FvH4_1g18610

Cysteine desulfurase 1

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
10928495 .. 10929856
1362 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g18610.t1

Sequence Viewer

Length: 1362 bp
ATGGCCTCGAAGCTTCTAGCTTCCTCTCTCCGCAAAACCCTAACCCCAAAACCCTCATCCTCCTTCTTCCGCCCCCTCTCCACCGCCGCAGCCGCTGCCGCTGAGGTCTACGACGACCCCGCCGGAGTCTCCATGAAGGGGGTCAAAATCTCCGGCCGGCCGCTTTACCTCGACATGCAGGCGACGTCTCCGGTGGACCCCAGAGTCGTTGACGCCATGCTCCCTTACTACCTCACCCGCTACGGCAACCCCCACTCCCGGACCCACATGTACGGCTGGGAGTCCGACTCCGCCGTCGAAACCGCCCGCGCCCAAGTCGCCGACTTAATCGGCGCCTCCCCGAAAGAAATCGTCTTCACCTCCGGGGCCACCGAGTGCAACAACATCTCCGTGAAAGGCGTCATGCACTTCTACCGAGACAAGAAGCGCCACGTCATCACCACCCAGACGGAGCACAAGTGCGTCTTGGACTCCTGCCGCCATCTCCAGCAGGAGGGTTTCGAGATCACTTATCTTCCGGTGAAGCCCGATGGGCTTATCGACTTGGATCAGCTCCGGGCCGCGATCCGACCCGATACCGGGTTAGTCTCTGTAATGGCGGTCAACAATGAGATCGGAGTGATACAACCGATGGAGGAAATCGGAGAGATATGCAAGGAGTTCAAGATTCCGTTTCATACCGATGCGGCTCAAGCTTTGGGGAAGATTCCGATTGAGGTTGACAAGTGGAATGTGAGCTTGATGTCGTTGAGTGGGCATAAAGTTTACGGGCCGAAGGGGATTGGTGCATTGTACATGAGGCGCCGGCCGAGGATTCGAGTGGAGCCTCAGATGAATGGAGGGGGGCAGGAGAGGGGGATTCGGAGCGGGACGGTTCCGACTCCATTGGCTGTGGGGATGGGTGCTGCTTGCGAGATTGCGAAGAAGGAGATGGAGTATGATCAGAAGAGGATTAGTTATTTGCAGGAGAGGATGTTGAAGGGGATTAAGGAGCAGCTGGATGAGGTGGTGGTGAATGGGAGTGTTGAGAGGAGGTATCCGGGGAATTTGAACTTGTCGTTTGCGTATGTGGAGGGGGAGAGCTTGTTGATGGGGCTGAAGGAGGTGGCGGTGTCGAGTGGGAGTGCTTGTACTAGTGCGAGTTTGGAGCCATCGTATGTGTTGAGGGCGTTGGGGGTGGATGAGGACATGGCGCATACTTCGATTAGGTTTGGGATTGGGAGGTTTACAACTGAGGAGGAGATTGACAGGGCAGTGAAGCTTACGGTGGAGCAGGTGAAGAAGCTGAGGGAGTTGAGTCCGCTTTATGAGATGGTGAAGGAAGGGATTAATATTAAGGATATTCAGTGGTCGCAGCATTGA

Protein Analysis

454

Amino Acids

50.08

Weight (kDa)

7.15

Isoelectric Point (pI)

45.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_5 PF00266 56 - 417 4.7e-88 Aminotransferase class-V
Beta_elim_lyase PF01212 95 - 230 4.6e-10 Beta-eliminating lyase
DegT_DnrJ_EryC1 PF01041 106 - 234 3.3e-07 DegT/DnrJ/EryC1/StrS aminotransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1264
AasI GACNNNNNNGTC 2 cut(s) 203, 293
AatII GACGTC 1 cut(s) 188
Acc36I ACCTGC 1 cut(s) 1264
AccB1I GGYRCC 2 cut(s) 332, 801
AccBSI CCGCTC 1 cut(s) 867
AccI GTMKAC 1 cut(s) 108
AccII CGCG 2 cut(s) 309, 563
AclWI GGATC 2 cut(s) 555, 559
AcoI YGGCCR 3 cut(s) 154, 158, 806
AcsI RAATTY 1 cut(s) 1045
AcuI CTGAAG 1 cut(s) 1118
AcyI GRCGYC 5 cut(s) 185, 213, 333, 399, 802
AdeI CACNNNGTG 1 cut(s) 375
AfaI GTAC 3 cut(s) 272, 794, 1132
AfiI CCNNNNNNNGG 5 cut(s) 138, 258, 493, 578, 579
AflIII ACRYGT 1 cut(s) 267
AgsI TTSAA 3 cut(s) 664, 979, 1051
AhlI ACTAGT 1 cut(s) 1133
AjiI CACGTC 1 cut(s) 433
AluBI AGCT 9 cut(s) 13, 20, 553, 695, 738, 997, 1083, 1261, 1285
AluI AGCT 9 cut(s) 13, 20, 553, 695, 738, 997, 1083, 1261, 1285
Alw21I GWGCWC 1 cut(s) 456
Alw26I GTCTC 4 cut(s) 133, 192, 411, 592
AlwI GGATC 2 cut(s) 555, 559
AlwNI CAGNNNCTG 1 cut(s) 95
AoxI GGCC 7 cut(s) 3, 154, 158, 366, 558, 770, 806
ApeKI GCWGC 5 cut(s) 89, 95, 905, 994, 1354
ApoI RAATTY 1 cut(s) 1045
AseI ATTAAT 1 cut(s) 1329
AspLEI GCGC 5 cut(s) 311, 335, 429, 804, 1195
AspS9I GGNCC 5 cut(s) 196, 261, 366, 558, 770
AsuC2I CCSGG 5 cut(s) 259, 364, 557, 580, 1041
AsuHPI GGTGA 7 cut(s) 226, 349, 430, 532, 1024, 1288, 1327
AvaII GGWCC 2 cut(s) 196, 261
BanI GGYRCC 2 cut(s) 332, 801
BbsI GAAGAC 1 cut(s) 346
Bbv12I GWGCWC 1 cut(s) 456
BbvCI CCTCAGC 2 cut(s) 102, 1286
BbvI GCAGC 4 cut(s) 82, 101, 892, 1006
BccI CCATC 8 cut(s) 489, 524, 625, 892, 925, 1084, 1159, 1306
BceAI ACGGC 3 cut(s) 259, 278, 289
BciVI GTATCC 1 cut(s) 1047
BclI TGATCA 1 cut(s) 940
BcnI CCSGG 5 cut(s) 259, 364, 557, 580, 1041
BcoDI GTCTC 4 cut(s) 133, 192, 411, 592
BcuI ACTAGT 1 cut(s) 1133
BfaI CTAG 2 cut(s) 17, 1134
BfoI RGCGCY 3 cut(s) 336, 430, 805
BfuAI ACCTGC 1 cut(s) 1264
BfuI GTATCC 1 cut(s) 1047
BglI GCCNNNNNGGC 1 cut(s) 532
Bme1390I CCNGG 5 cut(s) 259, 364, 557, 580, 1041
Bme18I GGWCC 2 cut(s) 196, 261
BmgBI CACGTC 1 cut(s) 433
BmgT120I GGNCC 5 cut(s) 196, 261, 366, 558, 770
BmiI GGNNCC 8 cut(s) 198, 263, 334, 367, 803, 825, 876, 1149
BmrFI CCNGG 5 cut(s) 259, 364, 557, 580, 1041
BmsI GCATC 1 cut(s) 673
BpiI GAAGAC 1 cut(s) 346
BplI GAGNNNNNCTC 2 cut(s) 272, 304
BpmI CTGGAG 1 cut(s) 470
Bpu10I CCTNAGC 2 cut(s) 102, 1286
BpuEI CTTGAG 1 cut(s) 675
BpuMI CCSGG 5 cut(s) 259, 364, 557, 580, 1041
BsaHI GRCGYC 5 cut(s) 185, 213, 333, 399, 802
BsaJI CCNNGG 3 cut(s) 363, 809, 1040
BsaWI WCCGGW 2 cut(s) 190, 517
Bsc4I CCNNNNNNNGG 5 cut(s) 138, 258, 493, 578, 579
Bse118I RCCGGY 2 cut(s) 156, 804
BseDI CCNNGG 3 cut(s) 363, 809, 1040
BseGI GGATG 5 cut(s) 56, 903, 978, 1006, 1186
BseLI CCNNNNNNNGG 5 cut(s) 138, 258, 493, 578, 579
BseMII CTCAG 4 cut(s) 93, 842, 1224, 1277
BseRI GAGGAG 3 cut(s) 1045, 1250, 1253
BseX3I CGGCCG 3 cut(s) 154, 158, 806
BseXI GCAGC 4 cut(s) 82, 101, 892, 1006
BseYI CCCAGC 1 cut(s) 276
Bsh1236I CGCG 2 cut(s) 309, 563
Bsh1285I CGRYCG 3 cut(s) 157, 161, 809
BshFI GGCC 7 cut(s) 5, 156, 160, 368, 560, 772, 808
BshNI GGYRCC 2 cut(s) 332, 801
BsiEI CGRYCG 3 cut(s) 157, 161, 809
BsiHKAI GWGCWC 1 cut(s) 456
BslFI GGGAC 1 cut(s) 883
BslI CCNNNNNNNGG 5 cut(s) 138, 258, 493, 578, 579
BsmAI GTCTC 4 cut(s) 133, 192, 411, 592
BsmBI CGTCTC 1 cut(s) 192
BsmFI GGGAC 1 cut(s) 883
BsnI GGCC 7 cut(s) 5, 156, 160, 368, 560, 772, 808
Bsp1286I GDGCHC 1 cut(s) 456
Bsp1407I TGTACA 1 cut(s) 792
Bsp143I GATC 5 cut(s) 504, 547, 564, 612, 940
BspANI GGCC 7 cut(s) 5, 156, 160, 368, 560, 772, 808
BspCNI CTCAG 4 cut(s) 94, 841, 1225, 1278
BspFNI CGCG 2 cut(s) 309, 563
BspLI GGNNCC 8 cut(s) 198, 263, 334, 367, 803, 825, 876, 1149
BspMI ACCTGC 1 cut(s) 1264
BspPI GGATC 2 cut(s) 555, 559
BspT107I GGYRCC 2 cut(s) 332, 801
BsrBI CCGCTC 1 cut(s) 867
BsrFI RCCGGY 2 cut(s) 156, 804
BsrGI TGTACA 1 cut(s) 792
BssAI RCCGGY 2 cut(s) 156, 804
BssECI CCNNGG 3 cut(s) 363, 809, 1040
BssMI GATC 5 cut(s) 504, 547, 564, 612, 940
BssNI GRCGYC 5 cut(s) 185, 213, 333, 399, 802
Bst4CI ACNGT 2 cut(s) 874, 1267
Bst6I CTCTTC 1 cut(s) 941
BstACI GRCGYC 5 cut(s) 185, 213, 333, 399, 802
BstAPI GCANNNNNTGC 1 cut(s) 95
BstAUI TGTACA 1 cut(s) 792
BstC8I GCNNGC 5 cut(s) 158, 180, 307, 806, 910
BstDEI CTNAG 4 cut(s) 102, 828, 1233, 1286
BstF5I GGATG 5 cut(s) 56, 903, 978, 1006, 1186
BstFNI CGCG 2 cut(s) 309, 563
BstH2I RGCGCY 3 cut(s) 336, 430, 805
BstHHI GCGC 5 cut(s) 311, 335, 429, 804, 1195
BstKTI GATC 5 cut(s) 507, 550, 567, 615, 943
BstMAI GTCTC 4 cut(s) 133, 192, 411, 592
BstMBI GATC 5 cut(s) 504, 547, 564, 612, 940
BstMCI CGRYCG 3 cut(s) 157, 161, 809
BstMWI GCNNNNNNNGC 6 cut(s) 92, 95, 98, 317, 532, 692
BstNSI RCATGY 2 cut(s) 178, 271
BstSCI CCNGG 5 cut(s) 257, 362, 555, 578, 1039
BstUI CGCG 2 cut(s) 309, 563
BstV1I GCAGC 4 cut(s) 82, 101, 892, 1006
BstV2I GAAGAC 1 cut(s) 346
BstZI CGGCCG 3 cut(s) 154, 158, 806
BsuI GTATCC 1 cut(s) 1047
BsuRI GGCC 7 cut(s) 5, 156, 160, 368, 560, 772, 808
BtrI CACGTC 1 cut(s) 433
BtsCI GGATG 5 cut(s) 56, 903, 978, 1006, 1186
BtsI GCAGTG 1 cut(s) 1260
BtsIMutI CAGTG 2 cut(s) 1260, 1352
BveI ACCTGC 1 cut(s) 1264
Cac8I GCNNGC 5 cut(s) 158, 180, 307, 806, 910
CaiI CAGNNNCTG 1 cut(s) 95
CfoI GCGC 5 cut(s) 311, 335, 429, 804, 1195
Cfr10I RCCGGY 2 cut(s) 156, 804
Cfr13I GGNCC 5 cut(s) 196, 261, 366, 558, 770
CseI GACGC 3 cut(s) 221, 388, 451
Csp6I GTAC 3 cut(s) 271, 793, 1131
CviAII CATG 7 cut(s) 133, 175, 217, 268, 403, 796, 1189
CviQI GTAC 3 cut(s) 271, 793, 1131
DdeI CTNAG 4 cut(s) 102, 828, 1233, 1286
DinI GGCGCC 2 cut(s) 334, 803
DpnI GATC 5 cut(s) 506, 549, 566, 614, 942
DpnII GATC 5 cut(s) 504, 547, 564, 612, 940
DraIII CACNNNGTG 1 cut(s) 375
DrdI GACNNNNNNGTC 2 cut(s) 203, 293
DseDI GACNNNNNNGTC 2 cut(s) 203, 293
EaeI YGGCCR 3 cut(s) 154, 158, 806
EagI CGGCCG 3 cut(s) 154, 158, 806
Eam1104I CTCTTC 1 cut(s) 941
EarI CTCTTC 1 cut(s) 941
EciI GGCGGA 2 cut(s) 59, 280
EclXI CGGCCG 3 cut(s) 154, 158, 806
Eco47I GGWCC 2 cut(s) 196, 261
Eco52I CGGCCG 3 cut(s) 154, 158, 806
Eco57I CTGAAG 1 cut(s) 1118
EgeI GGCGCC 2 cut(s) 334, 803
EheI GGCGCC 2 cut(s) 334, 803
Esp3I CGTCTC 1 cut(s) 192
FaeI CATG 7 cut(s) 136, 178, 220, 271, 406, 799, 1192
FalI AAGNNNNNCTT 2 cut(s) 449, 481
FaqI GGGAC 1 cut(s) 883
FatI CATG 7 cut(s) 132, 174, 216, 267, 402, 795, 1188
FauI CCCGC 4 cut(s) 127, 245, 314, 860
FbaI TGATCA 1 cut(s) 940
FblI GTMKAC 1 cut(s) 108
FokI GGATG 5 cut(s) 43, 910, 985, 1013, 1193
FseI GGCCGGCC 1 cut(s) 160
FspBI CTAG 2 cut(s) 17, 1134
GlaI GCGC 5 cut(s) 310, 334, 428, 803, 1194
GsaI CCCAGC 1 cut(s) 280
GsuI CTGGAG 1 cut(s) 470
HaeII RGCGCY 3 cut(s) 336, 430, 805
HaeIII GGCC 7 cut(s) 5, 156, 160, 368, 560, 772, 808
HgaI GACGC 3 cut(s) 221, 388, 451
HhaI GCGC 5 cut(s) 311, 335, 429, 804, 1195
Hin1I GRCGYC 5 cut(s) 185, 213, 333, 399, 802
Hin1II CATG 7 cut(s) 136, 178, 220, 271, 406, 799, 1192
Hin6I GCGC 5 cut(s) 309, 333, 427, 802, 1193
HinP1I GCGC 5 cut(s) 309, 333, 427, 802, 1193
HincII GTYRAC 3 cut(s) 211, 604, 721
HindII GTYRAC 3 cut(s) 211, 604, 721
HindIII AAGCTT 3 cut(s) 11, 693, 1259
HphI GGTGA 7 cut(s) 226, 349, 430, 532, 1024, 1288, 1327
Hpy166II GTNNAC 7 cut(s) 109, 196, 211, 604, 721, 766, 1227
Hpy188I TCNGA 9 cut(s) 286, 569, 617, 644, 711, 831, 864, 879, 945
Hpy188III TCNNGA 2 cut(s) 502, 664
Hpy8I GTNNAC 7 cut(s) 109, 196, 211, 604, 721, 766, 1227
Hpy99I CGWCG 3 cut(s) 116, 187, 299
HpyAV CCTTC 8 cut(s) 73, 130, 769, 919, 973, 1093, 1312, 1316
HpyCH4III ACNGT 2 cut(s) 874, 1267
HpyCH4IV ACGT 2 cut(s) 185, 432
HpyCH4V TGCA 6 cut(s) 178, 378, 406, 654, 788, 964
HpyF10VI GCNNNNNNNGC 6 cut(s) 92, 95, 98, 317, 532, 692
HpyF3I CTNAG 4 cut(s) 102, 828, 1233, 1286
HpySE526I ACGT 2 cut(s) 185, 432
Hsp92I GRCGYC 5 cut(s) 185, 213, 333, 399, 802
Hsp92II CATG 7 cut(s) 136, 178, 220, 271, 406, 799, 1192
HspAI GCGC 5 cut(s) 309, 333, 427, 802, 1193
KasI GGCGCC 2 cut(s) 332, 801
KroI GCCGGC 2 cut(s) 156, 804
KroNI GCCGGC 2 cut(s) 158, 806
Ksp22I TGATCA 1 cut(s) 940
Kzo9I GATC 5 cut(s) 504, 547, 564, 612, 940
LmnI GCTCC 8 cut(s) 225, 451, 558, 823, 864, 991, 1147, 1270
Lsp1109I GCAGC 4 cut(s) 82, 101, 892, 1006
LweI GCATC 1 cut(s) 673
MaeI CTAG 2 cut(s) 17, 1134
MaeII ACGT 2 cut(s) 185, 432
MalI GATC 5 cut(s) 506, 549, 566, 614, 942
MbiI CCGCTC 1 cut(s) 867
MboI GATC 5 cut(s) 504, 547, 564, 612, 940
MboII GAAGA 7 cut(s) 58, 346, 506, 715, 934, 958, 1291
MhlI GDGCHC 1 cut(s) 456
MluCI AATT 1 cut(s) 1045
Mly113I GGCGCC 2 cut(s) 333, 802
MlyI GAGTC 7 cut(s) 135, 213, 281, 290, 464, 874, 1306
MmeI TCCRAC 3 cut(s) 309, 592, 902
MroNI GCCGGC 2 cut(s) 156, 804
MseI TTAA 4 cut(s) 326, 987, 1329, 1335
MslI CAYNNNNRTG 2 cut(s) 389, 681
MspA1I CMGCKG 3 cut(s) 95, 101, 997
MspR9I CCNGG 5 cut(s) 259, 364, 557, 580, 1041
MvnI CGCG 2 cut(s) 309, 563
MwoI GCNNNNNNNGC 6 cut(s) 92, 95, 98, 317, 532, 692
NaeI GCCGGC 2 cut(s) 158, 806
NarI GGCGCC 2 cut(s) 333, 802
NciI CCSGG 5 cut(s) 259, 364, 557, 580, 1041
NdeII GATC 5 cut(s) 504, 547, 564, 612, 940
NgoMIV GCCGGC 2 cut(s) 156, 804
NlaIII CATG 7 cut(s) 136, 178, 220, 271, 406, 799, 1192
NlaIV GGNNCC 8 cut(s) 198, 263, 334, 367, 803, 825, 876, 1149
NmeAIII GCCGAG 1 cut(s) 834
NspI RCATGY 2 cut(s) 178, 271
PaqCI CACCTGC 1 cut(s) 1264
PciI ACATGT 1 cut(s) 267
PdiI GCCGGC 2 cut(s) 158, 806
PfeI GAWTC 4 cut(s) 667, 706, 814, 859
PfoI TCCNGGA 1 cut(s) 257
PleI GAGTC 7 cut(s) 134, 212, 281, 289, 464, 874, 1305
PluTI GGCGCC 2 cut(s) 336, 805
PpsI GAGTC 7 cut(s) 134, 212, 281, 289, 464, 874, 1305
PscI ACATGT 1 cut(s) 267
PshBI ATTAAT 1 cut(s) 1329
PspFI CCCAGC 1 cut(s) 276
PspN4I GGNNCC 8 cut(s) 198, 263, 334, 367, 803, 825, 876, 1149
PspPI GGNCC 5 cut(s) 196, 261, 366, 558, 770
PstNI CAGNNNCTG 1 cut(s) 95
PvuII CAGCTG 1 cut(s) 997
RigI GGCCGGCC 1 cut(s) 160
RsaI GTAC 3 cut(s) 272, 794, 1132
RsaNI GTAC 3 cut(s) 271, 793, 1131
RseI CAYNNNNRTG 2 cut(s) 389, 681
SaqAI TTAA 4 cut(s) 326, 987, 1329, 1335
Sau3AI GATC 5 cut(s) 504, 547, 564, 612, 940
Sau96I GGNCC 5 cut(s) 196, 261, 366, 558, 770
SchI GAGTC 7 cut(s) 135, 213, 281, 290, 464, 874, 1306
ScrFI CCNGG 5 cut(s) 259, 364, 557, 580, 1041
SduI GDGCHC 1 cut(s) 456
SfaNI GCATC 1 cut(s) 673
SfoI GGCGCC 2 cut(s) 334, 803
SinI GGWCC 2 cut(s) 196, 261
SmiMI CAYNNNNRTG 2 cut(s) 389, 681
SmlI CTYRAG 1 cut(s) 690
SmoI CTYRAG 1 cut(s) 690
SpeI ACTAGT 1 cut(s) 1133
Sse9I AATT 1 cut(s) 1045
SspDI GGCGCC 2 cut(s) 332, 801
SspI AATATT 1 cut(s) 1333
SspMI CTAG 2 cut(s) 17, 1134
StyD4I CCNGG 5 cut(s) 257, 362, 555, 578, 1039
TaaI ACNGT 2 cut(s) 874, 1267
TaiI ACGT 2 cut(s) 188, 435
TaqI TCGA 8 cut(s) 8, 171, 297, 501, 540, 817, 1115, 1202
TasI AATT 1 cut(s) 1045
TatI WGTACW 2 cut(s) 792, 1130
TauI GCSGC 7 cut(s) 89, 95, 101, 163, 480, 563, 689
TfiI GAWTC 4 cut(s) 667, 706, 814, 859
Tru1I TTAA 4 cut(s) 326, 987, 1329, 1335
Tru9I TTAA 4 cut(s) 326, 987, 1329, 1335
TscAI CASTG 2 cut(s) 1260, 1352
TseI GCWGC 5 cut(s) 89, 95, 905, 994, 1354
TspDTI ATGAA 3 cut(s) 149, 665, 848
TspGWI ACGGA 3 cut(s) 379, 464, 660
TspRI CASTG 2 cut(s) 1260, 1352
VpaK11BI GGWCC 2 cut(s) 196, 261
VspI ATTAAT 1 cut(s) 1329
XapI RAATTY 1 cut(s) 1045
XceI RCATGY 2 cut(s) 178, 271
XmiI GTMKAC 1 cut(s) 108
XspI CTAG 2 cut(s) 17, 1134
ZraI GACGTC 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.