Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002608

Physical Location & Seq

Genomic Coordinates Reverse (-)

21427098 .. 21427691

Gene Structure 594 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG221500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGACTCTAAATCAACATGCCACGTCGCCGGTGGACCCTAGAGTTGTCGACGCCATGCTCCCCTACTACCTCACCCGCTACGGCAACCCCCACTCCCGGACCCACATGTACGGCTGGGAGTTCGACTCCGCCGTCGAAACCGCCCGCGCACAAGTCGCCGACTTAATAGGCGCGTCCCCCAAGGAGATCGTCTTCACCTCCGGCGCCACTGAGTGCAACAACATCTCCGTCAAGGGTGTCATGCACTTCTACAGGGACAAGAAGCGCCACATCATCACCACCCAGACGGAGCACAAGTGCGTCCTTGACTTCTGCCGCCATCTCCAGCAGGAGGGTTTTGACATCACATACCTTCCGGTGAAGACCGACGGGCTCATCGACCTGGACCAGCTCCGGGCCGCGATGGTGCCCGATACCGGACTCTTCTCTGTCATGGCAGTGAACAATGAAATCAGTGTGATTCAACCTATGGAGGAAATCAGAGAAATTTGCAACGAGTTCAAGATTTCATTTCATACTGATGCTGCTCAGGCGTTGGGGAAGATTCCGATTGATGTGGATAGGTGGAATGTGAGCTTGATGTCGTTGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006790 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016043 GO:0016226 GO:0016740 GO:0016782 GO:0016783 GO:0017076 GO:0022607 GO:0030554 GO:0031071 GO:0031163 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0051186 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 ko04122 map00730 map01100 map04122

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

197

Amino Acids

22.26

Weight (kDa)

5.56

Isoelectric Point (pI)

44.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_5	PF00266	3 - 197	2.6e-51	Aminotransferase class-V
Beta_elim_lyase	PF01212	42 - 176	1.5e-07	Beta-eliminating lyase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65720 AT5G65720 AT5G65720
fragaria_vesca	FvH4_1g18610 FvH4_3g39110 FvH4_4g11530
malus_domestica	MD15G1303800.v1.1
prunus_persica	Prupe.6G213300_v2.0.a1
pyrus_communis	pycom02g15750 pycom02g15760 pycom12g09240 pycom14g03250 pycom15g26680
rosa_chinensis	RchiOBHm_Chr2g0109351 RchiOBHm_Chr2g0109391 RchiOBHm_Chr5g0045361
rosa_laevigata	RLG00000017733
rosa_multiflora	Rmu_sc0000332.1_g000011 Rmu_sc0001940.1_g000003 Rmu_sc0012764.1_g000010
rosa_roxburghii	Rroxscaffold_2G00134280
rosa_rugosa	Rorug02G0159500
rosa_samantha	Rh2AG211300 Rh2AG211600 Rh2BG221300 Rh2BG221400 Rh2BG221500 Rh2BG222000 Rh2CG213300 Rh2CG213900 Rh2DG217100 Rh2DG217400 Rh4BG181900 Rh5AG243200 Rh5BG312000 Rh5DG322600 Rh6CG498200 Rh7BG128000
rosa_wichuraiana	Rw5G028200 Rw5G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	131
AccB1I	GGYRCC	2 cut(s)	203, 406
AccI	GTMKAC	1 cut(s)	48
AccII	CGCG	3 cut(s)	147, 173, 401
AciI	CCGC	6 cut(s)	76, 129, 141, 145, 316, 399
AcsI	RAATTY	1 cut(s)	486
AcyI	GRCGYC	2 cut(s)	51, 204
AdeI	CACNNNGTG	1 cut(s)	213
AfaI	GTAC	1 cut(s)	110
AfiI	CCNNNNNNNGG	4 cut(s)	96, 331, 394, 416
AflIII	ACRYGT	1 cut(s)	105
AgsI	TTSAA	2 cut(s)	464, 502
AjiI	CACGTC	1 cut(s)	24
AjnI	CCWGG	1 cut(s)	381
AluBI	AGCT	2 cut(s)	391, 576
AluI	AGCT	2 cut(s)	391, 576
Alw21I	GWGCWC	1 cut(s)	294
AoxI	GGCC	1 cut(s)	396
ApeKI	GCWGC	1 cut(s)	524
ApoI	RAATTY	1 cut(s)	486
AspLEI	GCGC	4 cut(s)	149, 173, 206, 267
AspS9I	GGNCC	4 cut(s)	34, 99, 385, 396
AsuC2I	CCSGG	2 cut(s)	97, 395
AsuHPI	GGTGA	4 cut(s)	64, 187, 268, 370
AvaII	GGWCC	3 cut(s)	34, 99, 385
BaeGI	GKGCMC	1 cut(s)	411
BanI	GGYRCC	2 cut(s)	203, 406
BanII	GRGCYC	1 cut(s)	375
BbsI	GAAGAC	2 cut(s)	184, 368
Bbv12I	GWGCWC	1 cut(s)	294
BbvI	GCAGC	1 cut(s)	511
BccI	CCATC	2 cut(s)	327, 397
BceAI	ACGGC	3 cut(s)	97, 116, 127
BciT130I	CCWGG	1 cut(s)	383
BcnI	CCSGG	2 cut(s)	97, 395
BfaI	CTAG	1 cut(s)	39
BfmI	CTRYAG	1 cut(s)	250
BfoI	RGCGCY	2 cut(s)	207, 268
BisI	GCNGC	3 cut(s)	316, 399, 525
BlsI	GCNGC	3 cut(s)	317, 400, 526
Bme1390I	CCNGG	3 cut(s)	97, 383, 395
Bme18I	GGWCC	3 cut(s)	34, 99, 385
BmgBI	CACGTC	1 cut(s)	24
BmgT120I	GGNCC	4 cut(s)	34, 99, 385, 396
BmiI	GGNNCC	4 cut(s)	36, 101, 205, 408
BmrFI	CCNGG	3 cut(s)	97, 383, 395
BmsI	GCATC	1 cut(s)	511
BpiI	GAAGAC	2 cut(s)	184, 368
BplI	GAGNNNNNCTC	2 cut(s)	110, 142
BpmI	CTGGAG	1 cut(s)	308
Bpu10I	CCTNAGC	1 cut(s)	528
BpuMI	CCSGG	2 cut(s)	97, 395
BsaHI	GRCGYC	2 cut(s)	51, 204
BsaJI	CCNNGG	1 cut(s)	180
BsaWI	WCCGGW	2 cut(s)	355, 416
BsaXI	ACNNNNNCTCC	6 cut(s)	77, 107, 209, 239, 281, 311
Bsc4I	CCNNNNNNNGG	4 cut(s)	96, 331, 394, 416
Bse118I	RCCGGY	1 cut(s)	28
BseBI	CCWGG	1 cut(s)	383
BseDI	CCNNGG	1 cut(s)	180
BseLI	CCNNNNNNNGG	4 cut(s)	96, 331, 394, 416
BseMII	CTCAG	2 cut(s)	201, 542
BseSI	GKGCMC	1 cut(s)	411
BseXI	GCAGC	1 cut(s)	511
BseYI	CCCAGC	1 cut(s)	114
Bsh1236I	CGCG	3 cut(s)	147, 173, 401
BshFI	GGCC	1 cut(s)	398
BshNI	GGYRCC	2 cut(s)	203, 406
BsiHKAI	GWGCWC	1 cut(s)	294
BsiSI	CCGG	6 cut(s)	29, 97, 201, 356, 394, 417
BslFI	GGGAC	2 cut(s)	160, 269
BslI	CCNNNNNNNGG	4 cut(s)	96, 331, 394, 416
BsmFI	GGGAC	2 cut(s)	160, 269
BsnI	GGCC	1 cut(s)	398
Bsp1286I	GDGCHC	3 cut(s)	294, 375, 411
Bsp143I	GATC	1 cut(s)	186
BspACI	CCGC	6 cut(s)	76, 129, 141, 145, 316, 399
BspANI	GGCC	1 cut(s)	398
BspCNI	CTCAG	2 cut(s)	202, 541
BspFNI	CGCG	3 cut(s)	147, 173, 401
BspLI	GGNNCC	4 cut(s)	36, 101, 205, 408
BspT107I	GGYRCC	2 cut(s)	203, 406
BsrFI	RCCGGY	1 cut(s)	28
BssAI	RCCGGY	1 cut(s)	28
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	1 cut(s)	186
BssNI	GRCGYC	2 cut(s)	51, 204
BssT1I	CCWWGG	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	383
Bst6I	CTCTTC	1 cut(s)	428
BstACI	GRCGYC	2 cut(s)	51, 204
BstC8I	GCNNGC	1 cut(s)	145
BstDEI	CTNAG	2 cut(s)	210, 528
BstFNI	CGCG	3 cut(s)	147, 173, 401
BstH2I	RGCGCY	2 cut(s)	207, 268
BstHHI	GCGC	4 cut(s)	149, 173, 206, 267
BstKTI	GATC	1 cut(s)	189
BstMBI	GATC	1 cut(s)	186
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 530
BstNI	CCWGG	1 cut(s)	383
BstNSI	RCATGY	2 cut(s)	20, 109
BstSCI	CCNGG	3 cut(s)	95, 381, 393
BstSFI	CTRYAG	1 cut(s)	250
BstSLI	GKGCMC	1 cut(s)	411
BstUI	CGCG	3 cut(s)	147, 173, 401
BstV1I	GCAGC	1 cut(s)	511
BstV2I	GAAGAC	2 cut(s)	184, 368
BsuRI	GGCC	1 cut(s)	398
BtgZI	GCGATG	1 cut(s)	416
BtrI	CACGTC	1 cut(s)	24
BtsI	GCAGTG	1 cut(s)	444
BtsIMutI	CAGTG	3 cut(s)	207, 444, 460
Cac8I	GCNNGC	1 cut(s)	145
CfoI	GCGC	4 cut(s)	149, 173, 206, 267
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	4 cut(s)	34, 99, 385, 396
CseI	GACGC	3 cut(s)	59, 162, 289
Csp6I	GTAC	1 cut(s)	109
CviAII	CATG	5 cut(s)	17, 55, 106, 241, 433
CviJI	RGCY	5 cut(s)	114, 373, 391, 398, 576
CviKI_1	RGCY	5 cut(s)	114, 373, 391, 398, 576
CviQI	GTAC	1 cut(s)	109
DdeI	CTNAG	2 cut(s)	210, 528
DinI	GGCGCC	1 cut(s)	205
DpnI	GATC	1 cut(s)	188
DpnII	GATC	1 cut(s)	186
DraIII	CACNNNGTG	1 cut(s)	213
DrdI	GACNNNNNNGTC	1 cut(s)	131
DseDI	GACNNNNNNGTC	1 cut(s)	131
Eam1104I	CTCTTC	1 cut(s)	428
EarI	CTCTTC	1 cut(s)	428
EciI	GGCGGA	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	180
Eco24I	GRGCYC	1 cut(s)	375
Eco47I	GGWCC	3 cut(s)	34, 99, 385
EcoRII	CCWGG	1 cut(s)	381
EcoT14I	CCWWGG	1 cut(s)	180
EcoT38I	GRGCYC	1 cut(s)	375
EgeI	GGCGCC	1 cut(s)	205
EheI	GGCGCC	1 cut(s)	205
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	5 cut(s)	20, 58, 109, 244, 436
FaiI	YATR	8 cut(s)	18, 56, 107, 242, 349, 434, 470, 516
FaqI	GGGAC	2 cut(s)	160, 269
FatI	CATG	5 cut(s)	16, 54, 105, 240, 432
FauI	CCCGC	2 cut(s)	83, 152
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	3 cut(s)	316, 399, 525
FriOI	GRGCYC	1 cut(s)	375
Fsp4HI	GCNGC	3 cut(s)	316, 399, 525
FspBI	CTAG	1 cut(s)	39
GlaI	GCGC	4 cut(s)	148, 172, 205, 266
GluI	GCNGC	3 cut(s)	316, 399, 525
GsaI	CCCAGC	1 cut(s)	118
GsuI	CTGGAG	1 cut(s)	308
HaeII	RGCGCY	2 cut(s)	207, 268
HaeIII	GGCC	1 cut(s)	398
HapII	CCGG	6 cut(s)	29, 97, 201, 356, 394, 417
HgaI	GACGC	3 cut(s)	59, 162, 289
HhaI	GCGC	4 cut(s)	149, 173, 206, 267
Hin1I	GRCGYC	2 cut(s)	51, 204
Hin1II	CATG	5 cut(s)	20, 58, 109, 244, 436
Hin6I	GCGC	4 cut(s)	147, 171, 204, 265
HinP1I	GCGC	4 cut(s)	147, 171, 204, 265
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	5 cut(s)	4, 125, 420, 460, 544
HpaII	CCGG	6 cut(s)	29, 97, 201, 356, 394, 417
HphI	GGTGA	4 cut(s)	64, 187, 268, 370
Hpy166II	GTNNAC	3 cut(s)	34, 49, 442
Hpy188I	TCNGA	2 cut(s)	482, 549
Hpy188III	TCNNGA	1 cut(s)	502
Hpy8I	GTNNAC	3 cut(s)	34, 49, 442
Hpy99I	CGWCG	4 cut(s)	28, 53, 137, 371
HpyAV	CCTTC	1 cut(s)	362
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	3 cut(s)	216, 244, 492
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 530
HpyF3I	CTNAG	2 cut(s)	210, 528
HpySE526I	ACGT	1 cut(s)	23
Hsp92I	GRCGYC	2 cut(s)	51, 204
Hsp92II	CATG	5 cut(s)	20, 58, 109, 244, 436
HspAI	GCGC	4 cut(s)	147, 171, 204, 265
KasI	GGCGCC	1 cut(s)	203
Kzo9I	GATC	1 cut(s)	186
LmnI	GCTCC	3 cut(s)	63, 289, 396
Lsp1109I	GCAGC	1 cut(s)	511
LweI	GCATC	1 cut(s)	511
MaeI	CTAG	1 cut(s)	39
MaeII	ACGT	1 cut(s)	23
MalI	GATC	1 cut(s)	188
MboI	GATC	1 cut(s)	186
MboII	GAAGA	4 cut(s)	184, 373, 415, 553
MhlI	GDGCHC	3 cut(s)	294, 375, 411
MluCI	AATT	1 cut(s)	486
Mly113I	GGCGCC	1 cut(s)	204
MlyI	GAGTC	2 cut(s)	119, 414
MnlI	CCTC	4 cut(s)	80, 208, 325, 466
MseI	TTAA	1 cut(s)	164
MslI	CAYNNNNRTG	2 cut(s)	437, 519
MspI	CCGG	6 cut(s)	29, 97, 201, 356, 394, 417
MspR9I	CCNGG	3 cut(s)	97, 383, 395
MvaI	CCWGG	1 cut(s)	383
MvnI	CGCG	3 cut(s)	147, 173, 401
MwoI	GCNNNNNNNGC	2 cut(s)	155, 530
NarI	GGCGCC	1 cut(s)	204
NciI	CCSGG	2 cut(s)	97, 395
NdeII	GATC	1 cut(s)	186
NlaIII	CATG	5 cut(s)	20, 58, 109, 244, 436
NlaIV	GGNNCC	4 cut(s)	36, 101, 205, 408
NspI	RCATGY	2 cut(s)	20, 109
PciI	ACATGT	1 cut(s)	105
PcsI	WCGNNNNNNNCGW	2 cut(s)	129, 375
PfeI	GAWTC	2 cut(s)	460, 544
PfoI	TCCNGGA	1 cut(s)	95
PkrI	GCNGC	3 cut(s)	317, 400, 526
PleI	GAGTC	2 cut(s)	119, 414
PluTI	GGCGCC	1 cut(s)	207
PpsI	GAGTC	2 cut(s)	119, 414
PscI	ACATGT	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	381
PspFI	CCCAGC	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	381
PspN4I	GGNNCC	4 cut(s)	36, 101, 205, 408
PspPI	GGNCC	4 cut(s)	34, 99, 385, 396
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
RseI	CAYNNNNRTG	2 cut(s)	437, 519
SalI	GTCGAC	1 cut(s)	47
SaqAI	TTAA	1 cut(s)	164
SatI	GCNGC	3 cut(s)	316, 399, 525
Sau3AI	GATC	1 cut(s)	186
Sau96I	GGNCC	4 cut(s)	34, 99, 385, 396
SchI	GAGTC	2 cut(s)	119, 414
ScrFI	CCNGG	3 cut(s)	97, 383, 395
SduI	GDGCHC	3 cut(s)	294, 375, 411
SetI	ASST	9 cut(s)	26, 72, 200, 354, 384, 393, 469, 566, 578
SfaNI	GCATC	1 cut(s)	511
SfcI	CTRYAG	1 cut(s)	250
SfoI	GGCGCC	1 cut(s)	205
SgrAI	CRCCGGYG	1 cut(s)	28
SinI	GGWCC	3 cut(s)	34, 99, 385
SmiMI	CAYNNNNRTG	2 cut(s)	437, 519
Sse9I	AATT	1 cut(s)	486
SsiI	CCGC	6 cut(s)	76, 129, 141, 145, 316, 399
SspDI	GGCGCC	1 cut(s)	203
SspMI	CTAG	1 cut(s)	39
StyD4I	CCNGG	3 cut(s)	95, 381, 393
StyI	CCWWGG	1 cut(s)	180
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	4 cut(s)	48, 123, 135, 378
TaqII	GACCGA	1 cut(s)	380
TasI	AATT	1 cut(s)	486
TauI	GCSGC	2 cut(s)	318, 401
TfiI	GAWTC	2 cut(s)	460, 544
Tru1I	TTAA	1 cut(s)	164
Tru9I	TTAA	1 cut(s)	164
TscAI	CASTG	3 cut(s)	214, 444, 460
TseI	GCWGC	1 cut(s)	524
TspDTI	ATGAA	3 cut(s)	462, 498, 503
TspGWI	ACGGA	2 cut(s)	217, 302
TspRI	CASTG	3 cut(s)	214, 444, 460
VpaK11BI	GGWCC	3 cut(s)	34, 99, 385
XapI	RAATTY	1 cut(s)	486
XceI	RCATGY	2 cut(s)	20, 109
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.