Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002608

Physical Location & Seq

Genomic Coordinates Forward (+)

2557610 .. 2558440

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g03250.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGCCCTTGCCCTTCGCAACCTTCCTGCTCATCCGCCGCCAAACCCTAACCACAAAACCCGCCTCCACCGCCTCCGACTTCGTCCGCACCCTCTCCACCGCCGCTGCCGTCGCCGAAACCTACGACGACCCAGATGGAGTTTCAATGAAGGGGGTCAAAATTTCTGGCCGGCCTCTGTACCTGGACATGCAGGCCACGTCGCCGGTGGACCCTAGGGTCGTCGACGCCATGAATGGAGGTGGACAGGAGAAAGGGATTCGGAGCGGAACTGTTCCGACTCCATTGGTGGTAGGGTTTGGTGCGGCCTGCGAAATTGCGAAGAAGGAAATAGAGTATGATGAGAAGAGGGTAAGAGCGTTGCAGGATCGAATGTTGAAGGGAATCAGGAAGAACCTTGATATGGTTGTGGTGAATTGTAGCGAGGAGAGACGTTACCCCGGAAATTTGAATCTTTCGTTTGCTTATGTGGAAAGGGAGAGCTTGTTGATGGGGTTGAAGGAAGTGGCGGTGTCGAGTGGGAGTGCCTGTACCAGTGCGAGTTTGGAGCCCTCGTACGTGTTGAGGGCTTTGGGGGTGGATGAGGACATGGCTCATACTTCTATTTGGTTTGGGATTGGGCAGTTCACAACGGAGGAGGAGATTGACCGGGCGGTTCAGCTGACGGTGCAGCAGGTGAGCCCGCTTTATGAGATGGTGAAAGAAGGGATTGATATCAAGAGTATTCAGTGGTCACAGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006790 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016043 GO:0016226 GO:0016740 GO:0016782 GO:0016783 GO:0017076 GO:0022607 GO:0030554 GO:0031071 GO:0031163 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0051186 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 ko04122 map00730 map01100 map04122

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

247

Amino Acids

26.98

Weight (kDa)

5.25

Isoelectric Point (pI)

44.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65720 AT5G65720 AT5G65720
fragaria_vesca	FvH4_1g18610 FvH4_3g39110 FvH4_4g11530
malus_domestica	MD15G1303800.v1.1
prunus_persica	Prupe.6G213300_v2.0.a1
pyrus_communis	pycom02g15750 pycom02g15760 pycom12g09240 pycom14g03250 pycom15g26680
rosa_chinensis	RchiOBHm_Chr2g0109351 RchiOBHm_Chr2g0109391 RchiOBHm_Chr5g0045361
rosa_laevigata	RLG00000017733
rosa_multiflora	Rmu_sc0000332.1_g000011 Rmu_sc0001940.1_g000003 Rmu_sc0012764.1_g000010
rosa_roxburghii	Rroxscaffold_2G00134280
rosa_rugosa	Rorug02G0159500
rosa_samantha	Rh2AG211300 Rh2AG211600 Rh2BG221300 Rh2BG221400 Rh2BG221500 Rh2BG222000 Rh2CG213300 Rh2CG213900 Rh2DG217100 Rh2DG217400 Rh4BG181900 Rh5AG243200 Rh5BG312000 Rh5DG322600 Rh6CG498200 Rh7BG128000
rosa_wichuraiana	Rw5G028200 Rw5G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	661
AasI	GACNNNNNNGTC	1 cut(s)	215
Acc36I	ACCTGC	1 cut(s)	661
AccBSI	CCGCTC	1 cut(s)	264
AccI	GTMKAC	1 cut(s)	222
AclWI	GGATC	1 cut(s)	372
AcoI	YGGCCR	1 cut(s)	166
AcsI	RAATTY	2 cut(s)	159, 442
AcyI	GRCGYC	1 cut(s)	225
AfaI	GTAC	3 cut(s)	179, 529, 554
AfiI	CCNNNNNNNGG	1 cut(s)	400
AflIII	ACRYGT	1 cut(s)	555
AgsI	TTSAA	4 cut(s)	144, 376, 448, 496
AjiI	CACGTC	1 cut(s)	198
AjnI	CCWGG	1 cut(s)	180
AluBI	AGCT	2 cut(s)	480, 658
AluI	AGCT	2 cut(s)	480, 658
Alw26I	GTCTC	1 cut(s)	421
AlwI	GGATC	1 cut(s)	372
AoxI	GGCC	4 cut(s)	166, 170, 192, 303
ApeKI	GCWGC	2 cut(s)	104, 667
ApoI	RAATTY	2 cut(s)	159, 442
AspA2I	CCTAGG	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	208
AsuC2I	CCSGG	2 cut(s)	438, 647
AsuHPI	GGTGA	3 cut(s)	421, 685, 706
AvaII	GGWCC	1 cut(s)	208
AvrII	CCTAGG	1 cut(s)	212
BanII	GRGCYC	2 cut(s)	549, 680
BbvI	GCAGC	2 cut(s)	91, 679
BccI	CCATC	3 cut(s)	128, 481, 685
BceAI	ACGGC	1 cut(s)	92
BciT130I	CCWGG	1 cut(s)	182
BcnI	CCSGG	2 cut(s)	438, 647
BcoDI	GTCTC	1 cut(s)	421
BfaI	CTAG	1 cut(s)	213
BfuAI	ACCTGC	1 cut(s)	661
BisI	GCNGC	5 cut(s)	37, 102, 105, 303, 668
BlnI	CCTAGG	1 cut(s)	212
BlsI	GCNGC	5 cut(s)	38, 103, 106, 304, 669
Bme1390I	CCNGG	3 cut(s)	182, 438, 647
Bme18I	GGWCC	1 cut(s)	208
BmgBI	CACGTC	1 cut(s)	198
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	2 cut(s)	210, 546
BmrFI	CCNGG	3 cut(s)	182, 438, 647
BpuMI	CCSGG	2 cut(s)	438, 647
BsaAI	YACGTR	1 cut(s)	556
BsaBI	GATNNNNATC	1 cut(s)	710
BsaHI	GRCGYC	1 cut(s)	225
BsaJI	CCNNGG	2 cut(s)	212, 436
BsaXI	ACNNNNNCTCC	6 cut(s)	467, 497, 511, 536, 541, 566
Bsc4I	CCNNNNNNNGG	1 cut(s)	400
Bse118I	RCCGGY	2 cut(s)	168, 202
Bse1I	ACTGG	1 cut(s)	531
Bse8I	GATNNNNATC	1 cut(s)	710
BseBI	CCWGG	1 cut(s)	182
BseDI	CCNNGG	2 cut(s)	212, 436
BseGI	GGATG	2 cut(s)	30, 583
BseJI	GATNNNNATC	1 cut(s)	710
BseLI	CCNNNNNNNGG	1 cut(s)	400
BseNI	ACTGG	1 cut(s)	531
BseRI	GAGGAG	3 cut(s)	437, 647, 650
BseXI	GCAGC	2 cut(s)	91, 679
BsgI	GTGCAG	1 cut(s)	686
BshFI	GGCC	4 cut(s)	168, 172, 194, 305
BsiSI	CCGG	4 cut(s)	169, 203, 438, 646
BsiWI	CGTACG	1 cut(s)	552
BslI	CCNNNNNNNGG	1 cut(s)	400
BsmAI	GTCTC	1 cut(s)	421
BsmBI	CGTCTC	1 cut(s)	421
BsnI	GGCC	4 cut(s)	168, 172, 194, 305
Bsp1286I	GDGCHC	2 cut(s)	549, 680
Bsp143I	GATC	1 cut(s)	364
BspANI	GGCC	4 cut(s)	168, 172, 194, 305
BspLI	GGNNCC	2 cut(s)	210, 546
BspMI	ACCTGC	1 cut(s)	661
BspPI	GGATC	1 cut(s)	372
BsrBI	CCGCTC	1 cut(s)	264
BsrFI	RCCGGY	2 cut(s)	168, 202
BsrI	ACTGG	1 cut(s)	531
BssAI	RCCGGY	2 cut(s)	168, 202
BssECI	CCNNGG	2 cut(s)	212, 436
BssMI	GATC	1 cut(s)	364
BssNI	GRCGYC	1 cut(s)	225
BssT1I	CCWWGG	1 cut(s)	212
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	2 cut(s)	271, 664
Bst6I	CTCTTC	1 cut(s)	338
BstACI	GRCGYC	1 cut(s)	225
BstBAI	YACGTR	1 cut(s)	556
BstC8I	GCNNGC	4 cut(s)	170, 192, 307, 680
BstF5I	GGATG	2 cut(s)	30, 583
BstKTI	GATC	1 cut(s)	367
BstMAI	GTCTC	1 cut(s)	421
BstMBI	GATC	1 cut(s)	364
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 110, 664
BstNI	CCWGG	1 cut(s)	182
BstNSI	RCATGY	1 cut(s)	190
BstSCI	CCNGG	3 cut(s)	180, 436, 645
BstV1I	GCAGC	2 cut(s)	91, 679
BsuRI	GGCC	4 cut(s)	168, 172, 194, 305
BtrI	CACGTC	1 cut(s)	198
BtsCI	GGATG	2 cut(s)	30, 583
BtsIMutI	CAGTG	2 cut(s)	538, 731
BveI	ACCTGC	1 cut(s)	661
Cac8I	GCNNGC	4 cut(s)	170, 192, 307, 680
Cfr10I	RCCGGY	2 cut(s)	168, 202
Cfr13I	GGNCC	1 cut(s)	208
CseI	GACGC	1 cut(s)	233
Csp6I	GTAC	3 cut(s)	178, 528, 553
CviAII	CATG	3 cut(s)	187, 229, 586
CviQI	GTAC	3 cut(s)	178, 528, 553
DpnI	GATC	1 cut(s)	366
DpnII	GATC	1 cut(s)	364
DrdI	GACNNNNNNGTC	1 cut(s)	215
DseDI	GACNNNNNNGTC	1 cut(s)	215
EaeI	YGGCCR	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
EciI	GGCGGA	1 cut(s)	23
Eco130I	CCWWGG	1 cut(s)	212
Eco24I	GRGCYC	2 cut(s)	549, 680
Eco32I	GATATC	1 cut(s)	712
Eco47I	GGWCC	1 cut(s)	208
EcoRII	CCWGG	1 cut(s)	180
EcoRV	GATATC	1 cut(s)	712
EcoT14I	CCWWGG	1 cut(s)	212
EcoT38I	GRGCYC	2 cut(s)	549, 680
ErhI	CCWWGG	1 cut(s)	212
Esp3I	CGTCTC	1 cut(s)	421
FaeI	CATG	3 cut(s)	190, 232, 589
FaiI	YATR	8 cut(s)	188, 230, 336, 401, 465, 587, 594, 687
FatI	CATG	3 cut(s)	186, 228, 585
FauI	CCCGC	2 cut(s)	67, 687
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	5 cut(s)	37, 102, 105, 303, 668
FokI	GGATG	2 cut(s)	17, 590
FriOI	GRGCYC	2 cut(s)	549, 680
FseI	GGCCGGCC	1 cut(s)	172
Fsp4HI	GCNGC	5 cut(s)	37, 102, 105, 303, 668
FspBI	CTAG	1 cut(s)	213
GluI	GCNGC	5 cut(s)	37, 102, 105, 303, 668
HaeIII	GGCC	4 cut(s)	168, 172, 194, 305
HapII	CCGG	4 cut(s)	169, 203, 438, 646
HgaI	GACGC	1 cut(s)	233
Hin1I	GRCGYC	1 cut(s)	225
Hin1II	CATG	3 cut(s)	190, 232, 589
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	4 cut(s)	256, 277, 381, 448
HpaII	CCGG	4 cut(s)	169, 203, 438, 646
HphI	GGTGA	3 cut(s)	421, 685, 706
Hpy166II	GTNNAC	4 cut(s)	208, 223, 242, 624
Hpy188I	TCNGA	3 cut(s)	76, 261, 276
Hpy188III	TCNNGA	2 cut(s)	385, 715
Hpy8I	GTNNAC	4 cut(s)	208, 223, 242, 624
Hpy99I	CGWCG	5 cut(s)	113, 128, 202, 224, 227
HpyAV	CCTTC	7 cut(s)	22, 31, 142, 316, 370, 490, 695
HpyCH4III	ACNGT	2 cut(s)	271, 664
HpyCH4IV	ACGT	3 cut(s)	197, 430, 555
HpyCH4V	TGCA	3 cut(s)	190, 361, 667
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 110, 664
HpySE526I	ACGT	3 cut(s)	197, 430, 555
Hsp92I	GRCGYC	1 cut(s)	225
Hsp92II	CATG	3 cut(s)	190, 232, 589
KroI	GCCGGC	1 cut(s)	168
KroNI	GCCGGC	1 cut(s)	170
Kzo9I	GATC	1 cut(s)	364
LmnI	GCTCC	2 cut(s)	261, 544
Lsp1109I	GCAGC	2 cut(s)	91, 679
MaeI	CTAG	1 cut(s)	213
MaeII	ACGT	3 cut(s)	197, 430, 555
MaeIII	GTNAC	2 cut(s)	431, 729
MalI	GATC	1 cut(s)	366
MbiI	CCGCTC	1 cut(s)	264
MboI	GATC	1 cut(s)	364
MboII	GAAGA	3 cut(s)	331, 355, 400
MhlI	GDGCHC	2 cut(s)	549, 680
MluCI	AATT	4 cut(s)	159, 312, 412, 442
MlyI	GAGTC	1 cut(s)	271
MmeI	TCCRAC	2 cut(s)	99, 299
MroNI	GCCGGC	1 cut(s)	168
MseI	TTAA	1 cut(s)	739
MspA1I	CMGCKG	2 cut(s)	104, 658
MspI	CCGG	4 cut(s)	169, 203, 438, 646
MspR9I	CCNGG	3 cut(s)	182, 438, 647
MvaI	CCWGG	1 cut(s)	182
MwoI	GCNNNNNNNGC	3 cut(s)	68, 110, 664
NaeI	GCCGGC	1 cut(s)	170
NciI	CCSGG	2 cut(s)	438, 647
NdeII	GATC	1 cut(s)	364
NgoMIV	GCCGGC	1 cut(s)	168
NlaIII	CATG	3 cut(s)	190, 232, 589
NlaIV	GGNNCC	2 cut(s)	210, 546
NmuCI	GTSAC	1 cut(s)	729
NspI	RCATGY	1 cut(s)	190
PaqCI	CACCTGC	1 cut(s)	661
PdiI	GCCGGC	1 cut(s)	170
PfeI	GAWTC	3 cut(s)	256, 381, 448
Pfl23II	CGTACG	1 cut(s)	552
PflFI	GACNNNGTC	1 cut(s)	80
PkrI	GCNGC	5 cut(s)	38, 103, 106, 304, 669
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
Ppu21I	YACGTR	1 cut(s)	556
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PspLI	CGTACG	1 cut(s)	552
PspN4I	GGNNCC	2 cut(s)	210, 546
PspPI	GGNCC	1 cut(s)	208
PsyI	GACNNNGTC	1 cut(s)	80
PvuII	CAGCTG	1 cut(s)	658
RigI	GGCCGGCC	1 cut(s)	172
RsaI	GTAC	3 cut(s)	179, 529, 554
RsaNI	GTAC	3 cut(s)	178, 528, 553
SalI	GTCGAC	1 cut(s)	221
SaqAI	TTAA	1 cut(s)	739
SatI	GCNGC	5 cut(s)	37, 102, 105, 303, 668
Sau3AI	GATC	1 cut(s)	364
Sau96I	GGNCC	1 cut(s)	208
SchI	GAGTC	1 cut(s)	271
ScrFI	CCNGG	3 cut(s)	182, 438, 647
SduI	GDGCHC	2 cut(s)	549, 680
SgrAI	CRCCGGYG	1 cut(s)	202
SgrDI	CGTCGACG	1 cut(s)	221
SinI	GGWCC	1 cut(s)	208
Sse9I	AATT	4 cut(s)	159, 312, 412, 442
SspMI	CTAG	1 cut(s)	213
StyD4I	CCNGG	3 cut(s)	180, 436, 645
StyI	CCWWGG	1 cut(s)	212
TaaI	ACNGT	2 cut(s)	271, 664
TaiI	ACGT	3 cut(s)	200, 433, 558
TaqI	TCGA	3 cut(s)	222, 367, 512
TasI	AATT	4 cut(s)	159, 312, 412, 442
TauI	GCSGC	3 cut(s)	39, 104, 305
TfiI	GAWTC	3 cut(s)	256, 381, 448
Tru1I	TTAA	1 cut(s)	739
Tru9I	TTAA	1 cut(s)	739
TscAI	CASTG	2 cut(s)	538, 731
TseFI	GTSAC	1 cut(s)	729
TseI	GCWGC	2 cut(s)	104, 667
Tsp45I	GTSAC	1 cut(s)	729
TspDTI	ATGAA	2 cut(s)	161, 245
TspGWI	ACGGA	1 cut(s)	644
TspRI	CASTG	2 cut(s)	538, 731
Tth111I	GACNNNGTC	1 cut(s)	80
VpaK11BI	GGWCC	1 cut(s)	208
XapI	RAATTY	2 cut(s)	159, 442
XceI	RCATGY	1 cut(s)	190
XcmI	CCANNNNNNNNNTGG	2 cut(s)	202, 538
XmaJI	CCTAGG	1 cut(s)	212
XmiI	GTMKAC	1 cut(s)	222
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.