Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002608

Physical Location & Seq

Genomic Coordinates Reverse (-)

21698102 .. 21699565

Gene Structure 1464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g26680.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTCGGTGGCCTTTAAGGCAATCCCTTTACCCCCTGCGCCTTCATCACAACACCACCAAAACGACGCAAACGACGTCCGCCTAAAAACAAAAATGGCATCGAAGCTACTTGCTTCCGCTATCCGCCGCCAAACCCTAACCACAAAACCCGCCTCCACCGCCTCCGACTTCGTCCGCACCCTCTCCACCGCCGCCGCCGTCGCCGAAACCTACGACGACCCAGATGGAGTTTCAATGAAGGGGGTCAAAATTTCTGGCCGGCCTCTGTACCTGGACATGCAGGCCACGTCGCCGGTGGACCCCAGGGTCGTCGACGCCATGAATGGAGGTGGACAGGAGAGAGGGATTCGGAGCGGAACTGTTCCGACTCCATTGGTGGTAGGGTTTGGTGCGGCCTGCGAAATTGCGAAGAAGGAAATGGAGTATGATGAGAAGAGGGTAAGAGCGTTGCAGGATCGAATGTTAAAGGGAATCAGGAAGAACCTTGATATGGTTGTGGTGAATGGTAGCGAGGAGAGACGTTACCCTGGAAATTTGAATCTTTCGTTTGCTTATGTGGAAGGGGAGAGCTTGTTGATGGGTTTGAAGGAAGTGGCGGTGTCGAGTGGGAGTGCCTGTACCAGTGCGAGTTTGGAGCCCTCATACGTGTTGAGGGCTTTGGGGGTGGATGAGGACATGGCTCATACTTCTATTCGGTTTGGGATTGGGCGGTTCACAACGGAGGAGGAGATTGACCGGGCGGTTCAGCTGACGGTGCAGCAGGTGAAGAAGTTGAGGGAGTTGAGCCCGCTTTATGAGATGGTGAAAGAAGGGATTGATATCAAGAGTATTCAGTGGTCACAGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006790 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016043 GO:0016226 GO:0016740 GO:0016782 GO:0016783 GO:0017076 GO:0022607 GO:0030554 GO:0031071 GO:0031163 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0051186 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 ko04122 map00730 map01100 map04122

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

283

Amino Acids

30.77

Weight (kDa)

7.74

Isoelectric Point (pI)

41.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65720 AT5G65720 AT5G65720
fragaria_vesca	FvH4_1g18610 FvH4_3g39110 FvH4_4g11530
malus_domestica	MD15G1303800.v1.1
prunus_persica	Prupe.6G213300_v2.0.a1
pyrus_communis	pycom02g15750 pycom02g15760 pycom12g09240 pycom14g03250 pycom15g26680
rosa_chinensis	RchiOBHm_Chr2g0109351 RchiOBHm_Chr2g0109391 RchiOBHm_Chr5g0045361
rosa_laevigata	RLG00000017733
rosa_multiflora	Rmu_sc0000332.1_g000011 Rmu_sc0001940.1_g000003 Rmu_sc0012764.1_g000010
rosa_roxburghii	Rroxscaffold_2G00134280
rosa_rugosa	Rorug02G0159500
rosa_samantha	Rh2AG211300 Rh2AG211600 Rh2BG221300 Rh2BG221400 Rh2BG221500 Rh2BG222000 Rh2CG213300 Rh2CG213900 Rh2DG217100 Rh2DG217400 Rh4BG181900 Rh5AG243200 Rh5BG312000 Rh5DG322600 Rh6CG498200 Rh7BG128000
rosa_wichuraiana	Rw5G028200 Rw5G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	751
AasI	GACNNNNNNGTC	1 cut(s)	305
AatII	GACGTC	1 cut(s)	78
Acc36I	ACCTGC	1 cut(s)	751
AccBSI	CCGCTC	1 cut(s)	354
AccI	GTMKAC	1 cut(s)	312
AclWI	GGATC	1 cut(s)	462
AcoI	YGGCCR	1 cut(s)	256
AcsI	RAATTY	2 cut(s)	249, 532
AcyI	GRCGYC	2 cut(s)	75, 315
AfaI	GTAC	2 cut(s)	269, 619
AfiI	CCNNNNNNNGG	1 cut(s)	490
AflIII	ACRYGT	1 cut(s)	645
AgsI	TTSAA	3 cut(s)	234, 538, 586
AjiI	CACGTC	1 cut(s)	288
AjnI	CCWGG	3 cut(s)	270, 302, 526
AluBI	AGCT	3 cut(s)	106, 570, 748
AluI	AGCT	3 cut(s)	106, 570, 748
Alw26I	GTCTC	1 cut(s)	511
AlwI	GGATC	1 cut(s)	462
AoxI	GGCC	5 cut(s)	9, 256, 260, 282, 393
ApeKI	GCWGC	1 cut(s)	757
ApoI	RAATTY	2 cut(s)	249, 532
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	1 cut(s)	298
AsuC2I	CCSGG	1 cut(s)	737
AsuHPI	GGTGA	3 cut(s)	511, 775, 814
AvaII	GGWCC	1 cut(s)	298
BanII	GRGCYC	2 cut(s)	639, 788
BbvI	GCAGC	1 cut(s)	769
BccI	CCATC	3 cut(s)	218, 571, 793
BceAI	ACGGC	1 cut(s)	182
BciT130I	CCWGG	3 cut(s)	272, 304, 528
BcnI	CCSGG	1 cut(s)	737
BcoDI	GTCTC	1 cut(s)	511
BfuAI	ACCTGC	1 cut(s)	751
BglI	GCCNNNNNGGC	1 cut(s)	17
BisI	GCNGC	5 cut(s)	127, 192, 195, 393, 758
BlsI	GCNGC	5 cut(s)	128, 193, 196, 394, 759
Bme1390I	CCNGG	4 cut(s)	272, 304, 528, 737
Bme18I	GGWCC	1 cut(s)	298
BmgBI	CACGTC	1 cut(s)	288
BmgT120I	GGNCC	1 cut(s)	298
BmiI	GGNNCC	2 cut(s)	300, 636
BmrFI	CCNGG	4 cut(s)	272, 304, 528, 737
BmsI	GCATC	1 cut(s)	107
BpuMI	CCSGG	1 cut(s)	737
BsaAI	YACGTR	1 cut(s)	646
BsaBI	GATNNNNATC	1 cut(s)	818
BsaHI	GRCGYC	2 cut(s)	75, 315
BsaJI	CCNNGG	3 cut(s)	302, 303, 526
BsaXI	ACNNNNNCTCC	4 cut(s)	557, 587, 601, 631
Bsc4I	CCNNNNNNNGG	1 cut(s)	490
Bse118I	RCCGGY	2 cut(s)	258, 292
Bse1I	ACTGG	1 cut(s)	621
Bse8I	GATNNNNATC	1 cut(s)	818
BseBI	CCWGG	3 cut(s)	272, 304, 528
BseDI	CCNNGG	3 cut(s)	302, 303, 526
BseGI	GGATG	1 cut(s)	673
BseJI	GATNNNNATC	1 cut(s)	818
BseLI	CCNNNNNNNGG	1 cut(s)	490
BseNI	ACTGG	1 cut(s)	621
BseRI	GAGGAG	3 cut(s)	527, 737, 740
BseXI	GCAGC	1 cut(s)	769
BsgI	GTGCAG	1 cut(s)	776
BshFI	GGCC	5 cut(s)	11, 258, 262, 284, 395
BsiSI	CCGG	3 cut(s)	259, 293, 736
BslI	CCNNNNNNNGG	1 cut(s)	490
BsmAI	GTCTC	1 cut(s)	511
BsmBI	CGTCTC	1 cut(s)	511
BsnI	GGCC	5 cut(s)	11, 258, 262, 284, 395
Bsp1286I	GDGCHC	2 cut(s)	639, 788
Bsp143I	GATC	1 cut(s)	454
BspANI	GGCC	5 cut(s)	11, 258, 262, 284, 395
BspLI	GGNNCC	2 cut(s)	300, 636
BspMI	ACCTGC	1 cut(s)	751
BspPI	GGATC	1 cut(s)	462
BsrBI	CCGCTC	1 cut(s)	354
BsrFI	RCCGGY	2 cut(s)	258, 292
BsrI	ACTGG	1 cut(s)	621
BssAI	RCCGGY	2 cut(s)	258, 292
BssECI	CCNNGG	3 cut(s)	302, 303, 526
BssMI	GATC	1 cut(s)	454
BssNI	GRCGYC	2 cut(s)	75, 315
Bst2UI	CCWGG	3 cut(s)	272, 304, 528
Bst4CI	ACNGT	2 cut(s)	361, 754
Bst6I	CTCTTC	1 cut(s)	428
BstACI	GRCGYC	2 cut(s)	75, 315
BstBAI	YACGTR	1 cut(s)	646
BstC8I	GCNNGC	4 cut(s)	260, 282, 397, 788
BstF5I	GGATG	1 cut(s)	673
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	1 cut(s)	457
BstMAI	GTCTC	1 cut(s)	511
BstMBI	GATC	1 cut(s)	454
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 158, 200, 754
BstNI	CCWGG	3 cut(s)	272, 304, 528
BstNSI	RCATGY	1 cut(s)	280
BstSCI	CCNGG	4 cut(s)	270, 302, 526, 735
BstV1I	GCAGC	1 cut(s)	769
BsuRI	GGCC	5 cut(s)	11, 258, 262, 284, 395
BtrI	CACGTC	1 cut(s)	288
BtsCI	GGATG	1 cut(s)	673
BtsIMutI	CAGTG	2 cut(s)	628, 839
BveI	ACCTGC	1 cut(s)	751
Cac8I	GCNNGC	4 cut(s)	260, 282, 397, 788
CfoI	GCGC	1 cut(s)	40
Cfr10I	RCCGGY	2 cut(s)	258, 292
Cfr13I	GGNCC	1 cut(s)	298
CseI	GACGC	2 cut(s)	74, 323
Csp6I	GTAC	2 cut(s)	268, 618
CviAII	CATG	3 cut(s)	277, 319, 676
CviQI	GTAC	2 cut(s)	268, 618
DpnI	GATC	1 cut(s)	456
DpnII	GATC	1 cut(s)	454
DrdI	GACNNNNNNGTC	1 cut(s)	305
DseDI	GACNNNNNNGTC	1 cut(s)	305
EaeI	YGGCCR	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	428
EarI	CTCTTC	1 cut(s)	428
EciI	GGCGGA	2 cut(s)	68, 113
Eco24I	GRGCYC	2 cut(s)	639, 788
Eco32I	GATATC	1 cut(s)	820
Eco47I	GGWCC	1 cut(s)	298
EcoRII	CCWGG	3 cut(s)	270, 302, 526
EcoRV	GATATC	1 cut(s)	820
EcoT38I	GRGCYC	2 cut(s)	639, 788
Esp3I	CGTCTC	1 cut(s)	511
FaeI	CATG	3 cut(s)	280, 322, 679
FaiI	YATR	9 cut(s)	278, 320, 426, 491, 555, 643, 677, 684, 795
FatI	CATG	3 cut(s)	276, 318, 675
FauI	CCCGC	2 cut(s)	157, 795
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	5 cut(s)	127, 192, 195, 393, 758
FokI	GGATG	1 cut(s)	680
FriOI	GRGCYC	2 cut(s)	639, 788
FseI	GGCCGGCC	1 cut(s)	262
Fsp4HI	GCNGC	5 cut(s)	127, 192, 195, 393, 758
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	5 cut(s)	127, 192, 195, 393, 758
HaeIII	GGCC	5 cut(s)	11, 258, 262, 284, 395
HapII	CCGG	3 cut(s)	259, 293, 736
HgaI	GACGC	2 cut(s)	74, 323
HhaI	GCGC	1 cut(s)	40
Hin1I	GRCGYC	2 cut(s)	75, 315
Hin1II	CATG	3 cut(s)	280, 322, 679
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HinfI	GANTC	4 cut(s)	346, 367, 471, 538
HpaII	CCGG	3 cut(s)	259, 293, 736
HphI	GGTGA	3 cut(s)	511, 775, 814
Hpy166II	GTNNAC	4 cut(s)	298, 313, 332, 714
Hpy188I	TCNGA	3 cut(s)	166, 351, 366
Hpy188III	TCNNGA	2 cut(s)	475, 823
Hpy8I	GTNNAC	4 cut(s)	298, 313, 332, 714
Hpy99I	CGWCG	7 cut(s)	68, 77, 203, 218, 292, 314, 317
HpyAV	CCTTC	6 cut(s)	51, 232, 406, 554, 580, 803
HpyCH4III	ACNGT	2 cut(s)	361, 754
HpyCH4IV	ACGT	4 cut(s)	75, 287, 520, 645
HpyCH4V	TGCA	3 cut(s)	280, 451, 757
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 158, 200, 754
HpySE526I	ACGT	4 cut(s)	75, 287, 520, 645
Hsp92I	GRCGYC	2 cut(s)	75, 315
Hsp92II	CATG	3 cut(s)	280, 322, 679
HspAI	GCGC	1 cut(s)	38
KroI	GCCGGC	1 cut(s)	258
KroNI	GCCGGC	1 cut(s)	260
Kzo9I	GATC	1 cut(s)	454
LmnI	GCTCC	2 cut(s)	351, 634
Lsp1109I	GCAGC	1 cut(s)	769
LweI	GCATC	1 cut(s)	107
MaeII	ACGT	4 cut(s)	75, 287, 520, 645
MaeIII	GTNAC	2 cut(s)	521, 837
MalI	GATC	1 cut(s)	456
MbiI	CCGCTC	1 cut(s)	354
MboI	GATC	1 cut(s)	454
MboII	GAAGA	4 cut(s)	421, 445, 490, 778
MhlI	GDGCHC	2 cut(s)	639, 788
MluCI	AATT	3 cut(s)	249, 402, 532
MlyI	GAGTC	1 cut(s)	361
MmeI	TCCRAC	2 cut(s)	189, 389
MroNI	GCCGGC	1 cut(s)	258
MseI	TTAA	3 cut(s)	15, 464, 847
MspA1I	CMGCKG	1 cut(s)	748
MspI	CCGG	3 cut(s)	259, 293, 736
MspR9I	CCNGG	4 cut(s)	272, 304, 528, 737
MvaI	CCWGG	3 cut(s)	272, 304, 528
MwoI	GCNNNNNNNGC	4 cut(s)	17, 158, 200, 754
NaeI	GCCGGC	1 cut(s)	260
NciI	CCSGG	1 cut(s)	737
NdeII	GATC	1 cut(s)	454
NgoMIV	GCCGGC	1 cut(s)	258
NlaIII	CATG	3 cut(s)	280, 322, 679
NlaIV	GGNNCC	2 cut(s)	300, 636
NmuCI	GTSAC	1 cut(s)	837
NspI	RCATGY	1 cut(s)	280
PaqCI	CACCTGC	1 cut(s)	751
PasI	CCCWGGG	1 cut(s)	303
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 72
PdiI	GCCGGC	1 cut(s)	260
PfeI	GAWTC	3 cut(s)	346, 471, 538
PflFI	GACNNNGTC	1 cut(s)	170
PkrI	GCNGC	5 cut(s)	128, 193, 196, 394, 759
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
Ppu21I	YACGTR	1 cut(s)	646
Psp6I	CCWGG	3 cut(s)	270, 302, 526
PspGI	CCWGG	3 cut(s)	270, 302, 526
PspN4I	GGNNCC	2 cut(s)	300, 636
PspPI	GGNCC	1 cut(s)	298
PsyI	GACNNNGTC	1 cut(s)	170
PvuII	CAGCTG	1 cut(s)	748
RigI	GGCCGGCC	1 cut(s)	262
RsaI	GTAC	2 cut(s)	269, 619
RsaNI	GTAC	2 cut(s)	268, 618
SalI	GTCGAC	1 cut(s)	311
SaqAI	TTAA	3 cut(s)	15, 464, 847
SatI	GCNGC	5 cut(s)	127, 192, 195, 393, 758
Sau3AI	GATC	1 cut(s)	454
Sau96I	GGNCC	1 cut(s)	298
SchI	GAGTC	1 cut(s)	361
ScrFI	CCNGG	4 cut(s)	272, 304, 528, 737
SduI	GDGCHC	2 cut(s)	639, 788
SfaNI	GCATC	1 cut(s)	107
SgrAI	CRCCGGYG	1 cut(s)	292
SgrDI	CGTCGACG	1 cut(s)	311
SinI	GGWCC	1 cut(s)	298
Sse9I	AATT	3 cut(s)	249, 402, 532
StyD4I	CCNGG	4 cut(s)	270, 302, 526, 735
TaaI	ACNGT	2 cut(s)	361, 754
TaiI	ACGT	4 cut(s)	78, 290, 523, 648
TaqI	TCGA	4 cut(s)	101, 312, 457, 602
TasI	AATT	3 cut(s)	249, 402, 532
TauI	GCSGC	4 cut(s)	129, 194, 197, 395
TfiI	GAWTC	3 cut(s)	346, 471, 538
Tru1I	TTAA	3 cut(s)	15, 464, 847
Tru9I	TTAA	3 cut(s)	15, 464, 847
TscAI	CASTG	2 cut(s)	628, 839
TseFI	GTSAC	1 cut(s)	837
TseI	GCWGC	1 cut(s)	757
Tsp45I	GTSAC	1 cut(s)	837
TspDTI	ATGAA	3 cut(s)	33, 251, 335
TspGWI	ACGGA	1 cut(s)	734
TspRI	CASTG	2 cut(s)	628, 839
Tth111I	GACNNNGTC	1 cut(s)	170
VpaK11BI	GGWCC	1 cut(s)	298
XapI	RAATTY	2 cut(s)	249, 532
XceI	RCATGY	1 cut(s)	280
XcmI	CCANNNNNNNNNTGG	2 cut(s)	292, 628
XmiI	GTMKAC	1 cut(s)	312
ZraI	GACGTC	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.