Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002608

Physical Location & Seq

Genomic Coordinates Reverse (-)

21426588 .. 21426983

Gene Structure 396 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG221400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGTTCGGATGTCATTGGTTGTAGGGATGGGGACTGCTTGCGAGATTGCAAAGAAGGAGATGGAGTATGATCAGAAAAGGATTAGTCAGCTGCAGGAGAGGATGCTGAGTGGGATTAGGGAGCAGCTGGATGAGGTGGTGGTGAATGGCAGTATTGAGAGGATGTACCCGGGGAATTTGAACTTGTCGTTTGCTTATGTGGAGGGGGAGAGCTTGCTGATGGGGTTGAAGGAGGTGGCGGTGTCGAGTGGGAGTGCTTGCACCAGTGCCAGTTTGGAGCCGTCGTATGTGTTGAGGGCGGATGAGGACATGGCACACACTTCGATTAGGTTTGGGATTGGGAGGTTTACTATCGAGGAGGAGATTGATAGGGAAGTGCAACTTACGGTGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006790 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016043 GO:0016226 GO:0016740 GO:0016782 GO:0016783 GO:0017076 GO:0022607 GO:0030554 GO:0031071 GO:0031163 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0051186 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 ko04122 map00730 map01100 map04122

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

131

Amino Acids

14.6

Weight (kDa)

4.67

Isoelectric Point (pI)

52.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_5	PF00266	6 - 124	7.1e-09	Aminotransferase class-V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65720 AT5G65720 AT5G65720
fragaria_vesca	FvH4_1g18610 FvH4_3g39110 FvH4_4g11530
malus_domestica	MD15G1303800.v1.1
prunus_persica	Prupe.6G213300_v2.0.a1
pyrus_communis	pycom02g15750 pycom02g15760 pycom12g09240 pycom14g03250 pycom15g26680
rosa_chinensis	RchiOBHm_Chr2g0109351 RchiOBHm_Chr2g0109391 RchiOBHm_Chr5g0045361
rosa_laevigata	RLG00000017733
rosa_multiflora	Rmu_sc0000332.1_g000011 Rmu_sc0001940.1_g000003 Rmu_sc0012764.1_g000010
rosa_roxburghii	Rroxscaffold_2G00134280
rosa_rugosa	Rorug02G0159500
rosa_samantha	Rh2AG211300 Rh2AG211600 Rh2BG221300 Rh2BG221400 Rh2BG221500 Rh2BG222000 Rh2CG213300 Rh2CG213900 Rh2DG217100 Rh2DG217400 Rh4BG181900 Rh5AG243200 Rh5BG312000 Rh5DG322600 Rh6CG498200 Rh7BG128000
rosa_wichuraiana	Rw5G028200 Rw5G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	239, 299
AcsI	RAATTY	1 cut(s)	175
AfaI	GTAC	1 cut(s)	167
AgsI	TTSAA	2 cut(s)	181, 229
AluBI	AGCT	3 cut(s)	91, 127, 213
AluI	AGCT	3 cut(s)	91, 127, 213
Ama87I	CYCGRG	1 cut(s)	169
ApeKI	GCWGC	2 cut(s)	91, 124
ApoI	RAATTY	1 cut(s)	175
AsuC2I	CCSGG	2 cut(s)	170, 171
AsuHPI	GGTGA	1 cut(s)	154
AvaI	CYCGRG	1 cut(s)	169
BbvI	GCAGC	2 cut(s)	78, 136
BccI	CCATC	3 cut(s)	22, 55, 214
BceAI	ACGGC	1 cut(s)	265
BcgI	CGANNNNNNTGC	2 cut(s)	303, 337
BclI	TGATCA	1 cut(s)	70
BcnI	CCSGG	2 cut(s)	170, 171
BfmI	CTRYAG	1 cut(s)	92
BisI	GCNGC	2 cut(s)	92, 125
BlsI	GCNGC	2 cut(s)	93, 126
Bme1390I	CCNGG	2 cut(s)	170, 171
BmeT110I	CYCGRG	1 cut(s)	169
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	2 cut(s)	170, 171
BmsI	GCATC	1 cut(s)	93
BpuMI	CCSGG	2 cut(s)	170, 171
BsaJI	CCNNGG	2 cut(s)	169, 170
BsaXI	ACNNNNNCTCC	4 cut(s)	50, 80, 269, 299
Bse1I	ACTGG	2 cut(s)	264, 270
BseDI	CCNNGG	2 cut(s)	169, 170
BseGI	GGATG	6 cut(s)	15, 33, 108, 136, 168, 307
BseMII	CTCAG	1 cut(s)	98
BseNI	ACTGG	2 cut(s)	264, 270
BseRI	GAGGAG	2 cut(s)	371, 374
BseXI	GCAGC	2 cut(s)	78, 136
BsiHKCI	CYCGRG	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	170
BslFI	GGGAC	1 cut(s)	46
BsmFI	GGGAC	1 cut(s)	46
BsoBI	CYCGRG	1 cut(s)	169
Bsp143I	GATC	1 cut(s)	70
BspACI	CCGC	2 cut(s)	239, 299
BspCNI	CTCAG	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	279
BspMAI	CTGCAG	1 cut(s)	96
BsrI	ACTGG	2 cut(s)	264, 270
BssECI	CCNNGG	2 cut(s)	169, 170
BssMI	GATC	1 cut(s)	70
Bst4CI	ACNGT	1 cut(s)	388
BstC8I	GCNNGC	3 cut(s)	40, 215, 259
BstDEI	CTNAG	1 cut(s)	107
BstF5I	GGATG	6 cut(s)	15, 33, 108, 136, 168, 307
BstKTI	GATC	1 cut(s)	73
BstMBI	GATC	1 cut(s)	70
BstSCI	CCNGG	2 cut(s)	168, 169
BstSFI	CTRYAG	1 cut(s)	92
BstV1I	GCAGC	2 cut(s)	78, 136
BtsCI	GGATG	6 cut(s)	15, 33, 108, 136, 168, 307
BtsIMutI	CAGTG	1 cut(s)	271
Cac8I	GCNNGC	3 cut(s)	40, 215, 259
Cfr9I	CCCGGG	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	1 cut(s)	310
CviJI	RGCY	4 cut(s)	91, 127, 213, 280
CviKI_1	RGCY	4 cut(s)	91, 127, 213, 280
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	1 cut(s)	107
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
EciI	GGCGGA	1 cut(s)	314
Eco88I	CYCGRG	1 cut(s)	169
FaeI	CATG	1 cut(s)	313
FaiI	YATR	4 cut(s)	69, 198, 288, 311
FalI	AAGNNNNNCTT	1 cut(s)	366
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	1 cut(s)	309
FbaI	TGATCA	1 cut(s)	70
Fnu4HI	GCNGC	2 cut(s)	92, 125
FokI	GGATG	6 cut(s)	22, 40, 115, 143, 175, 314
Fsp4HI	GCNGC	2 cut(s)	92, 125
GluI	GCNGC	2 cut(s)	92, 125
HapII	CCGG	1 cut(s)	170
Hin1II	CATG	1 cut(s)	313
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	1 cut(s)	348
Hpy188I	TCNGA	2 cut(s)	9, 75
Hpy8I	GTNNAC	1 cut(s)	348
Hpy99I	CGWCG	1 cut(s)	286
HpyAV	CCTTC	2 cut(s)	49, 223
HpyCH4III	ACNGT	1 cut(s)	388
HpyCH4V	TGCA	5 cut(s)	50, 94, 261, 379, 391
HpyF3I	CTNAG	1 cut(s)	107
Hsp92II	CATG	1 cut(s)	313
Ksp22I	TGATCA	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	70
LmnI	GCTCC	2 cut(s)	121, 277
LpnPI	CCDG	5 cut(s)	80, 113, 183, 277, 283
Lsp1109I	GCAGC	2 cut(s)	78, 136
LweI	GCATC	1 cut(s)	93
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MluCI	AATT	1 cut(s)	175
MspA1I	CMGCKG	2 cut(s)	91, 127
MspI	CCGG	1 cut(s)	170
MspR9I	CCNGG	2 cut(s)	170, 171
NciI	CCSGG	2 cut(s)	170, 171
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	1 cut(s)	313
NlaIV	GGNNCC	1 cut(s)	279
PkrI	GCNGC	2 cut(s)	93, 126
PspN4I	GGNNCC	1 cut(s)	279
PstI	CTGCAG	1 cut(s)	96
PvuII	CAGCTG	2 cut(s)	91, 127
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
SatI	GCNGC	2 cut(s)	92, 125
Sau3AI	GATC	1 cut(s)	70
ScrFI	CCNGG	2 cut(s)	170, 171
SetI	ASST	7 cut(s)	93, 129, 138, 215, 237, 332, 347
SfaNI	GCATC	1 cut(s)	93
SfcI	CTRYAG	1 cut(s)	92
SmaI	CCCGGG	1 cut(s)	171
Sse9I	AATT	1 cut(s)	175
SsiI	CCGC	2 cut(s)	239, 299
StyD4I	CCNGG	2 cut(s)	168, 169
TaaI	ACNGT	1 cut(s)	388
TaqI	TCGA	3 cut(s)	245, 323, 354
TasI	AATT	1 cut(s)	175
TscAI	CASTG	1 cut(s)	271
TseI	GCWGC	2 cut(s)	91, 124
TspMI	CCCGGG	1 cut(s)	169
TspRI	CASTG	1 cut(s)	271
XapI	RAATTY	1 cut(s)	175
XcmI	CCANNNNNNNNNTGG	1 cut(s)	271
XmaI	CCCGGG	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.