Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002608

Physical Location & Seq

Genomic Coordinates Forward (+)

26296025 .. 26298091

Gene Structure 2067 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G65720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGGCGTCTAAGGTAATCTCTGCCACAATCCGCAGAACCCTAACCAAACCACACGGCACTTTTTCCCGGTGTCGCTACTTATCAACCGCCGCTGCTGCGACGGAGGTGAATTACGAGGATGAATCGATTATGATGAAAGGAGTTCGAATTTCAGGTAGACCTCTTTACTTAGATATGCAAGCGACGACTCCGATTGATCCTAGAGTATTCGATGCGATGAATGCTTCACAGATCCATGAGTATGGGAATCCTCACTCGCGAACGCATCTCTACGGCTGGGAAGCTGAGAACGCCGTCGAGAACGCACGAAACCAGGTCGCGAAACTGATCGAAGCTTCACCGAAGGAGATCGTATTCGTGTCCGGTGCAACGGAGGCGAACAATATGGCGGTGAAAGGAGTGATGCACTTTTACAAGGACACGAAGAAACATGTGATAACTACACAGACTGAGCATAAGTGTGTGCTTGATTCGTGTAGGCATTTGCAGCAAGAAGGATTTGAGGTAACTTATTTACCTGTGAAAACTGATGGATTGGTTGATTTAGAGATGTTGAGAGAAGCTATTAGGCCAGACACAGGGCTAGTTTCTATTATGGCTGTGAACAATGAGATTGGTGTGGTTCAACCTATGGAGGAGATTGGTATGATTTGCAAAGAGCATAATGTTCCGTTTCATACTGATGCTGCTCAAGCTATTGGGAAGATACCTGTTGATGTTAAGAAGTGGAATGTTGCTTTGATGTCTATGAGTGCTCACAAGATCTATGGACCGAAAGGTGTTGGTGCTTTGTATGTGAGGAGGAGGCCGAGAATCAGGCTTGAGCCGTTGATGAATGGTGGAGGTCAGGAGAGGGGATTGCGTAGTGGTACGGGGGCTACGCAGCAGATTGTTGGGTTCGGGGCTGCTTGTGAGTTGGCTATGAAGGAGATGGAGTATGATGAGAAGTGGATTAAGGGGTTACAGGAGAGGTTGCTGAATGGGGTTAGAGAGAAGCTTGATGGTGTTGTGGTGAATGGTTCAATGGATAGTCGATATGTAGGGAATTTGAATTTGTCGTTTGCTTATGTTGAAGGAGAGAGTTTGTTGATGGGATTGAAGGAAGTTGCAGTGTCTAGTGGAAGTGCTTGTACTAGTGCGAGTTTGGAGCCTTCTTATGTGTTGAGAGCTTTGGGTGTGGATGAAGACATGGCTCACACTTCGATTAGGTTTGGGATTGGTAGGTTTACCACGAAGGAAGAGATTGATAAAGCGGTCGAGCTTACGGTTAAACAAGTTGAGAAGTTGAGGGAAATGAGCCCGCTTTATGAAATGGTTAAAGAAGGTATCGATATCAAGAACATTCAATGGTCTCAACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006790 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016043 GO:0016226 GO:0016740 GO:0016782 GO:0016783 GO:0017076 GO:0022607 GO:0030554 GO:0031071 GO:0031163 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0051186 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 ko04122 map00730 map01100 map04122

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

453

Amino Acids

50.3

Weight (kDa)

6.52

Isoelectric Point (pI)

38.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_5	PF00266	56 - 417	4.3e-88	Aminotransferase class-V
Beta_elim_lyase	PF01212	98 - 231	2.5e-09	Beta-eliminating lyase
DegT_DnrJ_EryC1	PF01041	115 - 234	5.7e-09	DegT/DnrJ/EryC1/StrS aminotransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65720 AT5G65720 AT5G65720
fragaria_vesca	FvH4_1g18610 FvH4_3g39110 FvH4_4g11530
malus_domestica	MD15G1303800.v1.1
prunus_persica	Prupe.6G213300_v2.0.a1
pyrus_communis	pycom02g15750 pycom02g15760 pycom12g09240 pycom14g03250 pycom15g26680
rosa_chinensis	RchiOBHm_Chr2g0109351 RchiOBHm_Chr2g0109391 RchiOBHm_Chr5g0045361
rosa_laevigata	RLG00000017733
rosa_multiflora	Rmu_sc0000332.1_g000011 Rmu_sc0001940.1_g000003 Rmu_sc0012764.1_g000010
rosa_roxburghii	Rroxscaffold_2G00134280
rosa_rugosa	Rorug02G0159500
rosa_samantha	Rh2AG211300 Rh2AG211600 Rh2BG221300 Rh2BG221400 Rh2BG221500 Rh2BG222000 Rh2CG213300 Rh2CG213900 Rh2DG217100 Rh2DG217400 Rh4BG181900 Rh5AG243200 Rh5BG312000 Rh5DG322600 Rh6CG498200 Rh7BG128000
rosa_wichuraiana	Rw5G028200 Rw5G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	157
AccII	CGCG	2 cut(s)	259, 320
AciI	CCGC	6 cut(s)	31, 87, 90, 389, 1253, 1301
AclWI	GGATC	2 cut(s)	191, 226
AcsI	RAATTY	3 cut(s)	147, 1045, 1051
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	871, 1132
AfiI	CCNNNNNNNGG	1 cut(s)	578
AflIII	ACRYGT	1 cut(s)	430
AgsI	TTSAA	6 cut(s)	626, 1023, 1051, 1073, 1099, 1346
AhlI	ACTAGT	1 cut(s)	1133
AjnI	CCWGG	1 cut(s)	312
AluBI	AGCT	7 cut(s)	284, 335, 563, 695, 997, 1169, 1261
AluI	AGCT	7 cut(s)	284, 335, 563, 695, 997, 1169, 1261
Alw21I	GWGCWC	1 cut(s)	757
Alw26I	GTCTC	1 cut(s)	1356
AlwI	GGATC	2 cut(s)	191, 226
AoxI	GGCC	2 cut(s)	569, 806
ApeKI	GCWGC	6 cut(s)	92, 95, 487, 686, 883, 905
ApoI	RAATTY	3 cut(s)	147, 1045, 1051
AspS9I	GGNCC	1 cut(s)	770
AsuC2I	CCSGG	1 cut(s)	67
AsuHPI	GGTGA	4 cut(s)	118, 330, 403, 1024
AsuII	TTCGAA	1 cut(s)	145
AvaII	GGWCC	1 cut(s)	770
BanII	GRGCYC	1 cut(s)	1301
BarI	GAAGNNNNNNTAC	2 cut(s)	1114, 1146
BbsI	GAAGAC	1 cut(s)	1191
Bbv12I	GWGCWC	1 cut(s)	757
BbvI	GCAGC	6 cut(s)	79, 82, 499, 673, 892, 895
BccI	CCATC	4 cut(s)	524, 925, 995, 1084
BceAI	ACGGC	4 cut(s)	70, 278, 289, 811
BciT130I	CCWGG	1 cut(s)	314
BcnI	CCSGG	1 cut(s)	67
BcoDI	GTCTC	1 cut(s)	1356
BcuI	ACTAGT	1 cut(s)	1133
BfaI	CTAG	4 cut(s)	201, 584, 1116, 1134
BglII	AGATCT	1 cut(s)	762
BisI	GCNGC	7 cut(s)	90, 93, 96, 488, 687, 884, 906
BlsI	GCNGC	7 cut(s)	91, 94, 97, 489, 688, 885, 907
Bme1390I	CCNGG	2 cut(s)	67, 314
Bme18I	GGWCC	1 cut(s)	770
BmgT120I	GGNCC	1 cut(s)	770
BmiI	GGNNCC	1 cut(s)	1149
BmrFI	CCNGG	2 cut(s)	67, 314
BmsI	GCATC	4 cut(s)	202, 274, 393, 673
BpiI	GAAGAC	1 cut(s)	1191
Bpu14I	TTCGAA	1 cut(s)	145
BpuEI	CTTGAG	2 cut(s)	675, 842
BpuMI	CCSGG	1 cut(s)	67
Bsa29I	ATCGAT	2 cut(s)	125, 1329
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	1356
BsaWI	WCCGGW	1 cut(s)	362
BsaXI	ACNNNNNCTCC	2 cut(s)	920, 950
Bsc4I	CCNNNNNNNGG	1 cut(s)	578
BseBI	CCWGG	1 cut(s)	314
BseCI	ATCGAT	2 cut(s)	125, 1329
BseGI	GGATG	2 cut(s)	124, 1186
BseLI	CCNNNNNNNGG	1 cut(s)	578
BseMII	CTCAG	2 cut(s)	276, 441
BseRI	GAGGAG	3 cut(s)	650, 814, 817
BseXI	GCAGC	6 cut(s)	79, 82, 499, 673, 892, 895
BseYI	CCCAGC	1 cut(s)	276
Bsh1236I	CGCG	2 cut(s)	259, 320
Bsh1285I	CGRYCG	1 cut(s)	1257
BshFI	GGCC	2 cut(s)	571, 808
BshVI	ATCGAT	2 cut(s)	125, 1329
BsiEI	CGRYCG	1 cut(s)	1257
BsiHKAI	GWGCWC	1 cut(s)	757
BsiSI	CCGG	2 cut(s)	67, 363
BslI	CCNNNNNNNGG	1 cut(s)	578
BsmAI	GTCTC	1 cut(s)	1356
BsmI	GAATGC	1 cut(s)	226
BsnI	GGCC	2 cut(s)	571, 808
Bso31I	GGTCTC	1 cut(s)	1356
Bsp119I	TTCGAA	1 cut(s)	145
Bsp1286I	GDGCHC	2 cut(s)	757, 1301
Bsp143I	GATC	5 cut(s)	196, 231, 327, 348, 762
Bsp68I	TCGCGA	2 cut(s)	259, 320
BspACI	CCGC	6 cut(s)	31, 87, 90, 389, 1253, 1301
BspANI	GGCC	2 cut(s)	571, 808
BspCNI	CTCAG	2 cut(s)	277, 442
BspDI	ATCGAT	2 cut(s)	125, 1329
BspFNI	CGCG	2 cut(s)	259, 320
BspLI	GGNNCC	1 cut(s)	1149
BspPI	GGATC	2 cut(s)	191, 226
BspT104I	TTCGAA	1 cut(s)	145
BspTNI	GGTCTC	1 cut(s)	1356
BssMI	GATC	5 cut(s)	196, 231, 327, 348, 762
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	314
Bst4CI	ACNGT	1 cut(s)	1267
Bst6I	CTCTTC	1 cut(s)	1233
BstACI	GRCGYC	1 cut(s)	5
BstBI	TTCGAA	1 cut(s)	145
BstC8I	GCNNGC	2 cut(s)	180, 1301
BstDEI	CTNAG	4 cut(s)	9, 169, 285, 450
BstF5I	GGATG	2 cut(s)	124, 1186
BstFNI	CGCG	2 cut(s)	259, 320
BstKTI	GATC	5 cut(s)	199, 234, 330, 351, 765
BstMAI	GTCTC	1 cut(s)	1356
BstMBI	GATC	5 cut(s)	196, 231, 327, 348, 762
BstMCI	CGRYCG	1 cut(s)	1257
BstMWI	GCNNNNNNNGC	6 cut(s)	95, 221, 290, 374, 487, 692
BstNI	CCWGG	1 cut(s)	314
BstNSI	RCATGY	1 cut(s)	434
BstSCI	CCNGG	2 cut(s)	65, 312
BstUI	CGCG	2 cut(s)	259, 320
BstV1I	GCAGC	6 cut(s)	79, 82, 499, 673, 892, 895
BstV2I	GAAGAC	1 cut(s)	1191
BstX2I	RGATCY	2 cut(s)	231, 762
BstXI	CCANNNNNNTGG	1 cut(s)	242
BstYI	RGATCY	2 cut(s)	231, 762
Bsu15I	ATCGAT	2 cut(s)	125, 1329
BsuRI	GGCC	2 cut(s)	571, 808
BsuTUI	ATCGAT	2 cut(s)	125, 1329
BtgZI	GCGATG	1 cut(s)	230
BtsCI	GGATG	2 cut(s)	124, 1186
BtsI	GCAGTG	1 cut(s)	1116
BtsIMutI	CAGTG	2 cut(s)	1116, 1357
BtuMI	TCGCGA	2 cut(s)	259, 320
Cac8I	GCNNGC	2 cut(s)	180, 1301
Cfr13I	GGNCC	1 cut(s)	770
ClaI	ATCGAT	2 cut(s)	125, 1329
CsiI	ACCWGGT	1 cut(s)	312
Csp6I	GTAC	2 cut(s)	870, 1131
CviAII	CATG	3 cut(s)	236, 431, 1189
CviQI	GTAC	2 cut(s)	870, 1131
DdeI	CTNAG	4 cut(s)	9, 169, 285, 450
DpnI	GATC	5 cut(s)	198, 233, 329, 350, 764
DpnII	GATC	5 cut(s)	196, 231, 327, 348, 762
Eam1104I	CTCTTC	1 cut(s)	1233
EarI	CTCTTC	1 cut(s)	1233
Eco24I	GRGCYC	1 cut(s)	1301
Eco31I	GGTCTC	1 cut(s)	1356
Eco32I	GATATC	1 cut(s)	1333
Eco47I	GGWCC	1 cut(s)	770
EcoRII	CCWGG	1 cut(s)	312
EcoRV	GATATC	1 cut(s)	1333
EcoT38I	GRGCYC	1 cut(s)	1301
FaeI	CATG	3 cut(s)	239, 434, 1192
FatI	CATG	3 cut(s)	235, 430, 1188
FauI	CCCGC	1 cut(s)	1308
FblI	GTMKAC	1 cut(s)	157
Fnu4HI	GCNGC	7 cut(s)	90, 93, 96, 488, 687, 884, 906
FokI	GGATG	2 cut(s)	131, 1193
FriOI	GRGCYC	1 cut(s)	1301
Fsp4HI	GCNGC	7 cut(s)	90, 93, 96, 488, 687, 884, 906
FspBI	CTAG	4 cut(s)	201, 584, 1116, 1134
GluI	GCNGC	7 cut(s)	90, 93, 96, 488, 687, 884, 906
GsaI	CCCAGC	1 cut(s)	280
HaeIII	GGCC	2 cut(s)	571, 808
HapII	CCGG	2 cut(s)	67, 363
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	239, 434, 1192
HindIII	AAGCTT	2 cut(s)	333, 995
HinfI	GANTC	5 cut(s)	122, 187, 247, 470, 813
HpaII	CCGG	2 cut(s)	67, 363
HphI	GGTGA	4 cut(s)	118, 330, 403, 1024
Hpy166II	GTNNAC	3 cut(s)	158, 604, 1227
Hpy188I	TCNGA	1 cut(s)	192
Hpy188III	TCNNGA	5 cut(s)	258, 298, 319, 848, 1336
Hpy8I	GTNNAC	3 cut(s)	158, 604, 1227
Hpy99I	CGWCG	3 cut(s)	103, 187, 299
HpyAV	CCTTC	8 cut(s)	337, 488, 919, 1067, 1093, 1161, 1228, 1316
HpyCH4III	ACNGT	1 cut(s)	1267
HpyCH4V	TGCA	6 cut(s)	178, 368, 406, 487, 654, 1109
HpyF10VI	GCNNNNNNNGC	6 cut(s)	95, 221, 290, 374, 487, 692
HpyF3I	CTNAG	4 cut(s)	9, 169, 285, 450
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	239, 434, 1192
Kzo9I	GATC	5 cut(s)	196, 231, 327, 348, 762
LmnI	GCTCC	1 cut(s)	1147
Lsp1109I	GCAGC	6 cut(s)	79, 82, 499, 673, 892, 895
LweI	GCATC	4 cut(s)	202, 274, 393, 673
MabI	ACCWGGT	1 cut(s)	312
MaeI	CTAG	4 cut(s)	201, 584, 1116, 1134
MaeIII	GTNAC	2 cut(s)	505, 960
MalI	GATC	5 cut(s)	198, 233, 329, 350, 764
MboI	GATC	5 cut(s)	196, 231, 327, 348, 762
MboII	GAAGA	4 cut(s)	436, 715, 1196, 1250
MflI	RGATCY	2 cut(s)	231, 762
MhlI	GDGCHC	2 cut(s)	757, 1301
MluCI	AATT	4 cut(s)	109, 147, 1045, 1051
MlyI	GAGTC	1 cut(s)	181
MseI	TTAA	4 cut(s)	720, 954, 1269, 1317
MslI	CAYNNNNRTG	3 cut(s)	240, 459, 681
MspA1I	CMGCKG	1 cut(s)	92
MspI	CCGG	2 cut(s)	67, 363
MspR9I	CCNGG	2 cut(s)	67, 314
Mva1269I	GAATGC	1 cut(s)	226
MvaI	CCWGG	1 cut(s)	314
MvnI	CGCG	2 cut(s)	259, 320
MwoI	GCNNNNNNNGC	6 cut(s)	95, 221, 290, 374, 487, 692
NciI	CCSGG	1 cut(s)	67
NdeII	GATC	5 cut(s)	196, 231, 327, 348, 762
NlaIII	CATG	3 cut(s)	239, 434, 1192
NlaIV	GGNNCC	1 cut(s)	1149
NmeAIII	GCCGAG	1 cut(s)	834
NruI	TCGCGA	2 cut(s)	259, 320
NspI	RCATGY	1 cut(s)	434
NspV	TTCGAA	1 cut(s)	145
PciI	ACATGT	1 cut(s)	430
PctI	GAATGC	1 cut(s)	226
PfeI	GAWTC	4 cut(s)	122, 247, 470, 813
PkrI	GCNGC	7 cut(s)	91, 94, 97, 489, 688, 885, 907
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
PscI	ACATGT	1 cut(s)	430
Psp6I	CCWGG	1 cut(s)	312
PspFI	CCCAGC	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	1 cut(s)	1149
PspPI	GGNCC	1 cut(s)	770
PsuI	RGATCY	2 cut(s)	231, 762
RruI	TCGCGA	2 cut(s)	259, 320
RsaI	GTAC	2 cut(s)	871, 1132
RsaNI	GTAC	2 cut(s)	870, 1131
RseI	CAYNNNNRTG	3 cut(s)	240, 459, 681
SaqAI	TTAA	4 cut(s)	720, 954, 1269, 1317
SatI	GCNGC	7 cut(s)	90, 93, 96, 488, 687, 884, 906
Sau3AI	GATC	5 cut(s)	196, 231, 327, 348, 762
Sau96I	GGNCC	1 cut(s)	770
SchI	GAGTC	1 cut(s)	181
ScrFI	CCNGG	2 cut(s)	67, 314
SduI	GDGCHC	2 cut(s)	757, 1301
SexAI	ACCWGGT	1 cut(s)	312
SfaNI	GCATC	4 cut(s)	202, 274, 393, 673
SfuI	TTCGAA	1 cut(s)	145
SinI	GGWCC	1 cut(s)	770
SmiMI	CAYNNNNRTG	3 cut(s)	240, 459, 681
SmlI	CTYRAG	2 cut(s)	690, 821
SmoI	CTYRAG	2 cut(s)	690, 821
SpeI	ACTAGT	1 cut(s)	1133
Sse9I	AATT	4 cut(s)	109, 147, 1045, 1051
SsiI	CCGC	6 cut(s)	31, 87, 90, 389, 1253, 1301
SspMI	CTAG	4 cut(s)	201, 584, 1116, 1134
StyD4I	CCNGG	2 cut(s)	65, 312
TaaI	ACNGT	1 cut(s)	1267
TaqI	TCGA	9 cut(s)	125, 145, 210, 297, 330, 1033, 1202, 1257, 1329
TaqII	GACCGA	1 cut(s)	787
TasI	AATT	4 cut(s)	109, 147, 1045, 1051
TatI	WGTACW	1 cut(s)	1130
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	4 cut(s)	122, 247, 470, 813
Tru1I	TTAA	4 cut(s)	720, 954, 1269, 1317
Tru9I	TTAA	4 cut(s)	720, 954, 1269, 1317
TscAI	CASTG	1 cut(s)	1116
TseI	GCWGC	6 cut(s)	92, 95, 487, 686, 883, 905
TspDTI	ATGAA	8 cut(s)	135, 149, 233, 665, 848, 938, 1197, 1323
TspGWI	ACGGA	3 cut(s)	116, 386, 660
TspRI	CASTG	1 cut(s)	1116
VpaK11BI	GGWCC	1 cut(s)	770
XapI	RAATTY	3 cut(s)	147, 1045, 1051
XceI	RCATGY	1 cut(s)	434
XmiI	GTMKAC	1 cut(s)	157
XspI	CTAG	4 cut(s)	201, 584, 1116, 1134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.