Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002608

Physical Location & Seq

Genomic Coordinates Forward (+)

66284571 .. 66287790

Gene Structure 3220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG498200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCAGTGAACAATGAAATCGGTGTGATTCAACCTATGGAGGAAATCAGAGATATCTGCAAGGAGTTCAAGATTCCGTTTCACACTGATGCTGCTCAGGCGTTAGGGAAGATTCTGATTGATGTGGATAGGTGGAATGTGAGCTTGATGTTGTTGAGTGAGCACAAGGTGTATGGGCCTAAGGGAGTTGGGGCATTGTACATGAGGCGGCGGCCGAGGATTCGGGTGGAGCCTCAGATGAATGGAGGTGGGCAGGAGAGGGGGATAAGGAGCGGGACGATTCCGACACCGTTGGTTGTGGGGATGGGGACTGCTTGCGAGATTGCGAAGAAGGAGATGGAGTATGATCAGAAGAGGATTAGTCAGCTGCATGAGAGGATGCTGAGTGGGATTAGGGAGCAGCTGGATGAGGTGGTGGTGAATGGCAGTATCGAGAGAAGATTTGTTAGACTAGCTAGGCTAGCTGATCTAGCTGAAAGCATCATCTCTTCAAAGTGTGAAACAGGTCTGTATCTGATCCGTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006790 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016043 GO:0016226 GO:0016740 GO:0016782 GO:0016783 GO:0017076 GO:0022607 GO:0030554 GO:0031071 GO:0031163 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0051186 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 ko04122 map00730 map01100 map04122

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

175

Amino Acids

19.77

Weight (kDa)

8.82

Isoelectric Point (pI)

44.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_5	PF00266	1 - 142	3.3e-28	Aminotransferase class-V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65720 AT5G65720 AT5G65720
fragaria_vesca	FvH4_1g18610 FvH4_3g39110 FvH4_4g11530
malus_domestica	MD15G1303800.v1.1
prunus_persica	Prupe.6G213300_v2.0.a1
pyrus_communis	pycom02g15750 pycom02g15760 pycom12g09240 pycom14g03250 pycom15g26680
rosa_chinensis	RchiOBHm_Chr2g0109351 RchiOBHm_Chr2g0109391 RchiOBHm_Chr5g0045361
rosa_laevigata	RLG00000017733
rosa_multiflora	Rmu_sc0000332.1_g000011 Rmu_sc0001940.1_g000003 Rmu_sc0012764.1_g000010
rosa_roxburghii	Rroxscaffold_2G00134280
rosa_rugosa	Rorug02G0159500
rosa_samantha	Rh2AG211300 Rh2AG211600 Rh2BG221300 Rh2BG221400 Rh2BG221500 Rh2BG222000 Rh2CG213300 Rh2CG213900 Rh2DG217100 Rh2DG217400 Rh4BG181900 Rh5AG243200 Rh5BG312000 Rh5DG322600 Rh6CG498200 Rh7BG128000
rosa_wichuraiana	Rw5G028200 Rw5G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	273
AciI	CCGC	3 cut(s)	208, 211, 273
AclWI	GGATC	1 cut(s)	511
AcoI	YGGCCR	1 cut(s)	212
AdeI	CACNNNGTG	1 cut(s)	169
AfaI	GTAC	1 cut(s)	200
AgsI	TTSAA	3 cut(s)	32, 70, 492
AluBI	AGCT	6 cut(s)	144, 367, 403, 455, 464, 473
AluI	AGCT	6 cut(s)	144, 367, 403, 455, 464, 473
Alw21I	GWGCWC	1 cut(s)	165
AlwI	GGATC	1 cut(s)	511
AoxI	GGCC	2 cut(s)	176, 212
ApeKI	GCWGC	3 cut(s)	92, 367, 400
AspS9I	GGNCC	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	430
AsuNHI	GCTAGC	1 cut(s)	460
AxyI	CCTNAGG	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	165
BbvI	GCAGC	3 cut(s)	79, 354, 412
BccI	CCATC	2 cut(s)	298, 331
BclI	TGATCA	1 cut(s)	346
BfaI	CTAG	5 cut(s)	452, 456, 461, 470, 526
BisI	GCNGC	5 cut(s)	93, 209, 212, 368, 401
BlsI	GCNGC	5 cut(s)	94, 210, 213, 369, 402
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	231
BmsI	GCATC	3 cut(s)	79, 369, 489
BmtI	GCTAGC	1 cut(s)	464
Bpu10I	CCTNAGC	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	215
BsaXI	ACNNNNNCTCC	2 cut(s)	326, 356
Bse21I	CCTNAGG	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	215
BseGI	GGATG	3 cut(s)	309, 384, 412
BseMII	CTCAG	3 cut(s)	110, 248, 374
BseX3I	CGGCCG	1 cut(s)	212
BseXI	GCAGC	3 cut(s)	79, 354, 412
Bsh1285I	CGRYCG	1 cut(s)	215
BshFI	GGCC	2 cut(s)	178, 214
BsiEI	CGRYCG	1 cut(s)	215
BsiHKAI	GWGCWC	1 cut(s)	165
BslFI	GGGAC	2 cut(s)	289, 322
BsmFI	GGGAC	2 cut(s)	289, 322
BsnI	GGCC	2 cut(s)	178, 214
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp1407I	TGTACA	1 cut(s)	198
Bsp143I	GATC	3 cut(s)	346, 466, 516
BspACI	CCGC	3 cut(s)	208, 211, 273
BspANI	GGCC	2 cut(s)	178, 214
BspCNI	CTCAG	3 cut(s)	109, 247, 375
BspLI	GGNNCC	1 cut(s)	231
BspOI	GCTAGC	1 cut(s)	464
BspPI	GGATC	1 cut(s)	511
BsrBI	CCGCTC	1 cut(s)	273
BsrGI	TGTACA	1 cut(s)	198
BssECI	CCNNGG	1 cut(s)	215
BssMI	GATC	3 cut(s)	346, 466, 516
Bst4CI	ACNGT	1 cut(s)	291
Bst6I	CTCTTC	2 cut(s)	347, 493
BstAUI	TGTACA	1 cut(s)	198
BstC8I	GCNNGC	2 cut(s)	316, 462
BstDEI	CTNAG	4 cut(s)	96, 180, 234, 383
BstF5I	GGATG	3 cut(s)	309, 384, 412
BstKTI	GATC	3 cut(s)	349, 469, 519
BstMBI	GATC	3 cut(s)	346, 466, 516
BstMCI	CGRYCG	1 cut(s)	215
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 461, 470
BstV1I	GCAGC	3 cut(s)	79, 354, 412
BstZI	CGGCCG	1 cut(s)	212
Bsu36I	CCTNAGG	1 cut(s)	180
BsuRI	GGCC	2 cut(s)	178, 214
BtsCI	GGATG	3 cut(s)	309, 384, 412
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	12, 84
Cac8I	GCNNGC	2 cut(s)	316, 462
Cfr13I	GGNCC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	2 cut(s)	202, 371
CviQI	GTAC	1 cut(s)	199
DdeI	CTNAG	4 cut(s)	96, 180, 234, 383
DpnI	GATC	3 cut(s)	348, 468, 518
DpnII	GATC	3 cut(s)	346, 466, 516
DraIII	CACNNNGTG	1 cut(s)	169
EaeI	YGGCCR	1 cut(s)	212
EagI	CGGCCG	1 cut(s)	212
Eam1104I	CTCTTC	2 cut(s)	347, 493
EarI	CTCTTC	2 cut(s)	347, 493
EclXI	CGGCCG	1 cut(s)	212
Eco32I	GATATC	1 cut(s)	55
Eco52I	CGGCCG	1 cut(s)	212
Eco81I	CCTNAGG	1 cut(s)	180
EcoRV	GATATC	1 cut(s)	55
FaeI	CATG	2 cut(s)	205, 374
FaiI	YATR	5 cut(s)	38, 174, 203, 345, 372
FaqI	GGGAC	2 cut(s)	289, 322
FatI	CATG	2 cut(s)	201, 370
FauI	CCCGC	1 cut(s)	266
FbaI	TGATCA	1 cut(s)	346
Fnu4HI	GCNGC	5 cut(s)	93, 209, 212, 368, 401
FokI	GGATG	3 cut(s)	316, 391, 419
Fsp4HI	GCNGC	5 cut(s)	93, 209, 212, 368, 401
FspBI	CTAG	5 cut(s)	452, 456, 461, 470, 526
GluI	GCNGC	5 cut(s)	93, 209, 212, 368, 401
HaeIII	GGCC	2 cut(s)	178, 214
Hin1II	CATG	2 cut(s)	205, 374
HinfI	GANTC	5 cut(s)	28, 73, 112, 220, 280
HphI	GGTGA	1 cut(s)	430
Hpy166II	GTNNAC	1 cut(s)	10
Hpy188I	TCNGA	6 cut(s)	50, 117, 237, 285, 351, 516
Hpy188III	TCNNGA	2 cut(s)	70, 433
Hpy8I	GTNNAC	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	325
HpyCH4III	ACNGT	1 cut(s)	291
HpyCH4V	TGCA	2 cut(s)	60, 370
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 461, 470
HpyF3I	CTNAG	4 cut(s)	96, 180, 234, 383
Hsp92II	CATG	2 cut(s)	205, 374
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	3 cut(s)	346, 466, 516
LmnI	GCTCC	3 cut(s)	229, 270, 397
LpnPI	CCDG	4 cut(s)	83, 239, 389, 489
Lsp1109I	GCAGC	3 cut(s)	79, 354, 412
LweI	GCATC	3 cut(s)	79, 369, 489
MaeI	CTAG	5 cut(s)	452, 456, 461, 470, 526
MalI	GATC	3 cut(s)	348, 468, 518
MbiI	CCGCTC	1 cut(s)	273
MboI	GATC	3 cut(s)	346, 466, 516
MboII	GAAGA	5 cut(s)	121, 340, 364, 450, 480
MhlI	GDGCHC	1 cut(s)	165
MmeI	TCCRAC	1 cut(s)	308
MnlI	CCTC	9 cut(s)	34, 198, 210, 239, 243, 252, 348, 369, 403
MslI	CAYNNNNRTG	1 cut(s)	87
MspA1I	CMGCKG	2 cut(s)	367, 403
MwoI	GCNNNNNNNGC	3 cut(s)	98, 461, 470
NdeII	GATC	3 cut(s)	346, 466, 516
NheI	GCTAGC	1 cut(s)	460
NlaIII	CATG	2 cut(s)	205, 374
NlaIV	GGNNCC	1 cut(s)	231
NmeAIII	GCCGAG	1 cut(s)	240
PfeI	GAWTC	5 cut(s)	28, 73, 112, 220, 280
PkrI	GCNGC	5 cut(s)	94, 210, 213, 369, 402
PspN4I	GGNNCC	1 cut(s)	231
PspPI	GGNCC	1 cut(s)	176
PvuII	CAGCTG	2 cut(s)	367, 403
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
RseI	CAYNNNNRTG	1 cut(s)	87
SatI	GCNGC	5 cut(s)	93, 209, 212, 368, 401
Sau3AI	GATC	3 cut(s)	346, 466, 516
Sau96I	GGNCC	1 cut(s)	176
SduI	GDGCHC	1 cut(s)	165
SfaNI	GCATC	3 cut(s)	79, 369, 489
SmiMI	CAYNNNNRTG	1 cut(s)	87
SsiI	CCGC	3 cut(s)	208, 211, 273
SspMI	CTAG	5 cut(s)	452, 456, 461, 470, 526
TaaI	ACNGT	1 cut(s)	291
TaqI	TCGA	1 cut(s)	432
TatI	WGTACW	1 cut(s)	198
TauI	GCSGC	2 cut(s)	211, 214
TfiI	GAWTC	5 cut(s)	28, 73, 112, 220, 280
TscAI	CASTG	2 cut(s)	12, 91
TseI	GCWGC	3 cut(s)	92, 367, 400
TspDTI	ATGAA	2 cut(s)	30, 254
TspGWI	ACGGA	2 cut(s)	66, 509
TspRI	CASTG	2 cut(s)	12, 91
XspI	CTAG	5 cut(s)	452, 456, 461, 470, 526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.