Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002608

Physical Location & Seq

Genomic Coordinates Reverse (-)

20806878 .. 20814339

Gene Structure 7462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG217100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCCAGAGCGTAGCAAGAAAAAGTTGATGGCTTTGACCACTAATGTGATGAGAGATGATAGTGATAAGATTCTGTTTCATACTGATGCTGCTCAGGCATTGGGGAAGATTCCGATTGATGTGGATAAATGGGATGTGAGCTTGATGTCATTGAGTGGCCACAAGGTGTATGGGCCTAAGGGAGTTGGAGCATTGTACATGAGGCGGCAGCCGAGGATTCGGGTGGAGCCTCGGATGAATGGAGGTGGCCAGGAGAGGGGGATAAGGAGTGGGACGGTTCCGACGTCGTTTGTGTTGGGGATGGGGATTGCTTGCGAGATTGCGAAGAAGCTTTATGAAACGGTGAAGGAAGGGATCAATATTAAGGATGTTATGGTCACAGCATTGAGCAGTTGTGTGATGAGGGGGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006790 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016043 GO:0016226 GO:0016740 GO:0016782 GO:0016783 GO:0017076 GO:0022607 GO:0030554 GO:0031071 GO:0031163 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0051186 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 ko04122 map00730 map01100 map04122

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

137

Amino Acids

15.04

Weight (kDa)

9.73

Isoelectric Point (pI)

36.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_5	PF00266	22 - 110	4.1e-20	Aminotransferase class-V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65720 AT5G65720 AT5G65720
fragaria_vesca	FvH4_1g18610 FvH4_3g39110 FvH4_4g11530
malus_domestica	MD15G1303800.v1.1
prunus_persica	Prupe.6G213300_v2.0.a1
pyrus_communis	pycom02g15750 pycom02g15760 pycom12g09240 pycom14g03250 pycom15g26680
rosa_chinensis	RchiOBHm_Chr2g0109351 RchiOBHm_Chr2g0109391 RchiOBHm_Chr5g0045361
rosa_laevigata	RLG00000017733
rosa_multiflora	Rmu_sc0000332.1_g000011 Rmu_sc0001940.1_g000003 Rmu_sc0012764.1_g000010
rosa_roxburghii	Rroxscaffold_2G00134280
rosa_rugosa	Rorug02G0159500
rosa_samantha	Rh2AG211300 Rh2AG211600 Rh2BG221300 Rh2BG221400 Rh2BG221500 Rh2BG222000 Rh2CG213300 Rh2CG213900 Rh2DG217100 Rh2DG217400 Rh4BG181900 Rh5AG243200 Rh5BG312000 Rh5DG322600 Rh6CG498200 Rh7BG128000
rosa_wichuraiana	Rw5G028200 Rw5G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	287
AciI	CCGC	1 cut(s)	205
AclWI	GGATC	1 cut(s)	362
AcoI	YGGCCR	2 cut(s)	157, 247
AcyI	GRCGYC	1 cut(s)	284
AdeI	CACNNNGTG	1 cut(s)	166
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	256
AjnI	CCWGG	1 cut(s)	249
AleI	CACNNNNGTG	1 cut(s)	44
AluBI	AGCT	2 cut(s)	141, 331
AluI	AGCT	2 cut(s)	141, 331
AlwI	GGATC	1 cut(s)	362
AoxI	GGCC	3 cut(s)	157, 173, 247
ApeKI	GCWGC	2 cut(s)	89, 208
AspS9I	GGNCC	1 cut(s)	173
AsuHPI	GGTGA	1 cut(s)	355
AxyI	CCTNAGG	1 cut(s)	177
BalI	TGGCCA	2 cut(s)	159, 249
BbvI	GCAGC	2 cut(s)	76, 220
BccI	CCATC	2 cut(s)	22, 295
BciT130I	CCWGG	1 cut(s)	251
BisI	GCNGC	3 cut(s)	90, 206, 209
BlsI	GCNGC	3 cut(s)	91, 207, 210
Bme1390I	CCNGG	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	173
BmiI	GGNNCC	2 cut(s)	228, 279
BmrFI	CCNGG	1 cut(s)	251
BmsI	GCATC	1 cut(s)	76
Bpu10I	CCTNAGC	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	284
BsaJI	CCNNGG	2 cut(s)	212, 230
Bsc4I	CCNNNNNNNGG	1 cut(s)	256
Bse21I	CCTNAGG	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	2 cut(s)	212, 230
BseGI	GGATG	4 cut(s)	139, 240, 306, 373
BseLI	CCNNNNNNNGG	1 cut(s)	256
BseMII	CTCAG	1 cut(s)	107
BseXI	GCAGC	2 cut(s)	76, 220
BshFI	GGCC	3 cut(s)	159, 175, 249
BslFI	GGGAC	1 cut(s)	286
BslI	CCNNNNNNNGG	1 cut(s)	256
BsmFI	GGGAC	1 cut(s)	286
BsnI	GGCC	3 cut(s)	159, 175, 249
Bsp1407I	TGTACA	1 cut(s)	195
Bsp143I	GATC	1 cut(s)	354
BspACI	CCGC	1 cut(s)	205
BspANI	GGCC	3 cut(s)	159, 175, 249
BspCNI	CTCAG	1 cut(s)	106
BspLI	GGNNCC	2 cut(s)	228, 279
BspPI	GGATC	1 cut(s)	362
BsrGI	TGTACA	1 cut(s)	195
BssECI	CCNNGG	2 cut(s)	212, 230
BssMI	GATC	1 cut(s)	354
BssNI	GRCGYC	1 cut(s)	284
Bst2UI	CCWGG	1 cut(s)	251
Bst4CI	ACNGT	2 cut(s)	277, 343
BstACI	GRCGYC	1 cut(s)	284
BstAUI	TGTACA	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	313
BstDEI	CTNAG	2 cut(s)	93, 177
BstF5I	GGATG	4 cut(s)	139, 240, 306, 373
BstKTI	GATC	1 cut(s)	357
BstMBI	GATC	1 cut(s)	354
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNI	CCWGG	1 cut(s)	251
BstSCI	CCNGG	1 cut(s)	249
BstV1I	GCAGC	2 cut(s)	76, 220
Bsu36I	CCTNAGG	1 cut(s)	177
BsuRI	GGCC	3 cut(s)	159, 175, 249
BtsCI	GGATG	4 cut(s)	139, 240, 306, 373
Cac8I	GCNNGC	1 cut(s)	313
Cfr13I	GGNCC	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	1 cut(s)	199
CviJI	RGCY	8 cut(s)	32, 141, 159, 175, 211, 229, 249, 331
CviKI_1	RGCY	8 cut(s)	32, 141, 159, 175, 211, 229, 249, 331
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	2 cut(s)	93, 177
DpnI	GATC	1 cut(s)	356
DpnII	GATC	1 cut(s)	354
DraIII	CACNNNGTG	1 cut(s)	166
EaeI	YGGCCR	2 cut(s)	157, 247
Eco81I	CCTNAGG	1 cut(s)	177
EcoRII	CCWGG	1 cut(s)	249
FaeI	CATG	1 cut(s)	202
FaiI	YATR	5 cut(s)	81, 171, 200, 336, 374
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	1 cut(s)	198
Fnu4HI	GCNGC	3 cut(s)	90, 206, 209
FokI	GGATG	4 cut(s)	146, 247, 313, 380
Fsp4HI	GCNGC	3 cut(s)	90, 206, 209
GluI	GCNGC	3 cut(s)	90, 206, 209
HaeIII	GGCC	3 cut(s)	159, 175, 249
Hin1I	GRCGYC	1 cut(s)	284
Hin1II	CATG	1 cut(s)	202
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	3 cut(s)	70, 109, 217
HphI	GGTGA	1 cut(s)	355
Hpy188I	TCNGA	3 cut(s)	114, 234, 282
Hpy99I	CGWCG	2 cut(s)	286, 289
HpyAV	CCTTC	2 cut(s)	340, 344
HpyCH4III	ACNGT	2 cut(s)	277, 343
HpyCH4IV	ACGT	1 cut(s)	284
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	2 cut(s)	93, 177
HpySE526I	ACGT	1 cut(s)	284
Hsp92I	GRCGYC	1 cut(s)	284
Hsp92II	CATG	1 cut(s)	202
Kzo9I	GATC	1 cut(s)	354
LmnI	GCTCC	2 cut(s)	188, 226
LpnPI	CCDG	4 cut(s)	18, 80, 236, 263
Lsp1109I	GCAGC	2 cut(s)	76, 220
LweI	GCATC	1 cut(s)	76
MaeII	ACGT	1 cut(s)	284
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	1 cut(s)	356
MboI	GATC	1 cut(s)	354
MboII	GAAGA	2 cut(s)	118, 337
MlsI	TGGCCA	2 cut(s)	159, 249
MluNI	TGGCCA	2 cut(s)	159, 249
MmeI	TCCRAC	2 cut(s)	166, 305
MnlI	CCTC	6 cut(s)	195, 207, 236, 240, 249, 396
Mox20I	TGGCCA	2 cut(s)	159, 249
MscI	TGGCCA	2 cut(s)	159, 249
MseI	TTAA	1 cut(s)	363
MslI	CAYNNNNRTG	2 cut(s)	44, 84
Msp20I	TGGCCA	2 cut(s)	159, 249
MspR9I	CCNGG	1 cut(s)	251
MvaI	CCWGG	1 cut(s)	251
MwoI	GCNNNNNNNGC	1 cut(s)	95
NdeII	GATC	1 cut(s)	354
NlaIII	CATG	1 cut(s)	202
NlaIV	GGNNCC	2 cut(s)	228, 279
NmeAIII	GCCGAG	1 cut(s)	237
NmuCI	GTSAC	1 cut(s)	376
OliI	CACNNNNGTG	1 cut(s)	44
PcsI	WCGNNNNNNNCGW	1 cut(s)	281
PfeI	GAWTC	3 cut(s)	70, 109, 217
PkrI	GCNGC	3 cut(s)	91, 207, 210
Psp6I	CCWGG	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	2 cut(s)	228, 279
PspPI	GGNCC	1 cut(s)	173
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
RseI	CAYNNNNRTG	2 cut(s)	44, 84
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	3 cut(s)	90, 206, 209
Sau3AI	GATC	1 cut(s)	354
Sau96I	GGNCC	1 cut(s)	173
ScrFI	CCNGG	1 cut(s)	251
SetI	ASST	5 cut(s)	143, 168, 247, 287, 333
SfaNI	GCATC	1 cut(s)	76
SmiMI	CAYNNNNRTG	2 cut(s)	44, 84
SsiI	CCGC	1 cut(s)	205
SspI	AATATT	1 cut(s)	361
StyD4I	CCNGG	1 cut(s)	249
TaaI	ACNGT	2 cut(s)	277, 343
TaiI	ACGT	1 cut(s)	287
TatI	WGTACW	1 cut(s)	195
TauI	GCSGC	1 cut(s)	208
TfiI	GAWTC	3 cut(s)	70, 109, 217
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	2 cut(s)	89, 208
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	3 cut(s)	68, 251, 351
XcmI	CCANNNNNNNNNTGG	1 cut(s)	167
ZraI	GACGTC	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.