Rh2CG213300

Cysteine desulfurase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0002608
Physical Location & Seq
Reverse (-)
20972224 .. 20972478
255 bp
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UTR
Exon/CDS
Intron
Rh2CG213300.1

Sequence Viewer

Length: 255 bp
ATGTCGTTGAGTGGCCACAAGGTGTATGGGCCTAAGGGAGTTGGAGCATTGTACATGAGGCGGCAGCCGAGGATTCGGGTGGAGCCTCGGATGAATGGAGGTGGCCAGGAGAGGGGGATAAGGAGCGGGACGGTTCCGACGTCGTTTGTGTTGGGGATGGGGACTGCTTGCGAGATTGCGAAGAAGCTTTATGAAACGGTGAAGGAAGGGATCAATATTAAGGATAATGTGGTCACAGCATTGAGCAGTGTGTGA

Protein Analysis

84

Amino Acids

9.05

Weight (kDa)

10.09

Isoelectric Point (pI)

44.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_5 PF00266 2 - 63 6.3e-10 Aminotransferase class-V
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 143
AccBSI CCGCTC 1 cut(s) 126
AciI CCGC 2 cut(s) 61, 126
AclWI GGATC 1 cut(s) 218
AcoI YGGCCR 2 cut(s) 13, 103
AcyI GRCGYC 1 cut(s) 140
AdeI CACNNNGTG 1 cut(s) 22
AfaI GTAC 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 112
AjnI CCWGG 1 cut(s) 105
AluBI AGCT 1 cut(s) 187
AluI AGCT 1 cut(s) 187
AlwI GGATC 1 cut(s) 218
AoxI GGCC 3 cut(s) 13, 29, 103
ApeKI GCWGC 1 cut(s) 64
AspS9I GGNCC 1 cut(s) 29
AsuHPI GGTGA 1 cut(s) 211
AxyI CCTNAGG 1 cut(s) 33
BalI TGGCCA 2 cut(s) 15, 105
BbvI GCAGC 1 cut(s) 76
BccI CCATC 1 cut(s) 151
BciT130I CCWGG 1 cut(s) 107
BisI GCNGC 2 cut(s) 62, 65
BlsI GCNGC 2 cut(s) 63, 66
Bme1390I CCNGG 1 cut(s) 107
BmgT120I GGNCC 1 cut(s) 29
BmiI GGNNCC 2 cut(s) 84, 135
BmrFI CCNGG 1 cut(s) 107
BsaHI GRCGYC 1 cut(s) 140
BsaJI CCNNGG 2 cut(s) 68, 86
Bsc4I CCNNNNNNNGG 1 cut(s) 112
Bse21I CCTNAGG 1 cut(s) 33
BseBI CCWGG 1 cut(s) 107
BseDI CCNNGG 2 cut(s) 68, 86
BseGI GGATG 2 cut(s) 96, 162
BseLI CCNNNNNNNGG 1 cut(s) 112
BseXI GCAGC 1 cut(s) 76
BshFI GGCC 3 cut(s) 15, 31, 105
BslFI GGGAC 2 cut(s) 142, 175
BslI CCNNNNNNNGG 1 cut(s) 112
BsmFI GGGAC 2 cut(s) 142, 175
BsnI GGCC 3 cut(s) 15, 31, 105
Bsp1407I TGTACA 1 cut(s) 51
Bsp143I GATC 1 cut(s) 210
BspACI CCGC 2 cut(s) 61, 126
BspANI GGCC 3 cut(s) 15, 31, 105
BspLI GGNNCC 2 cut(s) 84, 135
BspPI GGATC 1 cut(s) 218
BsrBI CCGCTC 1 cut(s) 126
BsrGI TGTACA 1 cut(s) 51
BssECI CCNNGG 2 cut(s) 68, 86
BssMI GATC 1 cut(s) 210
BssNI GRCGYC 1 cut(s) 140
Bst2UI CCWGG 1 cut(s) 107
Bst4CI ACNGT 2 cut(s) 133, 199
BstACI GRCGYC 1 cut(s) 140
BstAUI TGTACA 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 169
BstDEI CTNAG 1 cut(s) 33
BstF5I GGATG 2 cut(s) 96, 162
BstKTI GATC 1 cut(s) 213
BstMBI GATC 1 cut(s) 210
BstNI CCWGG 1 cut(s) 107
BstSCI CCNGG 1 cut(s) 105
BstV1I GCAGC 1 cut(s) 76
Bsu36I CCTNAGG 1 cut(s) 33
BsuRI GGCC 3 cut(s) 15, 31, 105
BtsCI GGATG 2 cut(s) 96, 162
BtsI GCAGTG 1 cut(s) 253
BtsIMutI CAGTG 1 cut(s) 253
Cac8I GCNNGC 1 cut(s) 169
Cfr13I GGNCC 1 cut(s) 29
Csp6I GTAC 1 cut(s) 52
CviAII CATG 1 cut(s) 55
CviJI RGCY 6 cut(s) 15, 31, 67, 85, 105, 187
CviKI_1 RGCY 6 cut(s) 15, 31, 67, 85, 105, 187
CviQI GTAC 1 cut(s) 52
DdeI CTNAG 1 cut(s) 33
DpnI GATC 1 cut(s) 212
DpnII GATC 1 cut(s) 210
DraIII CACNNNGTG 1 cut(s) 22
EaeI YGGCCR 2 cut(s) 13, 103
Eco81I CCTNAGG 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 105
FaeI CATG 1 cut(s) 58
FaiI YATR 3 cut(s) 27, 56, 192
FaqI GGGAC 2 cut(s) 142, 175
FatI CATG 1 cut(s) 54
FauI CCCGC 1 cut(s) 119
Fnu4HI GCNGC 2 cut(s) 62, 65
FokI GGATG 2 cut(s) 103, 169
Fsp4HI GCNGC 2 cut(s) 62, 65
GluI GCNGC 2 cut(s) 62, 65
HaeIII GGCC 3 cut(s) 15, 31, 105
Hin1I GRCGYC 1 cut(s) 140
Hin1II CATG 1 cut(s) 58
HindIII AAGCTT 1 cut(s) 185
HinfI GANTC 1 cut(s) 73
HphI GGTGA 1 cut(s) 211
Hpy188I TCNGA 2 cut(s) 90, 138
Hpy99I CGWCG 2 cut(s) 142, 145
HpyAV CCTTC 2 cut(s) 196, 200
HpyCH4III ACNGT 2 cut(s) 133, 199
HpyCH4IV ACGT 1 cut(s) 140
HpyF3I CTNAG 1 cut(s) 33
HpySE526I ACGT 1 cut(s) 140
Hsp92I GRCGYC 1 cut(s) 140
Hsp92II CATG 1 cut(s) 58
Kzo9I GATC 1 cut(s) 210
LmnI GCTCC 3 cut(s) 44, 82, 123
LpnPI CCDG 2 cut(s) 92, 119
Lsp1109I GCAGC 1 cut(s) 76
MaeII ACGT 1 cut(s) 140
MaeIII GTNAC 1 cut(s) 232
MalI GATC 1 cut(s) 212
MbiI CCGCTC 1 cut(s) 126
MboI GATC 1 cut(s) 210
MboII GAAGA 1 cut(s) 193
MlsI TGGCCA 2 cut(s) 15, 105
MluNI TGGCCA 2 cut(s) 15, 105
MmeI TCCRAC 2 cut(s) 22, 161
MnlI CCTC 5 cut(s) 51, 63, 92, 96, 105
Mox20I TGGCCA 2 cut(s) 15, 105
MscI TGGCCA 2 cut(s) 15, 105
MseI TTAA 1 cut(s) 219
Msp20I TGGCCA 2 cut(s) 15, 105
MspR9I CCNGG 1 cut(s) 107
MvaI CCWGG 1 cut(s) 107
NdeII GATC 1 cut(s) 210
NlaIII CATG 1 cut(s) 58
NlaIV GGNNCC 2 cut(s) 84, 135
NmeAIII GCCGAG 1 cut(s) 93
NmuCI GTSAC 1 cut(s) 232
PcsI WCGNNNNNNNCGW 1 cut(s) 137
PfeI GAWTC 1 cut(s) 73
PkrI GCNGC 2 cut(s) 63, 66
Psp6I CCWGG 1 cut(s) 105
PspGI CCWGG 1 cut(s) 105
PspN4I GGNNCC 2 cut(s) 84, 135
PspPI GGNCC 1 cut(s) 29
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 2 cut(s) 62, 65
Sau3AI GATC 1 cut(s) 210
Sau96I GGNCC 1 cut(s) 29
ScrFI CCNGG 1 cut(s) 107
SetI ASST 4 cut(s) 24, 103, 143, 189
SsiI CCGC 2 cut(s) 61, 126
SspI AATATT 1 cut(s) 217
StyD4I CCNGG 1 cut(s) 105
TaaI ACNGT 2 cut(s) 133, 199
TaiI ACGT 1 cut(s) 143
TatI WGTACW 1 cut(s) 51
TauI GCSGC 1 cut(s) 64
TfiI GAWTC 1 cut(s) 73
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 1 cut(s) 253
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 1 cut(s) 64
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 2 cut(s) 107, 207
TspRI CASTG 1 cut(s) 253
XcmI CCANNNNNNNNNTGG 1 cut(s) 23
ZraI GACGTC 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.