Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002608

Physical Location & Seq

Genomic Coordinates Reverse (-)

21491325 .. 21499054

Gene Structure 7730 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG211300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGCATTGGGGAAGATTCCGATTGATGTGGATAAATGGGATGTGAGCTTGATGTCATTGAGTGGCCACAAGGTGTATGGGCCTAAGGGAGTTGGAGCATTGTACATGAGGCGGCAGCCGAGGATTCGGGTGGAGCCTCGGATGAATGGAGGTGGCCAGGAGAGGGGGATAAGGAGTGGGACGGTTCCGACGTCGTTTGTGTTGGGGATGGGGATTGCTTGCGAGATTGCGAAGAAGCTTTATGAAACGGTGAAGGAAGGGATCAATATTAAGGATGTTATGGTCACAGCATTGAGCAGTTGTGTGATGAGGGGGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006790 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016043 GO:0016226 GO:0016740 GO:0016782 GO:0016783 GO:0017076 GO:0022607 GO:0030554 GO:0031071 GO:0031163 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0051186 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 ko04122 map00730 map01100 map04122

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

106

Amino Acids

11.5

Weight (kDa)

9.8

Isoelectric Point (pI)

35.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_5	PF00266	2 - 79	1.5e-14	Aminotransferase class-V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65720 AT5G65720 AT5G65720
fragaria_vesca	FvH4_1g18610 FvH4_3g39110 FvH4_4g11530
malus_domestica	MD15G1303800.v1.1
prunus_persica	Prupe.6G213300_v2.0.a1
pyrus_communis	pycom02g15750 pycom02g15760 pycom12g09240 pycom14g03250 pycom15g26680
rosa_chinensis	RchiOBHm_Chr2g0109351 RchiOBHm_Chr2g0109391 RchiOBHm_Chr5g0045361
rosa_laevigata	RLG00000017733
rosa_multiflora	Rmu_sc0000332.1_g000011 Rmu_sc0001940.1_g000003 Rmu_sc0012764.1_g000010
rosa_roxburghii	Rroxscaffold_2G00134280
rosa_rugosa	Rorug02G0159500
rosa_samantha	Rh2AG211300 Rh2AG211600 Rh2BG221300 Rh2BG221400 Rh2BG221500 Rh2BG222000 Rh2CG213300 Rh2CG213900 Rh2DG217100 Rh2DG217400 Rh4BG181900 Rh5AG243200 Rh5BG312000 Rh5DG322600 Rh6CG498200 Rh7BG128000
rosa_wichuraiana	Rw5G028200 Rw5G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	194
AciI	CCGC	1 cut(s)	112
AclWI	GGATC	1 cut(s)	269
AcoI	YGGCCR	2 cut(s)	64, 154
AcyI	GRCGYC	1 cut(s)	191
AdeI	CACNNNGTG	1 cut(s)	73
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	1 cut(s)	163
AjnI	CCWGG	1 cut(s)	156
AluBI	AGCT	2 cut(s)	48, 238
AluI	AGCT	2 cut(s)	48, 238
AlwI	GGATC	1 cut(s)	269
AoxI	GGCC	3 cut(s)	64, 80, 154
ApeKI	GCWGC	1 cut(s)	115
AspS9I	GGNCC	1 cut(s)	80
AsuHPI	GGTGA	1 cut(s)	262
AxyI	CCTNAGG	1 cut(s)	84
BalI	TGGCCA	2 cut(s)	66, 156
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	1 cut(s)	202
BciT130I	CCWGG	1 cut(s)	158
BisI	GCNGC	2 cut(s)	113, 116
BlsI	GCNGC	2 cut(s)	114, 117
Bme1390I	CCNGG	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	80
BmiI	GGNNCC	2 cut(s)	135, 186
BmrFI	CCNGG	1 cut(s)	158
BsaHI	GRCGYC	1 cut(s)	191
BsaJI	CCNNGG	2 cut(s)	119, 137
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse21I	CCTNAGG	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	158
BseDI	CCNNGG	2 cut(s)	119, 137
BseGI	GGATG	4 cut(s)	46, 147, 213, 280
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseXI	GCAGC	1 cut(s)	127
BshFI	GGCC	3 cut(s)	66, 82, 156
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	193
BsnI	GGCC	3 cut(s)	66, 82, 156
Bsp1407I	TGTACA	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	261
BspACI	CCGC	1 cut(s)	112
BspANI	GGCC	3 cut(s)	66, 82, 156
BspLI	GGNNCC	2 cut(s)	135, 186
BspPI	GGATC	1 cut(s)	269
BsrGI	TGTACA	1 cut(s)	102
BssECI	CCNNGG	2 cut(s)	119, 137
BssMI	GATC	1 cut(s)	261
BssNI	GRCGYC	1 cut(s)	191
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	2 cut(s)	184, 250
BstACI	GRCGYC	1 cut(s)	191
BstAUI	TGTACA	1 cut(s)	102
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	1 cut(s)	84
BstF5I	GGATG	4 cut(s)	46, 147, 213, 280
BstKTI	GATC	1 cut(s)	264
BstMBI	GATC	1 cut(s)	261
BstNI	CCWGG	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	156
BstV1I	GCAGC	1 cut(s)	127
Bsu36I	CCTNAGG	1 cut(s)	84
BsuRI	GGCC	3 cut(s)	66, 82, 156
BtsCI	GGATG	4 cut(s)	46, 147, 213, 280
Cac8I	GCNNGC	1 cut(s)	220
Cfr13I	GGNCC	1 cut(s)	80
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	1 cut(s)	106
CviJI	RGCY	7 cut(s)	48, 66, 82, 118, 136, 156, 238
CviKI_1	RGCY	7 cut(s)	48, 66, 82, 118, 136, 156, 238
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	1 cut(s)	263
DpnII	GATC	1 cut(s)	261
DraIII	CACNNNGTG	1 cut(s)	73
EaeI	YGGCCR	2 cut(s)	64, 154
Eco81I	CCTNAGG	1 cut(s)	84
EcoRII	CCWGG	1 cut(s)	156
FaeI	CATG	1 cut(s)	109
FaiI	YATR	4 cut(s)	78, 107, 243, 281
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	1 cut(s)	105
Fnu4HI	GCNGC	2 cut(s)	113, 116
FokI	GGATG	4 cut(s)	53, 154, 220, 287
Fsp4HI	GCNGC	2 cut(s)	113, 116
GluI	GCNGC	2 cut(s)	113, 116
HaeIII	GGCC	3 cut(s)	66, 82, 156
Hin1I	GRCGYC	1 cut(s)	191
Hin1II	CATG	1 cut(s)	109
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	2 cut(s)	16, 124
HphI	GGTGA	1 cut(s)	262
Hpy188I	TCNGA	3 cut(s)	21, 141, 189
Hpy99I	CGWCG	2 cut(s)	193, 196
HpyAV	CCTTC	2 cut(s)	247, 251
HpyCH4III	ACNGT	2 cut(s)	184, 250
HpyCH4IV	ACGT	1 cut(s)	191
HpyF3I	CTNAG	1 cut(s)	84
HpySE526I	ACGT	1 cut(s)	191
Hsp92I	GRCGYC	1 cut(s)	191
Hsp92II	CATG	1 cut(s)	109
Kzo9I	GATC	1 cut(s)	261
LmnI	GCTCC	2 cut(s)	95, 133
LpnPI	CCDG	2 cut(s)	143, 170
Lsp1109I	GCAGC	1 cut(s)	127
MaeII	ACGT	1 cut(s)	191
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	1 cut(s)	263
MboI	GATC	1 cut(s)	261
MboII	GAAGA	2 cut(s)	25, 244
MlsI	TGGCCA	2 cut(s)	66, 156
MluNI	TGGCCA	2 cut(s)	66, 156
MmeI	TCCRAC	2 cut(s)	73, 212
MnlI	CCTC	6 cut(s)	102, 114, 143, 147, 156, 303
Mox20I	TGGCCA	2 cut(s)	66, 156
MscI	TGGCCA	2 cut(s)	66, 156
MseI	TTAA	1 cut(s)	270
Msp20I	TGGCCA	2 cut(s)	66, 156
MspR9I	CCNGG	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	158
NdeII	GATC	1 cut(s)	261
NlaIII	CATG	1 cut(s)	109
NlaIV	GGNNCC	2 cut(s)	135, 186
NmeAIII	GCCGAG	1 cut(s)	144
NmuCI	GTSAC	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	1 cut(s)	188
PfeI	GAWTC	2 cut(s)	16, 124
PkrI	GCNGC	2 cut(s)	114, 117
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	2 cut(s)	135, 186
PspPI	GGNCC	1 cut(s)	80
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	2 cut(s)	113, 116
Sau3AI	GATC	1 cut(s)	261
Sau96I	GGNCC	1 cut(s)	80
ScrFI	CCNGG	1 cut(s)	158
SetI	ASST	5 cut(s)	50, 75, 154, 194, 240
SsiI	CCGC	1 cut(s)	112
SspI	AATATT	1 cut(s)	268
StyD4I	CCNGG	1 cut(s)	156
TaaI	ACNGT	2 cut(s)	184, 250
TaiI	ACGT	1 cut(s)	194
TatI	WGTACW	1 cut(s)	102
TauI	GCSGC	1 cut(s)	115
TfiI	GAWTC	2 cut(s)	16, 124
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	2 cut(s)	158, 258
XcmI	CCANNNNNNNNNTGG	1 cut(s)	74
ZraI	GACGTC	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.