Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001940.1

Orthogroup ID

OG0002608

Physical Location & Seq

Genomic Coordinates Forward (+)

10743 .. 11724

Gene Structure 982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001940.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

atgagactccacagtcccaaaaaccaccccgacaccgtctaccacaaacccaccaaaaaccatgggattgtggaagccactctcactcgatctactcttcccttctcagtgcgattctctctccacacccaccaaacattcatcaccacccagacggagcacaagtgcgtcctcgactcttgcctccatctccagcaggagggtttcgacatcacctaccttcctgtgaaggccgacgggatcatcgacctgaaccagctccgggtcgagatccggccctataccggactggtctcagttatggcagtgaacaatgaaatcggtgtgattcaacctatggaggaaatcggagatatctgcaaggagttcaagattcagtttcacactgatgctgctcaggcgttagggaagattccgattgatgtggataggtggaatgtgagcttgatgtcgttgagtgggcacaagatgtatgggcctaagggagttggggcattgtacatgaggcggcggctgaggattcgggtggagcctcagatgaatggaggtgggcaggagagggggataaggagcgggacggttccgacgccgttggttgtggggatggggactgcttgcgagattgcgaagaaggagatggagtatgatcagaagaggattagtcagctgcaggagaggatgctgagtgggattagggagcaactggatgaggttggtggtgttggtggtgttgaagctttgctggtgttgaaggttttgctggttggttctatatttaatcccgctggcaccaaacatgggtcaaggcactccatagcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006790 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016043 GO:0016226 GO:0016740 GO:0016782 GO:0016783 GO:0017076 GO:0022607 GO:0030554 GO:0031071 GO:0031163 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0051186 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 ko04122 map00730 map01100 map04122

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

273

Amino Acids

30.32

Weight (kDa)

8.84

Isoelectric Point (pI)

45.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65720 AT5G65720 AT5G65720
fragaria_vesca	FvH4_1g18610 FvH4_3g39110 FvH4_4g11530
malus_domestica	MD15G1303800.v1.1
prunus_persica	Prupe.6G213300_v2.0.a1
pyrus_communis	pycom02g15750 pycom02g15760 pycom12g09240 pycom14g03250 pycom15g26680
rosa_chinensis	RchiOBHm_Chr2g0109351 RchiOBHm_Chr2g0109391 RchiOBHm_Chr5g0045361
rosa_laevigata	RLG00000017733
rosa_multiflora	Rmu_sc0000332.1_g000011 Rmu_sc0001940.1_g000003 Rmu_sc0012764.1_g000010
rosa_roxburghii	Rroxscaffold_2G00134280
rosa_rugosa	Rorug02G0159500
rosa_samantha	Rh2AG211300 Rh2AG211600 Rh2BG221300 Rh2BG221400 Rh2BG221500 Rh2BG222000 Rh2CG213300 Rh2CG213900 Rh2DG217100 Rh2DG217400 Rh4BG181900 Rh5AG243200 Rh5BG312000 Rh5DG322600 Rh6CG498200 Rh7BG128000
rosa_wichuraiana	Rw5G028200 Rw5G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	12
AccB1I	GGYRCC	1 cut(s)	788
AccBSI	CCGCTC	1 cut(s)	573
AccI	GTMKAC	1 cut(s)	39
AciI	CCGC	4 cut(s)	508, 511, 573, 783
AclWI	GGATC	2 cut(s)	248, 265
AcyI	GRCGYC	1 cut(s)	587
AfaI	GTAC	1 cut(s)	500
AfiI	CCNNNNNNNGG	4 cut(s)	199, 262, 284, 798
AgsI	TTSAA	4 cut(s)	332, 370, 734, 751
AluBI	AGCT	4 cut(s)	259, 444, 667, 737
AluI	AGCT	4 cut(s)	259, 444, 667, 737
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	1 cut(s)	298
AlwI	GGATC	2 cut(s)	248, 265
AoxI	GGCC	3 cut(s)	231, 275, 476
ApeKI	GCWGC	2 cut(s)	392, 667
AspS9I	GGNCC	2 cut(s)	276, 476
AsuC2I	CCSGG	1 cut(s)	263
AsuHPI	GGTGA	2 cut(s)	136, 205
AxyI	CCTNAGG	1 cut(s)	480
BaeGI	GKGCMC	1 cut(s)	465
BanI	GGYRCC	1 cut(s)	788
Bbv12I	GWGCWC	1 cut(s)	162
BbvCI	CCTCAGC	1 cut(s)	515
BbvI	GCAGC	2 cut(s)	379, 654
BccI	CCATC	3 cut(s)	195, 598, 631
BceAI	ACGGC	1 cut(s)	574
BclI	TGATCA	1 cut(s)	646
BcnI	CCSGG	1 cut(s)	263
BcoDI	GTCTC	1 cut(s)	298
BfmI	CTRYAG	1 cut(s)	668
BisI	GCNGC	4 cut(s)	393, 509, 512, 668
BlsI	GCNGC	4 cut(s)	394, 510, 513, 669
Bme1390I	CCNGG	1 cut(s)	263
BmgT120I	GGNCC	2 cut(s)	276, 476
BmiI	GGNNCC	3 cut(s)	531, 582, 790
BmrFI	CCNGG	1 cut(s)	263
BmsI	GCATC	2 cut(s)	379, 669
BpmI	CTGGAG	1 cut(s)	176
Bpu10I	CCTNAGC	2 cut(s)	396, 515
BpuMI	CCSGG	1 cut(s)	263
BsaHI	GRCGYC	1 cut(s)	587
BsaI	GGTCTC	1 cut(s)	298
BsaJI	CCNNGG	1 cut(s)	61
BsaWI	WCCGGW	1 cut(s)	284
BsaXI	ACNNNNNCTCC	4 cut(s)	149, 179, 626, 656
Bsc4I	CCNNNNNNNGG	4 cut(s)	199, 262, 284, 798
Bse1I	ACTGG	2 cut(s)	294, 708
Bse21I	CCTNAGG	1 cut(s)	480
BseDI	CCNNGG	1 cut(s)	61
BseGI	GGATG	3 cut(s)	609, 684, 712
BseLI	CCNNNNNNNGG	4 cut(s)	199, 262, 284, 798
BseMII	CTCAG	6 cut(s)	120, 309, 410, 506, 548, 674
BseNI	ACTGG	2 cut(s)	294, 708
BseSI	GKGCMC	1 cut(s)	465
BseXI	GCAGC	2 cut(s)	379, 654
BshFI	GGCC	3 cut(s)	233, 277, 478
BshNI	GGYRCC	1 cut(s)	788
BsiHKAI	GWGCWC	1 cut(s)	162
BsiSI	CCGG	3 cut(s)	262, 274, 285
BslFI	GGGAC	2 cut(s)	589, 622
BslI	CCNNNNNNNGG	4 cut(s)	199, 262, 284, 798
BsmAI	GTCTC	1 cut(s)	298
BsmFI	GGGAC	2 cut(s)	589, 622
BsnI	GGCC	3 cut(s)	233, 277, 478
Bso31I	GGTCTC	1 cut(s)	298
Bsp1286I	GDGCHC	2 cut(s)	162, 465
Bsp1407I	TGTACA	1 cut(s)	498
Bsp143I	GATC	4 cut(s)	89, 240, 270, 646
Bsp19I	CCATGG	1 cut(s)	61
BspACI	CCGC	4 cut(s)	508, 511, 573, 783
BspANI	GGCC	3 cut(s)	233, 277, 478
BspCNI	CTCAG	6 cut(s)	119, 308, 409, 507, 547, 675
BspLI	GGNNCC	3 cut(s)	531, 582, 790
BspMAI	CTGCAG	1 cut(s)	672
BspPI	GGATC	2 cut(s)	248, 265
BspT107I	GGYRCC	1 cut(s)	788
BspTNI	GGTCTC	1 cut(s)	298
BsrBI	CCGCTC	1 cut(s)	573
BsrGI	TGTACA	1 cut(s)	498
BsrI	ACTGG	2 cut(s)	294, 708
BssECI	CCNNGG	1 cut(s)	61
BssMI	GATC	4 cut(s)	89, 240, 270, 646
BssNI	GRCGYC	1 cut(s)	587
BssT1I	CCWWGG	1 cut(s)	61
Bst4CI	ACNGT	3 cut(s)	14, 37, 580
Bst6I	CTCTTC	2 cut(s)	102, 647
BstACI	GRCGYC	1 cut(s)	587
BstAUI	TGTACA	1 cut(s)	498
BstC8I	GCNNGC	2 cut(s)	616, 787
BstDEI	CTNAG	7 cut(s)	106, 295, 396, 480, 515, 534, 683
BstDSI	CCRYGG	1 cut(s)	61
BstF5I	GGATG	3 cut(s)	609, 684, 712
BstKTI	GATC	4 cut(s)	92, 243, 273, 649
BstMAI	GTCTC	1 cut(s)	298
BstMBI	GATC	4 cut(s)	89, 240, 270, 646
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstSCI	CCNGG	1 cut(s)	261
BstSFI	CTRYAG	1 cut(s)	668
BstSLI	GKGCMC	1 cut(s)	465
BstV1I	GCAGC	2 cut(s)	379, 654
BstX2I	RGATCY	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	270
Bsu36I	CCTNAGG	1 cut(s)	480
BsuRI	GGCC	3 cut(s)	233, 277, 478
BtgI	CCRYGG	1 cut(s)	61
BtsCI	GGATG	3 cut(s)	609, 684, 712
BtsI	GCAGTG	1 cut(s)	312
BtsIMutI	CAGTG	3 cut(s)	114, 312, 384
Cac8I	GCNNGC	2 cut(s)	616, 787
Cfr13I	GGNCC	2 cut(s)	276, 476
CseI	GACGC	2 cut(s)	157, 595
Csp6I	GTAC	1 cut(s)	499
CviAII	CATG	3 cut(s)	62, 502, 797
CviQI	GTAC	1 cut(s)	499
DdeI	CTNAG	7 cut(s)	106, 295, 396, 480, 515, 534, 683
DpnI	GATC	4 cut(s)	91, 242, 272, 648
DpnII	GATC	4 cut(s)	89, 240, 270, 646
DrdI	GACNNNNNNGTC	1 cut(s)	12
DseDI	GACNNNNNNGTC	1 cut(s)	12
Eam1104I	CTCTTC	2 cut(s)	102, 647
EarI	CTCTTC	2 cut(s)	102, 647
Eco130I	CCWWGG	1 cut(s)	61
Eco31I	GGTCTC	1 cut(s)	298
Eco32I	GATATC	1 cut(s)	355
Eco81I	CCTNAGG	1 cut(s)	480
EcoRV	GATATC	1 cut(s)	355
EcoT14I	CCWWGG	1 cut(s)	61
ErhI	CCWWGG	1 cut(s)	61
FaeI	CATG	3 cut(s)	65, 505, 800
FaqI	GGGAC	2 cut(s)	589, 622
FatI	CATG	3 cut(s)	61, 501, 796
FauI	CCCGC	2 cut(s)	566, 790
FbaI	TGATCA	1 cut(s)	646
FblI	GTMKAC	1 cut(s)	39
Fnu4HI	GCNGC	4 cut(s)	393, 509, 512, 668
FokI	GGATG	3 cut(s)	616, 691, 719
Fsp4HI	GCNGC	4 cut(s)	393, 509, 512, 668
GluI	GCNGC	4 cut(s)	393, 509, 512, 668
GsuI	CTGGAG	1 cut(s)	176
HaeIII	GGCC	3 cut(s)	233, 277, 478
HapII	CCGG	3 cut(s)	262, 274, 285
HgaI	GACGC	2 cut(s)	157, 595
Hin1I	GRCGYC	1 cut(s)	587
Hin1II	CATG	3 cut(s)	65, 505, 800
HindIII	AAGCTT	1 cut(s)	735
HinfI	GANTC	7 cut(s)	6, 114, 176, 328, 373, 412, 520
HpaII	CCGG	3 cut(s)	262, 274, 285
HphI	GGTGA	2 cut(s)	136, 205
Hpy166II	GTNNAC	2 cut(s)	40, 310
Hpy188I	TCNGA	5 cut(s)	350, 417, 537, 585, 651
Hpy188III	TCNNGA	2 cut(s)	268, 370
Hpy8I	GTNNAC	2 cut(s)	40, 310
Hpy99I	CGWCG	2 cut(s)	239, 589
HpyAV	CCTTC	5 cut(s)	112, 223, 230, 625, 745
HpyCH4III	ACNGT	3 cut(s)	14, 37, 580
HpyCH4V	TGCA	2 cut(s)	360, 670
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpyF3I	CTNAG	7 cut(s)	106, 295, 396, 480, 515, 534, 683
Hsp92I	GRCGYC	1 cut(s)	587
Hsp92II	CATG	3 cut(s)	65, 505, 800
Ksp22I	TGATCA	1 cut(s)	646
Kzo9I	GATC	4 cut(s)	89, 240, 270, 646
LmnI	GCTCC	5 cut(s)	157, 264, 529, 570, 697
Lsp1109I	GCAGC	2 cut(s)	379, 654
LweI	GCATC	2 cut(s)	379, 669
MalI	GATC	4 cut(s)	91, 242, 272, 648
MbiI	CCGCTC	1 cut(s)	573
MboI	GATC	4 cut(s)	89, 240, 270, 646
MboII	GAAGA	4 cut(s)	89, 421, 640, 664
MflI	RGATCY	1 cut(s)	270
MhlI	GDGCHC	2 cut(s)	162, 465
MlyI	GAGTC	1 cut(s)	170
MmeI	TCCRAC	1 cut(s)	608
MseI	TTAA	1 cut(s)	777
MslI	CAYNNNNRTG	1 cut(s)	387
MspA1I	CMGCKG	2 cut(s)	667, 785
MspI	CCGG	3 cut(s)	262, 274, 285
MspR9I	CCNGG	1 cut(s)	263
MwoI	GCNNNNNNNGC	1 cut(s)	398
NciI	CCSGG	1 cut(s)	263
NcoI	CCATGG	1 cut(s)	61
NdeII	GATC	4 cut(s)	89, 240, 270, 646
NlaIII	CATG	3 cut(s)	65, 505, 800
NlaIV	GGNNCC	3 cut(s)	531, 582, 790
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PfeI	GAWTC	5 cut(s)	114, 328, 373, 412, 520
PflFI	GACNNNGTC	1 cut(s)	35
PkrI	GCNGC	4 cut(s)	394, 510, 513, 669
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
PspN4I	GGNNCC	3 cut(s)	531, 582, 790
PspPI	GGNCC	2 cut(s)	276, 476
PstI	CTGCAG	1 cut(s)	672
PsuI	RGATCY	1 cut(s)	270
PsyI	GACNNNGTC	1 cut(s)	35
PvuII	CAGCTG	1 cut(s)	667
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
RseI	CAYNNNNRTG	1 cut(s)	387
SaqAI	TTAA	1 cut(s)	777
SatI	GCNGC	4 cut(s)	393, 509, 512, 668
Sau3AI	GATC	4 cut(s)	89, 240, 270, 646
Sau96I	GGNCC	2 cut(s)	276, 476
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	1 cut(s)	263
SduI	GDGCHC	2 cut(s)	162, 465
SfaNI	GCATC	2 cut(s)	379, 669
SfcI	CTRYAG	1 cut(s)	668
SmiMI	CAYNNNNRTG	1 cut(s)	387
SsiI	CCGC	4 cut(s)	508, 511, 573, 783
StyD4I	CCNGG	1 cut(s)	261
StyI	CCWWGG	1 cut(s)	61
TaaI	ACNGT	3 cut(s)	14, 37, 580
TaqI	TCGA	5 cut(s)	88, 174, 207, 246, 267
TatI	WGTACW	1 cut(s)	498
TauI	GCSGC	2 cut(s)	511, 514
TfiI	GAWTC	5 cut(s)	114, 328, 373, 412, 520
Tru1I	TTAA	1 cut(s)	777
Tru9I	TTAA	1 cut(s)	777
TscAI	CASTG	3 cut(s)	114, 312, 391
TseI	GCWGC	2 cut(s)	392, 667
TspDTI	ATGAA	3 cut(s)	130, 330, 554
TspGWI	ACGGA	1 cut(s)	170
TspRI	CASTG	3 cut(s)	114, 312, 391
Tth111I	GACNNNGTC	1 cut(s)	35
XmiI	GTMKAC	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.