 cut(s)	761
MlyI	GAGTC	1 cut(s)	658
MmeI	TCCRAC	1 cut(s)	536
MslI	CAYNNNNRTG	2 cut(s)	465, 669
MspA1I	CMGCKG	1 cut(s)	103
MspI	CCGG	4 cut(s)	29, 151, 159, 562
MvnI	CGCG	2 cut(s)	169, 171
MwoI	GCNNNNNNNGC	4 cut(s)	168, 215, 489, 498
NdeII	GATC	2 cut(s)	17, 91
NlaIV	GGNNCC	4 cut(s)	458, 497, 560, 614
NmeAIII	GCCGAG	2 cut(s)	568, 691
NmuCI	GTSAC	1 cut(s)	449
PaqCI	CACCTGC	1 cut(s)	592
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PfeI	GAWTC	4 cut(s)	164, 301, 323, 722
PkrI	GCNGC	5 cut(s)	173, 211, 347, 500, 549
PleI	GAGTC	1 cut(s)	657
PpsI	GAGTC	1 cut(s)	657
Psp124BI	GAGCTC	1 cut(s)	761
PspN4I	GGNNCC	4 cut(s)	458, 497, 560, 614
PspPI	GGNCC	4 cut(s)	23, 156, 284, 564
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
RseI	CAYNNNNRTG	2 cut(s)	465, 669
SacI	GAGCTC	1 cut(s)	761
SalI	GTCGAC	1 cut(s)	128
SatI	GCNGC	5 cut(s)	172, 210, 346, 499, 548
Sau3AI	GATC	2 cut(s)	17, 91
Sau96I	GGNCC	4 cut(s)	23, 156, 284, 564
SchI	GAGTC	1 cut(s)	658
SduI	GDGCHC	1 cut(s)	761
SfaNI	GCATC	3 cut(s)	487, 646, 736
SfcI	CTRYAG	1 cut(s)	484
SgrDI	CGTCGACG	1 cut(s)	128
SinI	GGWCC	4 cut(s)	23, 156, 284, 564
SmiMI	CAYNNNNRTG	2 cut(s)	465, 669
SsiI	CCGC	9 cut(s)	26, 84, 101, 171, 187, 209, 499, 547, 676
SspMI	CTAG	1 cut(s)	594
SstI	GAGCTC	1 cut(s)	761
StyI	CCWWGG	3 cut(s)	213, 374, 638
TaaI	ACNGT	1 cut(s)	449
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	5 cut(s)	129, 231, 382, 427, 607
TauI	GCSGC	4 cut(s)	174, 212, 501, 550
TfiI	GAWTC	4 cut(s)	164, 301, 323, 722
TscAI	CASTG	1 cut(s)	508
TseFI	GTSAC	1 cut(s)	449
TseI	GCWGC	1 cut(s)	345
Tsp45I	GTSAC	1 cut(s)	449
TspDTI	ATGAA	1 cut(s)	402
TspRI	CASTG	1 cut(s)	508
VpaK11BI	GGWCC	4 cut(s)	23, 156, 284, 564
XmiI	GTMKAC	1 cut(s)	129
XspI	CTAG	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.