Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002608

Physical Location & Seq

Genomic Coordinates Reverse (-)

29660225 .. 29663007

Gene Structure 2783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG243200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGCAGTGAACAATGAAATCGGTGTGATTCAACCTATGGAGGAAATCAGAGATATCTGCAAGGAGTTCAAGATTCCATTTCACACTGATGCTGCTCAGGCGTTAGGGAAGATTCTGATTGATGTGGATAGGTGGAATGTGAGCTTGATGTCGTTGAGTGGGCACAAGGTGTATGGGCCTAAGGGAGTTGGGGCATTGTACATGAGGCGACGGCCGAGGATTCGGGTGGAGCCTCAGATGAATGGAGGTGGGCAGGAAAGGGGGATAAGGAGCGGGACGGTTCCGACGCCGTTGGTTGTGGGGATGGGGACTGCTTGCGAGATTGTGAAGAAGGAGATGGAGTATGATCATAAGAGGATTAGTCAACTGCAGGAGAGGATGCTACGTGGGATTAGGGAGCAGCTGGATGAGGTGGTGGTGAATGGCAGTATCGAGAGAAGGTCCAAAGAGATCATCAGCTGTAAGGAGAAACATTGCAGCTCAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006790 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016043 GO:0016226 GO:0016740 GO:0016782 GO:0016783 GO:0017076 GO:0022607 GO:0030554 GO:0031071 GO:0031163 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0051186 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 ko04122 map00730 map01100 map04122

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

162

Amino Acids

18.32

Weight (kDa)

9.27

Isoelectric Point (pI)

60.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_5	PF00266	1 - 159	7.7e-32	Aminotransferase class-V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65720 AT5G65720 AT5G65720
fragaria_vesca	FvH4_1g18610 FvH4_3g39110 FvH4_4g11530
malus_domestica	MD15G1303800.v1.1
prunus_persica	Prupe.6G213300_v2.0.a1
pyrus_communis	pycom02g15750 pycom02g15760 pycom12g09240 pycom14g03250 pycom15g26680
rosa_chinensis	RchiOBHm_Chr2g0109351 RchiOBHm_Chr2g0109391 RchiOBHm_Chr5g0045361
rosa_laevigata	RLG00000017733
rosa_multiflora	Rmu_sc0000332.1_g000011 Rmu_sc0001940.1_g000003 Rmu_sc0012764.1_g000010
rosa_roxburghii	Rroxscaffold_2G00134280
rosa_rugosa	Rorug02G0159500
rosa_samantha	Rh2AG211300 Rh2AG211600 Rh2BG221300 Rh2BG221400 Rh2BG221500 Rh2BG222000 Rh2CG213300 Rh2CG213900 Rh2DG217100 Rh2DG217400 Rh4BG181900 Rh5AG243200 Rh5BG312000 Rh5DG322600 Rh6CG498200 Rh7BG128000
rosa_wichuraiana	Rw5G028200 Rw5G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	273
AciI	CCGC	1 cut(s)	273
AcoI	YGGCCR	1 cut(s)	212
AcyI	GRCGYC	1 cut(s)	287
AdeI	CACNNNGTG	1 cut(s)	169
AfaI	GTAC	1 cut(s)	200
AgsI	TTSAA	2 cut(s)	32, 70
AluBI	AGCT	4 cut(s)	144, 403, 459, 480
AluI	AGCT	4 cut(s)	144, 403, 459, 480
AoxI	GGCC	2 cut(s)	176, 212
ApeKI	GCWGC	3 cut(s)	92, 400, 477
AspS9I	GGNCC	2 cut(s)	176, 441
AsuHPI	GGTGA	1 cut(s)	430
AvaII	GGWCC	1 cut(s)	441
AxyI	CCTNAGG	1 cut(s)	180
BaeGI	GKGCMC	1 cut(s)	165
BbvI	GCAGC	2 cut(s)	79, 412
BccI	CCATC	2 cut(s)	298, 331
BceAI	ACGGC	2 cut(s)	227, 274
BclI	TGATCA	1 cut(s)	346
BfmI	CTRYAG	1 cut(s)	368
BisI	GCNGC	3 cut(s)	93, 401, 478
BlsI	GCNGC	3 cut(s)	94, 402, 479
Bme18I	GGWCC	1 cut(s)	441
BmgT120I	GGNCC	2 cut(s)	176, 441
BmiI	GGNNCC	2 cut(s)	231, 282
BmsI	GCATC	2 cut(s)	79, 369
Bpu10I	CCTNAGC	1 cut(s)	96
BsaAI	YACGTR	1 cut(s)	386
BsaHI	GRCGYC	1 cut(s)	287
BsaJI	CCNNGG	1 cut(s)	215
BsaXI	ACNNNNNCTCC	2 cut(s)	326, 356
Bse21I	CCTNAGG	1 cut(s)	180
Bse3DI	GCAATG	1 cut(s)	472
BseDI	CCNNGG	1 cut(s)	215
BseGI	GGATG	3 cut(s)	309, 384, 412
BseMI	GCAATG	1 cut(s)	472
BseMII	CTCAG	2 cut(s)	110, 248
BseSI	GKGCMC	1 cut(s)	165
BseX3I	CGGCCG	1 cut(s)	212
BseXI	GCAGC	2 cut(s)	79, 412
Bsh1285I	CGRYCG	1 cut(s)	215
BshFI	GGCC	2 cut(s)	178, 214
BsiEI	CGRYCG	1 cut(s)	215
BslFI	GGGAC	2 cut(s)	289, 322
BsmFI	GGGAC	2 cut(s)	289, 322
BsnI	GGCC	2 cut(s)	178, 214
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp1407I	TGTACA	1 cut(s)	198
Bsp143I	GATC	2 cut(s)	346, 450
BspACI	CCGC	1 cut(s)	273
BspANI	GGCC	2 cut(s)	178, 214
BspCNI	CTCAG	2 cut(s)	109, 247
BspLI	GGNNCC	2 cut(s)	231, 282
BspMAI	CTGCAG	1 cut(s)	372
BsrBI	CCGCTC	1 cut(s)	273
BsrDI	GCAATG	1 cut(s)	472
BsrGI	TGTACA	1 cut(s)	198
BssECI	CCNNGG	1 cut(s)	215
BssMI	GATC	2 cut(s)	346, 450
BssNI	GRCGYC	1 cut(s)	287
Bst4CI	ACNGT	1 cut(s)	280
BstACI	GRCGYC	1 cut(s)	287
BstAUI	TGTACA	1 cut(s)	198
BstBAI	YACGTR	1 cut(s)	386
BstC8I	GCNNGC	1 cut(s)	316
BstDEI	CTNAG	3 cut(s)	96, 180, 234
BstF5I	GGATG	3 cut(s)	309, 384, 412
BstKTI	GATC	2 cut(s)	349, 453
BstMBI	GATC	2 cut(s)	346, 450
BstMCI	CGRYCG	1 cut(s)	215
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstSFI	CTRYAG	1 cut(s)	368
BstSLI	GKGCMC	1 cut(s)	165
BstV1I	GCAGC	2 cut(s)	79, 412
BstZI	CGGCCG	1 cut(s)	212
Bsu36I	CCTNAGG	1 cut(s)	180
BsuRI	GGCC	2 cut(s)	178, 214
BtsCI	GGATG	3 cut(s)	309, 384, 412
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	12, 84
Cac8I	GCNNGC	1 cut(s)	316
Cfr13I	GGNCC	2 cut(s)	176, 441
CseI	GACGC	1 cut(s)	295
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	1 cut(s)	202
CviJI	RGCY	7 cut(s)	144, 178, 214, 232, 403, 459, 480
CviKI_1	RGCY	7 cut(s)	144, 178, 214, 232, 403, 459, 480
CviQI	GTAC	1 cut(s)	199
DdeI	CTNAG	3 cut(s)	96, 180, 234
DpnI	GATC	2 cut(s)	348, 452
DpnII	GATC	2 cut(s)	346, 450
DraIII	CACNNNGTG	1 cut(s)	169
EaeI	YGGCCR	1 cut(s)	212
EagI	CGGCCG	1 cut(s)	212
EclXI	CGGCCG	1 cut(s)	212
Eco32I	GATATC	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	441
Eco52I	CGGCCG	1 cut(s)	212
Eco81I	CCTNAGG	1 cut(s)	180
EcoRV	GATATC	1 cut(s)	55
FaeI	CATG	1 cut(s)	205
FaiI	YATR	5 cut(s)	38, 174, 203, 345, 351
FaqI	GGGAC	2 cut(s)	289, 322
FatI	CATG	1 cut(s)	201
FauI	CCCGC	1 cut(s)	266
FbaI	TGATCA	1 cut(s)	346
Fnu4HI	GCNGC	3 cut(s)	93, 401, 478
FokI	GGATG	3 cut(s)	316, 391, 419
Fsp4HI	GCNGC	3 cut(s)	93, 401, 478
GluI	GCNGC	3 cut(s)	93, 401, 478
HaeIII	GGCC	2 cut(s)	178, 214
HgaI	GACGC	1 cut(s)	295
Hin1I	GRCGYC	1 cut(s)	287
Hin1II	CATG	1 cut(s)	205
HincII	GTYRAC	1 cut(s)	365
HindII	GTYRAC	1 cut(s)	365
HinfI	GANTC	4 cut(s)	28, 73, 112, 220
HphI	GGTGA	1 cut(s)	430
Hpy166II	GTNNAC	2 cut(s)	10, 365
Hpy188I	TCNGA	4 cut(s)	50, 117, 237, 285
Hpy188III	TCNNGA	2 cut(s)	70, 433
Hpy8I	GTNNAC	2 cut(s)	10, 365
Hpy99I	CGWCG	2 cut(s)	213, 289
HpyAV	CCTTC	2 cut(s)	325, 432
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	1 cut(s)	385
HpyCH4V	TGCA	3 cut(s)	60, 370, 477
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	3 cut(s)	96, 180, 234
HpySE526I	ACGT	1 cut(s)	385
Hsp92I	GRCGYC	1 cut(s)	287
Hsp92II	CATG	1 cut(s)	205
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	2 cut(s)	346, 450
LmnI	GCTCC	3 cut(s)	229, 270, 397
LpnPI	CCDG	4 cut(s)	83, 239, 356, 389
Lsp1109I	GCAGC	2 cut(s)	79, 412
LweI	GCATC	2 cut(s)	79, 369
MaeII	ACGT	1 cut(s)	385
MalI	GATC	2 cut(s)	348, 452
MbiI	CCGCTC	1 cut(s)	273
MboI	GATC	2 cut(s)	346, 450
MboII	GAAGA	2 cut(s)	121, 340
MhlI	GDGCHC	1 cut(s)	165
MmeI	TCCRAC	1 cut(s)	308
MnlI	CCTC	8 cut(s)	34, 198, 210, 239, 243, 348, 369, 403
MslI	CAYNNNNRTG	1 cut(s)	87
MspA1I	CMGCKG	2 cut(s)	403, 459
MwoI	GCNNNNNNNGC	1 cut(s)	98
NdeII	GATC	2 cut(s)	346, 450
NlaIII	CATG	1 cut(s)	205
NlaIV	GGNNCC	2 cut(s)	231, 282
NmeAIII	GCCGAG	1 cut(s)	240
PfeI	GAWTC	4 cut(s)	28, 73, 112, 220
PkrI	GCNGC	3 cut(s)	94, 402, 479
Ppu21I	YACGTR	1 cut(s)	386
PspN4I	GGNNCC	2 cut(s)	231, 282
PspPI	GGNCC	2 cut(s)	176, 441
PstI	CTGCAG	1 cut(s)	372
PvuII	CAGCTG	2 cut(s)	403, 459
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
RseI	CAYNNNNRTG	1 cut(s)	87
SatI	GCNGC	3 cut(s)	93, 401, 478
Sau3AI	GATC	2 cut(s)	346, 450
Sau96I	GGNCC	2 cut(s)	176, 441
SduI	GDGCHC	1 cut(s)	165
SfaNI	GCATC	2 cut(s)	79, 369
SfcI	CTRYAG	1 cut(s)	368
SinI	GGWCC	1 cut(s)	441
SmiMI	CAYNNNNRTG	1 cut(s)	87
SsiI	CCGC	1 cut(s)	273
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	1 cut(s)	388
TaqI	TCGA	1 cut(s)	432
TatI	WGTACW	1 cut(s)	198
TfiI	GAWTC	4 cut(s)	28, 73, 112, 220
TscAI	CASTG	2 cut(s)	12, 91
TseI	GCWGC	3 cut(s)	92, 400, 477
TspDTI	ATGAA	2 cut(s)	30, 254
TspRI	CASTG	2 cut(s)	12, 91
VpaK11BI	GGWCC	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.