Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012764.1

Orthogroup ID

OG0002608

Physical Location & Seq

Genomic Coordinates Reverse (-)

59165 .. 61170

Gene Structure 2006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012764.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atgaattatgaaattggttttcactttcttgtgtttgctgaagactccaaacaaaggctttgttttgctgcaactgtacatcaagaacaagaagaagaatttgtaaacagtgcgattctctctccacacccaccaaaccttcatcactacccagacggagcacaagtgcatcctcgactcctgccgccatctccagcagaaggatttcgacatcacctaccttccggtgaaggccgacaggctcatcgacctggaccagctccgggcagtgatctggcccgataccggactggtctcagttatggcaaggaaatcagagatatctgcaaggagttcaaggttccgtttcacactgatgctgctcaggcattagggaagattccgattgatgtggataggtggaatgtgagcttgatgtcgttgagtgggcacaaggtgtatgggcctaagggagttggggcattgtacatgaggcaacggccgaggattcgggtggagcctcagatgaatggaggtgggcaggagagggggataaggagcgggacggtttcgacgccgttggttgtggggatggggactgcttgcgagattgcgaagaaggagatggagtatgatcagaataggattaactctggtcactggtcgtcgaactttgatcacttgtcattggtcgccggaggtttctggaagtctgcaaagagattatcggagattttatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006790 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016043 GO:0016226 GO:0016740 GO:0016782 GO:0016783 GO:0017076 GO:0022607 GO:0030554 GO:0031071 GO:0031163 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0051186 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 ko04122 map00730 map01100 map04122

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

239

Amino Acids

26.6

Weight (kDa)

8.75

Isoelectric Point (pI)

47.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65720 AT5G65720 AT5G65720
fragaria_vesca	FvH4_1g18610 FvH4_3g39110 FvH4_4g11530
malus_domestica	MD15G1303800.v1.1
prunus_persica	Prupe.6G213300_v2.0.a1
pyrus_communis	pycom02g15750 pycom02g15760 pycom12g09240 pycom14g03250 pycom15g26680
rosa_chinensis	RchiOBHm_Chr2g0109351 RchiOBHm_Chr2g0109391 RchiOBHm_Chr5g0045361
rosa_laevigata	RLG00000017733
rosa_multiflora	Rmu_sc0000332.1_g000011 Rmu_sc0001940.1_g000003 Rmu_sc0012764.1_g000010
rosa_roxburghii	Rroxscaffold_2G00134280
rosa_rugosa	Rorug02G0159500
rosa_samantha	Rh2AG211300 Rh2AG211600 Rh2BG221300 Rh2BG221400 Rh2BG221500 Rh2BG222000 Rh2CG213300 Rh2CG213900 Rh2DG217100 Rh2DG217400 Rh4BG181900 Rh5AG243200 Rh5BG312000 Rh5DG322600 Rh6CG498200 Rh7BG128000
rosa_wichuraiana	Rw5G028200 Rw5G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	540
AciI	CCGC	2 cut(s)	185, 540
AcoI	YGGCCR	1 cut(s)	479
AcsI	RAATTY	1 cut(s)	98
AcuI	CTGAAG	1 cut(s)	60
AcyI	GRCGYC	1 cut(s)	554
AdeI	CACNNNGTG	1 cut(s)	436
AfaI	GTAC	2 cut(s)	78, 467
AfiI	CCNNNNNNNGG	4 cut(s)	54, 200, 263, 285
AgsI	TTSAA	1 cut(s)	337
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	2 cut(s)	260, 411
AluI	AGCT	2 cut(s)	260, 411
Alw21I	GWGCWC	1 cut(s)	163
Alw26I	GTCTC	1 cut(s)	299
AoxI	GGCC	4 cut(s)	232, 276, 443, 479
ApeKI	GCWGC	2 cut(s)	68, 359
ApoI	RAATTY	1 cut(s)	98
Asp700I	GAANNNNTTC	1 cut(s)	204
AspS9I	GGNCC	3 cut(s)	254, 277, 443
AsuC2I	CCSGG	1 cut(s)	264
AsuHPI	GGTGA	2 cut(s)	206, 239
AvaII	GGWCC	1 cut(s)	254
AxyI	CCTNAGG	1 cut(s)	447
BaeGI	GKGCMC	1 cut(s)	432
BbsI	GAAGAC	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	163
BbvI	GCAGC	2 cut(s)	55, 346
BccI	CCATC	3 cut(s)	196, 565, 598
BceAI	ACGGC	2 cut(s)	494, 541
BciT130I	CCWGG	1 cut(s)	252
BclI	TGATCA	2 cut(s)	613, 655
BcnI	CCSGG	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	299
BisI	GCNGC	3 cut(s)	69, 185, 360
BlsI	GCNGC	3 cut(s)	70, 186, 361
Bme1390I	CCNGG	2 cut(s)	252, 264
Bme18I	GGWCC	1 cut(s)	254
BmgT120I	GGNCC	3 cut(s)	254, 277, 443
BmiI	GGNNCC	2 cut(s)	342, 498
BmrFI	CCNGG	2 cut(s)	252, 264
BmsI	GCATC	2 cut(s)	178, 346
BpiI	GAAGAC	1 cut(s)	48
BpmI	CTGGAG	1 cut(s)	177
Bpu10I	CCTNAGC	1 cut(s)	363
BpuMI	CCSGG	1 cut(s)	264
BsaHI	GRCGYC	1 cut(s)	554
BsaI	GGTCTC	1 cut(s)	299
BsaJI	CCNNGG	1 cut(s)	482
BsaWI	WCCGGW	2 cut(s)	224, 285
BsaXI	ACNNNNNCTCC	4 cut(s)	150, 180, 593, 623
Bsc4I	CCNNNNNNNGG	4 cut(s)	54, 200, 263, 285
Bse1I	ACTGG	2 cut(s)	295, 644
Bse21I	CCTNAGG	1 cut(s)	447
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	1 cut(s)	482
BseGI	GGATG	2 cut(s)	169, 576
BseLI	CCNNNNNNNGG	4 cut(s)	54, 200, 263, 285
BseMII	CTCAG	3 cut(s)	310, 377, 515
BseNI	ACTGG	2 cut(s)	295, 644
BseSI	GKGCMC	1 cut(s)	432
BseX3I	CGGCCG	1 cut(s)	479
BseXI	GCAGC	2 cut(s)	55, 346
Bsh1285I	CGRYCG	1 cut(s)	482
BshFI	GGCC	4 cut(s)	234, 278, 445, 481
BsiEI	CGRYCG	1 cut(s)	482
BsiHKAI	GWGCWC	1 cut(s)	163
BsiSI	CCGG	4 cut(s)	225, 263, 286, 675
BslFI	GGGAC	2 cut(s)	556, 589
BslI	CCNNNNNNNGG	4 cut(s)	54, 200, 263, 285
BsmAI	GTCTC	1 cut(s)	299
BsmFI	GGGAC	2 cut(s)	556, 589
BsnI	GGCC	4 cut(s)	234, 278, 445, 481
Bso31I	GGTCTC	1 cut(s)	299
Bsp1286I	GDGCHC	2 cut(s)	163, 432
Bsp1407I	TGTACA	2 cut(s)	76, 465
Bsp143I	GATC	3 cut(s)	271, 613, 655
BspACI	CCGC	2 cut(s)	185, 540
BspANI	GGCC	4 cut(s)	234, 278, 445, 481
BspCNI	CTCAG	3 cut(s)	309, 376, 514
BspLI	GGNNCC	2 cut(s)	342, 498
BspTNI	GGTCTC	1 cut(s)	299
BsrBI	CCGCTC	1 cut(s)	540
BsrGI	TGTACA	2 cut(s)	76, 465
BsrI	ACTGG	2 cut(s)	295, 644
BssECI	CCNNGG	1 cut(s)	482
BssMI	GATC	3 cut(s)	271, 613, 655
BssNI	GRCGYC	1 cut(s)	554
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	3 cut(s)	76, 110, 547
BstACI	GRCGYC	1 cut(s)	554
BstAUI	TGTACA	2 cut(s)	76, 465
BstC8I	GCNNGC	1 cut(s)	583
BstDEI	CTNAG	4 cut(s)	296, 363, 447, 501
BstF5I	GGATG	2 cut(s)	169, 576
BstKTI	GATC	3 cut(s)	274, 616, 658
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	3 cut(s)	271, 613, 655
BstMCI	CGRYCG	1 cut(s)	482
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstNI	CCWGG	1 cut(s)	252
BstSCI	CCNGG	2 cut(s)	250, 262
BstSLI	GKGCMC	1 cut(s)	432
BstV1I	GCAGC	2 cut(s)	55, 346
BstV2I	GAAGAC	1 cut(s)	48
BstZI	CGGCCG	1 cut(s)	479
Bsu36I	CCTNAGG	1 cut(s)	447
BsuRI	GGCC	4 cut(s)	234, 278, 445, 481
BtsCI	GGATG	2 cut(s)	169, 576
BtsI	GCAGTG	1 cut(s)	274
BtsIMutI	CAGTG	4 cut(s)	115, 274, 351, 637
Cac8I	GCNNGC	1 cut(s)	583
Cfr13I	GGNCC	3 cut(s)	254, 277, 443
CseI	GACGC	1 cut(s)	562
Csp6I	GTAC	2 cut(s)	77, 466
CviAII	CATG	1 cut(s)	469
CviJI	RGCY	9 cut(s)	58, 234, 242, 260, 278, 411, 445, 481, 499
CviKI_1	RGCY	9 cut(s)	58, 234, 242, 260, 278, 411, 445, 481, 499
CviQI	GTAC	2 cut(s)	77, 466
DdeI	CTNAG	4 cut(s)	296, 363, 447, 501
DpnI	GATC	3 cut(s)	273, 615, 657
DpnII	GATC	3 cut(s)	271, 613, 655
DraIII	CACNNNGTG	1 cut(s)	436
EaeI	YGGCCR	1 cut(s)	479
EagI	CGGCCG	1 cut(s)	479
EclXI	CGGCCG	1 cut(s)	479
Eco31I	GGTCTC	1 cut(s)	299
Eco32I	GATATC	1 cut(s)	322
Eco47I	GGWCC	1 cut(s)	254
Eco52I	CGGCCG	1 cut(s)	479
Eco57I	CTGAAG	1 cut(s)	60
Eco81I	CCTNAGG	1 cut(s)	447
EcoRII	CCWGG	1 cut(s)	250
EcoRV	GATATC	1 cut(s)	322
FaeI	CATG	1 cut(s)	472
FaiI	YATR	6 cut(s)	9, 303, 441, 470, 612, 718
FaqI	GGGAC	2 cut(s)	556, 589
FatI	CATG	1 cut(s)	468
FauI	CCCGC	1 cut(s)	533
FbaI	TGATCA	2 cut(s)	613, 655
Fnu4HI	GCNGC	3 cut(s)	69, 185, 360
FokI	GGATG	2 cut(s)	156, 583
Fsp4HI	GCNGC	3 cut(s)	69, 185, 360
GluI	GCNGC	3 cut(s)	69, 185, 360
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	4 cut(s)	234, 278, 445, 481
HapII	CCGG	4 cut(s)	225, 263, 286, 675
HgaI	GACGC	1 cut(s)	562
Hin1I	GRCGYC	1 cut(s)	554
Hin1II	CATG	1 cut(s)	472
HinfI	GANTC	5 cut(s)	44, 115, 177, 379, 487
HpaII	CCGG	4 cut(s)	225, 263, 286, 675
HphI	GGTGA	2 cut(s)	206, 239
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	5 cut(s)	317, 384, 504, 618, 709
Hpy188III	TCNNGA	2 cut(s)	83, 685
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	2 cut(s)	556, 649
HpyAV	CCTTC	5 cut(s)	149, 194, 224, 231, 592
HpyCH4III	ACNGT	3 cut(s)	76, 110, 547
HpyCH4V	TGCA	4 cut(s)	71, 169, 327, 695
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	4 cut(s)	296, 363, 447, 501
Hsp92I	GRCGYC	1 cut(s)	554
Hsp92II	CATG	1 cut(s)	472
Ksp22I	TGATCA	2 cut(s)	613, 655
Kzo9I	GATC	3 cut(s)	271, 613, 655
LmnI	GCTCC	4 cut(s)	158, 265, 496, 537
Lsp1109I	GCAGC	2 cut(s)	55, 346
LweI	GCATC	2 cut(s)	178, 346
MaeIII	GTNAC	1 cut(s)	635
MalI	GATC	3 cut(s)	273, 615, 657
MbiI	CCGCTC	1 cut(s)	540
MboI	GATC	3 cut(s)	271, 613, 655
MboII	GAAGA	5 cut(s)	53, 104, 107, 388, 607
MhlI	GDGCHC	2 cut(s)	163, 432
MluCI	AATT	3 cut(s)	4, 12, 98
MlyI	GAGTC	2 cut(s)	38, 171
MnlI	CCTC	7 cut(s)	183, 465, 477, 506, 510, 519, 671
MroXI	GAANNNNTTC	1 cut(s)	204
MseI	TTAA	1 cut(s)	627
MslI	CAYNNNNRTG	1 cut(s)	354
MspI	CCGG	4 cut(s)	225, 263, 286, 675
MspR9I	CCNGG	2 cut(s)	252, 264
MvaI	CCWGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	1 cut(s)	365
NciI	CCSGG	1 cut(s)	264
NdeII	GATC	3 cut(s)	271, 613, 655
NlaIII	CATG	1 cut(s)	472
NlaIV	GGNNCC	2 cut(s)	342, 498
NmeAIII	GCCGAG	1 cut(s)	507
NmuCI	GTSAC	1 cut(s)	635
PdmI	GAANNNNTTC	1 cut(s)	204
PfeI	GAWTC	3 cut(s)	115, 379, 487
PkrI	GCNGC	3 cut(s)	70, 186, 361
PleI	GAGTC	2 cut(s)	38, 171
PpsI	GAGTC	2 cut(s)	38, 171
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	2 cut(s)	342, 498
PspPI	GGNCC	3 cut(s)	254, 277, 443
RsaI	GTAC	2 cut(s)	78, 467
RsaNI	GTAC	2 cut(s)	77, 466
RseI	CAYNNNNRTG	1 cut(s)	354
SaqAI	TTAA	1 cut(s)	627
SatI	GCNGC	3 cut(s)	69, 185, 360
Sau3AI	GATC	3 cut(s)	271, 613, 655
Sau96I	GGNCC	3 cut(s)	254, 277, 443
SchI	GAGTC	2 cut(s)	38, 171
ScrFI	CCNGG	2 cut(s)	252, 264
SduI	GDGCHC	2 cut(s)	163, 432
SfaNI	GCATC	2 cut(s)	178, 346
SinI	GGWCC	1 cut(s)	254
SmiMI	CAYNNNNRTG	1 cut(s)	354
Sse9I	AATT	3 cut(s)	4, 12, 98
SsiI	CCGC	2 cut(s)	185, 540
StyD4I	CCNGG	2 cut(s)	250, 262
TaaI	ACNGT	3 cut(s)	76, 110, 547
TaqI	TCGA	5 cut(s)	175, 208, 247, 551, 647
TasI	AATT	3 cut(s)	4, 12, 98
TatI	WGTACW	2 cut(s)	76, 465
TauI	GCSGC	1 cut(s)	187
TfiI	GAWTC	3 cut(s)	115, 379, 487
Tru1I	TTAA	1 cut(s)	627
Tru9I	TTAA	1 cut(s)	627
TscAI	CASTG	4 cut(s)	115, 274, 358, 644
TseFI	GTSAC	1 cut(s)	635
TseI	GCWGC	2 cut(s)	68, 359
Tsp45I	GTSAC	1 cut(s)	635
TspDTI	ATGAA	4 cut(s)	17, 24, 131, 521
TspGWI	ACGGA	2 cut(s)	171, 333
TspRI	CASTG	4 cut(s)	115, 274, 358, 644
VpaK11BI	GGWCC	1 cut(s)	254
XapI	RAATTY	1 cut(s)	98
XmnI	GAANNNNTTC	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.