Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002608

Physical Location & Seq

Genomic Coordinates Reverse (-)

42489249 .. 42490772

Gene Structure 1524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G028200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGAGCTTTGGAAATGCGATTCTCTCTCCACACCCACCAAACCTTCATCACTACCCAGACGGAGCACAAGTGCATCCTCGGCTCCTGCCGCCATCTCTAGCAGAAGGATTTCGACATCACCTACCTTCCGGTGAAGGCCGACAGGCTCATCGACCTGGACCAGCTCCGGGCAGCGATCTGGCCCGATACCGGACTGGTCTCAGTTATGGCAAGGAAATCAGAGATATCTGCAAGGAGTTCAAGGTTCCGTTTCACACTGATGCTGCTCAGGCGTTAGGGAAGATTCTGATTGATGTGGATAGGTGGAATGTGAGCTTGATGTCGTTGAGTGGGCACAAGGTGTATGGGCCTAAGGGAGTTGGGGCATTGTACATGAGGCAACGGCCGAGGATTCGGGTGGAGGCTCAGATGAATGGAGGTGGGCAGGAGAGGGGGATAAGGAGTGGGACGGTTTCGACGCCGTTGGTTGTGGGGATGGGGACTGCTTGCGAGATTGCGAAGAAGGAGATGGAGTATGATCATAATAGGATTAGTCAGTTGCAGGAGAGGATGCTGAGTGGGATTAGGGAGCAGCTGGATGAGGTGGTGGTGAATGGCAGTATCGAGAGAAGGTTTTCTGGAAGAAAACTTTCATTGTTTCTTCGTCCAAAAAAGCTACCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006790 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016043 GO:0016226 GO:0016740 GO:0016782 GO:0016783 GO:0017076 GO:0022607 GO:0030554 GO:0031071 GO:0031163 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0051186 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 ko04122 map00730 map01100 map04122

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

220

Amino Acids

24.44

Weight (kDa)

9.95

Isoelectric Point (pI)

45.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_5	PF00266	71 - 199	3.1e-21	Aminotransferase class-V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65720 AT5G65720 AT5G65720
fragaria_vesca	FvH4_1g18610 FvH4_3g39110 FvH4_4g11530
malus_domestica	MD15G1303800.v1.1
prunus_persica	Prupe.6G213300_v2.0.a1
pyrus_communis	pycom02g15750 pycom02g15760 pycom12g09240 pycom14g03250 pycom15g26680
rosa_chinensis	RchiOBHm_Chr2g0109351 RchiOBHm_Chr2g0109391 RchiOBHm_Chr5g0045361
rosa_laevigata	RLG00000017733
rosa_multiflora	Rmu_sc0000332.1_g000011 Rmu_sc0001940.1_g000003 Rmu_sc0012764.1_g000010
rosa_roxburghii	Rroxscaffold_2G00134280
rosa_rugosa	Rorug02G0159500
rosa_samantha	Rh2AG211300 Rh2AG211600 Rh2BG221300 Rh2BG221400 Rh2BG221500 Rh2BG222000 Rh2CG213300 Rh2CG213900 Rh2DG217100 Rh2DG217400 Rh4BG181900 Rh5AG243200 Rh5BG312000 Rh5DG322600 Rh6CG498200 Rh7BG128000
rosa_wichuraiana	Rw5G028200 Rw5G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	89
AcoI	YGGCCR	1 cut(s)	383
AcyI	GRCGYC	1 cut(s)	458
AdeI	CACNNNGTG	1 cut(s)	340
AfaI	GTAC	1 cut(s)	371
AfiI	CCNNNNNNNGG	2 cut(s)	167, 189
AgsI	TTSAA	1 cut(s)	241
AjnI	CCWGG	1 cut(s)	154
AluBI	AGCT	5 cut(s)	6, 164, 315, 574, 655
AluI	AGCT	5 cut(s)	6, 164, 315, 574, 655
Alw21I	GWGCWC	1 cut(s)	67
Alw26I	GTCTC	1 cut(s)	203
AoxI	GGCC	4 cut(s)	136, 180, 347, 383
ApeKI	GCWGC	3 cut(s)	171, 263, 571
Asp700I	GAANNNNTTC	3 cut(s)	108, 613, 628
AspS9I	GGNCC	3 cut(s)	158, 181, 347
AsuC2I	CCSGG	1 cut(s)	168
AsuHPI	GGTGA	3 cut(s)	110, 143, 601
AvaII	GGWCC	1 cut(s)	158
AxyI	CCTNAGG	1 cut(s)	351
BaeGI	GKGCMC	1 cut(s)	336
Bbv12I	GWGCWC	1 cut(s)	67
BbvI	GCAGC	3 cut(s)	183, 250, 583
BccI	CCATC	3 cut(s)	100, 469, 502
BceAI	ACGGC	2 cut(s)	398, 445
BciT130I	CCWGG	1 cut(s)	156
BclI	TGATCA	1 cut(s)	517
BcnI	CCSGG	1 cut(s)	168
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	1 cut(s)	98
BisI	GCNGC	4 cut(s)	89, 172, 264, 572
BlsI	GCNGC	4 cut(s)	90, 173, 265, 573
Bme1390I	CCNGG	2 cut(s)	156, 168
Bme18I	GGWCC	1 cut(s)	158
BmgT120I	GGNCC	3 cut(s)	158, 181, 347
BmiI	GGNNCC	2 cut(s)	83, 246
BmrFI	CCNGG	2 cut(s)	156, 168
BmsI	GCATC	3 cut(s)	82, 250, 540
Bpu10I	CCTNAGC	1 cut(s)	267
BpuMI	CCSGG	1 cut(s)	168
BsaHI	GRCGYC	1 cut(s)	458
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	2 cut(s)	77, 386
BsaWI	WCCGGW	2 cut(s)	128, 189
BsaXI	ACNNNNNCTCC	4 cut(s)	54, 84, 497, 527
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 189
Bse1I	ACTGG	1 cut(s)	199
Bse21I	CCTNAGG	1 cut(s)	351
BseBI	CCWGG	1 cut(s)	156
BseDI	CCNNGG	2 cut(s)	77, 386
BseGI	GGATG	4 cut(s)	73, 480, 555, 583
BseLI	CCNNNNNNNGG	2 cut(s)	167, 189
BseMII	CTCAG	4 cut(s)	214, 281, 419, 545
BseNI	ACTGG	1 cut(s)	199
BseSI	GKGCMC	1 cut(s)	336
BseX3I	CGGCCG	1 cut(s)	383
BseXI	GCAGC	3 cut(s)	183, 250, 583
Bsh1285I	CGRYCG	1 cut(s)	386
BshFI	GGCC	4 cut(s)	138, 182, 349, 385
BsiEI	CGRYCG	1 cut(s)	386
BsiHKAI	GWGCWC	1 cut(s)	67
BsiSI	CCGG	3 cut(s)	129, 167, 190
BslFI	GGGAC	2 cut(s)	460, 493
BslI	CCNNNNNNNGG	2 cut(s)	167, 189
BsmAI	GTCTC	1 cut(s)	203
BsmFI	GGGAC	2 cut(s)	460, 493
BsnI	GGCC	4 cut(s)	138, 182, 349, 385
Bso31I	GGTCTC	1 cut(s)	203
Bsp1286I	GDGCHC	2 cut(s)	67, 336
Bsp1407I	TGTACA	1 cut(s)	369
Bsp143I	GATC	2 cut(s)	175, 517
BspACI	CCGC	1 cut(s)	89
BspANI	GGCC	4 cut(s)	138, 182, 349, 385
BspCNI	CTCAG	4 cut(s)	213, 280, 418, 546
BspLI	GGNNCC	2 cut(s)	83, 246
BspTNI	GGTCTC	1 cut(s)	203
BsrGI	TGTACA	1 cut(s)	369
BsrI	ACTGG	1 cut(s)	199
BssECI	CCNNGG	2 cut(s)	77, 386
BssMI	GATC	2 cut(s)	175, 517
BssNI	GRCGYC	1 cut(s)	458
Bst2UI	CCWGG	1 cut(s)	156
Bst4CI	ACNGT	2 cut(s)	451, 660
BstACI	GRCGYC	1 cut(s)	458
BstAUI	TGTACA	1 cut(s)	369
BstC8I	GCNNGC	1 cut(s)	487
BstDEI	CTNAG	5 cut(s)	200, 267, 351, 405, 554
BstF5I	GGATG	4 cut(s)	73, 480, 555, 583
BstKTI	GATC	2 cut(s)	178, 520
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	2 cut(s)	175, 517
BstMCI	CGRYCG	1 cut(s)	386
BstMWI	GCNNNNNNNGC	3 cut(s)	79, 88, 269
BstNI	CCWGG	1 cut(s)	156
BstSCI	CCNGG	2 cut(s)	154, 166
BstSLI	GKGCMC	1 cut(s)	336
BstV1I	GCAGC	3 cut(s)	183, 250, 583
BstZI	CGGCCG	1 cut(s)	383
Bsu36I	CCTNAGG	1 cut(s)	351
BsuRI	GGCC	4 cut(s)	138, 182, 349, 385
BtsCI	GGATG	4 cut(s)	73, 480, 555, 583
BtsIMutI	CAGTG	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	487
Cfr13I	GGNCC	3 cut(s)	158, 181, 347
CseI	GACGC	1 cut(s)	466
Csp6I	GTAC	1 cut(s)	370
CviAII	CATG	1 cut(s)	373
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	5 cut(s)	200, 267, 351, 405, 554
DpnI	GATC	2 cut(s)	177, 519
DpnII	GATC	2 cut(s)	175, 517
DraIII	CACNNNGTG	1 cut(s)	340
EaeI	YGGCCR	1 cut(s)	383
EagI	CGGCCG	1 cut(s)	383
EclXI	CGGCCG	1 cut(s)	383
Eco31I	GGTCTC	1 cut(s)	203
Eco32I	GATATC	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	158
Eco52I	CGGCCG	1 cut(s)	383
Eco81I	CCTNAGG	1 cut(s)	351
EcoRII	CCWGG	1 cut(s)	154
EcoRV	GATATC	1 cut(s)	226
FaeI	CATG	1 cut(s)	376
FaiI	YATR	5 cut(s)	207, 345, 374, 516, 522
FaqI	GGGAC	2 cut(s)	460, 493
FatI	CATG	1 cut(s)	372
FbaI	TGATCA	1 cut(s)	517
Fnu4HI	GCNGC	4 cut(s)	89, 172, 264, 572
FokI	GGATG	4 cut(s)	60, 487, 562, 590
Fsp4HI	GCNGC	4 cut(s)	89, 172, 264, 572
FspBI	CTAG	1 cut(s)	98
GluI	GCNGC	4 cut(s)	89, 172, 264, 572
HaeIII	GGCC	4 cut(s)	138, 182, 349, 385
HapII	CCGG	3 cut(s)	129, 167, 190
HgaI	GACGC	1 cut(s)	466
Hin1I	GRCGYC	1 cut(s)	458
Hin1II	CATG	1 cut(s)	376
HinfI	GANTC	3 cut(s)	19, 283, 391
HpaII	CCGG	3 cut(s)	129, 167, 190
HphI	GGTGA	3 cut(s)	110, 143, 601
Hpy188I	TCNGA	3 cut(s)	221, 288, 408
Hpy188III	TCNNGA	2 cut(s)	604, 618
Hpy99I	CGWCG	1 cut(s)	460
HpyAV	CCTTC	6 cut(s)	53, 98, 128, 135, 496, 603
HpyCH4III	ACNGT	2 cut(s)	451, 660
HpyCH4V	TGCA	3 cut(s)	73, 231, 541
HpyF10VI	GCNNNNNNNGC	3 cut(s)	79, 88, 269
HpyF3I	CTNAG	5 cut(s)	200, 267, 351, 405, 554
Hsp92I	GRCGYC	1 cut(s)	458
Hsp92II	CATG	1 cut(s)	376
Ksp22I	TGATCA	1 cut(s)	517
Kzo9I	GATC	2 cut(s)	175, 517
LmnI	GCTCC	4 cut(s)	62, 87, 169, 568
Lsp1109I	GCAGC	3 cut(s)	183, 250, 583
LweI	GCATC	3 cut(s)	82, 250, 540
MaeI	CTAG	1 cut(s)	98
MalI	GATC	2 cut(s)	177, 519
MboI	GATC	2 cut(s)	175, 517
MboII	GAAGA	4 cut(s)	292, 511, 632, 633
MhlI	GDGCHC	2 cut(s)	67, 336
MnlI	CCTC	8 cut(s)	87, 369, 381, 394, 410, 423, 540, 574
MroXI	GAANNNNTTC	3 cut(s)	108, 613, 628
MslI	CAYNNNNRTG	1 cut(s)	258
MspA1I	CMGCKG	1 cut(s)	574
MspI	CCGG	3 cut(s)	129, 167, 190
MspR9I	CCNGG	2 cut(s)	156, 168
MvaI	CCWGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	3 cut(s)	79, 88, 269
NciI	CCSGG	1 cut(s)	168
NdeII	GATC	2 cut(s)	175, 517
NlaIII	CATG	1 cut(s)	376
NlaIV	GGNNCC	2 cut(s)	83, 246
NmeAIII	GCCGAG	2 cut(s)	58, 411
PdmI	GAANNNNTTC	3 cut(s)	108, 613, 628
PfeI	GAWTC	3 cut(s)	19, 283, 391
PkrI	GCNGC	4 cut(s)	90, 173, 265, 573
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PspN4I	GGNNCC	2 cut(s)	83, 246
PspPI	GGNCC	3 cut(s)	158, 181, 347
PvuII	CAGCTG	1 cut(s)	574
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
RseI	CAYNNNNRTG	1 cut(s)	258
SatI	GCNGC	4 cut(s)	89, 172, 264, 572
Sau3AI	GATC	2 cut(s)	175, 517
Sau96I	GGNCC	3 cut(s)	158, 181, 347
ScrFI	CCNGG	2 cut(s)	156, 168
SduI	GDGCHC	2 cut(s)	67, 336
SfaNI	GCATC	3 cut(s)	82, 250, 540
SinI	GGWCC	1 cut(s)	158
SmiMI	CAYNNNNRTG	1 cut(s)	258
SsiI	CCGC	1 cut(s)	89
SspMI	CTAG	1 cut(s)	98
StyD4I	CCNGG	2 cut(s)	154, 166
TaaI	ACNGT	2 cut(s)	451, 660
TaqI	TCGA	4 cut(s)	112, 151, 455, 603
TatI	WGTACW	1 cut(s)	369
TauI	GCSGC	1 cut(s)	91
TfiI	GAWTC	3 cut(s)	19, 283, 391
TscAI	CASTG	1 cut(s)	262
TseI	GCWGC	3 cut(s)	171, 263, 571
TspDTI	ATGAA	3 cut(s)	35, 425, 621
TspGWI	ACGGA	2 cut(s)	75, 237
TspRI	CASTG	1 cut(s)	262
VpaK11BI	GGWCC	1 cut(s)	158
XmnI	GAANNNNTTC	3 cut(s)	108, 613, 628
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.