Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002608

Physical Location & Seq

Genomic Coordinates Reverse (-)

41159385 .. 41168757

Gene Structure 9373 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG312000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCAGTGAACAATGAAATCGGTGTGATTCAACCTATGGAGGAAATCGGAGATATCTGTAAGGAGTTCAAGATTCTGTTTCACACTGATGCTGCTCAGGCGTTAGGGAAGATTCTGATTGATGTGGATAGGTGGAATGTGAGCTTGACGTCGTTGAGTGGACACAAGGTGTATAGGCCTAAGGGAGTTGGGGCATTGTACATGGGGCGGCGGCCGAGGATTCGGGTGGAGCCTCAGATGAATGGAGGTGGGCAGGAGAGGGGGATAAGGAGCGGGATGGTTTCGACGCCGTTGGTTGTGGGGATGGGGACTGCTTGCGAGATTGCGAAGAAGGAGATGGAGTATGATCAGAAGAGGATTAGTCAGCTGCAGGAGAGGATGCTGAGTGGGATTAGGGAGCAGCTAGATGAGGTGGTGGTGAATGGCAGTATCGAGAGAAGGAGGGGGGAAACTATAATTAAAACTCCAGTTCAGACTGTCCAAACCATCTTCCAAGAGTTGCAATTGTTAGAAGACCAAATGTTGGGACGCAATGTTGATTTGGACTCTGGAGCAAAGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006790 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016043 GO:0016226 GO:0016740 GO:0016782 GO:0016783 GO:0017076 GO:0022607 GO:0030554 GO:0031071 GO:0031163 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0051186 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 ko04122 map00730 map01100 map04122

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

187

Amino Acids

20.91

Weight (kDa)

6.76

Isoelectric Point (pI)

48.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_5	PF00266	1 - 162	3.5e-27	Aminotransferase class-V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65720 AT5G65720 AT5G65720
fragaria_vesca	FvH4_1g18610 FvH4_3g39110 FvH4_4g11530
malus_domestica	MD15G1303800.v1.1
prunus_persica	Prupe.6G213300_v2.0.a1
pyrus_communis	pycom02g15750 pycom02g15760 pycom12g09240 pycom14g03250 pycom15g26680
rosa_chinensis	RchiOBHm_Chr2g0109351 RchiOBHm_Chr2g0109391 RchiOBHm_Chr5g0045361
rosa_laevigata	RLG00000017733
rosa_multiflora	Rmu_sc0000332.1_g000011 Rmu_sc0001940.1_g000003 Rmu_sc0012764.1_g000010
rosa_roxburghii	Rroxscaffold_2G00134280
rosa_rugosa	Rorug02G0159500
rosa_samantha	Rh2AG211300 Rh2AG211600 Rh2BG221300 Rh2BG221400 Rh2BG221500 Rh2BG222000 Rh2CG213300 Rh2CG213900 Rh2DG217100 Rh2DG217400 Rh4BG181900 Rh5AG243200 Rh5BG312000 Rh5DG322600 Rh6CG498200 Rh7BG128000
rosa_wichuraiana	Rw5G028200 Rw5G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	152
AccB7I	CCANNNNNTGG	1 cut(s)	523
AccBSI	CCGCTC	1 cut(s)	273
AciI	CCGC	3 cut(s)	208, 211, 273
AcoI	YGGCCR	1 cut(s)	212
AcyI	GRCGYC	2 cut(s)	149, 287
AdeI	CACNNNGTG	1 cut(s)	169
AfaI	GTAC	1 cut(s)	200
AfiI	CCNNNNNNNGG	1 cut(s)	523
AgsI	TTSAA	2 cut(s)	32, 70
AluBI	AGCT	4 cut(s)	144, 367, 403, 559
AluI	AGCT	4 cut(s)	144, 367, 403, 559
AoxI	GGCC	2 cut(s)	176, 212
ApeKI	GCWGC	3 cut(s)	92, 367, 400
AsuHPI	GGTGA	1 cut(s)	430
AxyI	CCTNAGG	1 cut(s)	180
BbsI	GAAGAC	1 cut(s)	519
BbvI	GCAGC	3 cut(s)	79, 354, 412
BccI	CCATC	4 cut(s)	271, 298, 331, 494
BceAI	ACGGC	1 cut(s)	274
BclI	TGATCA	1 cut(s)	346
BfaI	CTAG	1 cut(s)	404
BfmI	CTRYAG	1 cut(s)	368
BisI	GCNGC	5 cut(s)	93, 209, 212, 368, 401
BlsI	GCNGC	5 cut(s)	94, 210, 213, 369, 402
BmiI	GGNNCC	1 cut(s)	231
BmsI	GCATC	2 cut(s)	79, 369
BpiI	GAAGAC	1 cut(s)	519
BpmI	CTGGAG	1 cut(s)	450
Bpu10I	CCTNAGC	1 cut(s)	96
BsaHI	GRCGYC	2 cut(s)	149, 287
BsaJI	CCNNGG	1 cut(s)	215
BsaXI	ACNNNNNCTCC	2 cut(s)	326, 356
Bsc4I	CCNNNNNNNGG	1 cut(s)	523
Bse1I	ACTGG	1 cut(s)	467
Bse21I	CCTNAGG	1 cut(s)	180
Bse3DI	GCAATG	1 cut(s)	538
BseDI	CCNNGG	1 cut(s)	215
BseGI	GGATG	3 cut(s)	282, 309, 384
BseLI	CCNNNNNNNGG	1 cut(s)	523
BseMI	GCAATG	1 cut(s)	538
BseMII	CTCAG	3 cut(s)	110, 248, 374
BseNI	ACTGG	1 cut(s)	467
BseX3I	CGGCCG	1 cut(s)	212
BseXI	GCAGC	3 cut(s)	79, 354, 412
Bsh1285I	CGRYCG	1 cut(s)	215
BshFI	GGCC	2 cut(s)	178, 214
BsiEI	CGRYCG	1 cut(s)	215
BslFI	GGGAC	2 cut(s)	322, 540
BslI	CCNNNNNNNGG	1 cut(s)	523
BsmFI	GGGAC	2 cut(s)	322, 540
BsnI	GGCC	2 cut(s)	178, 214
Bsp1407I	TGTACA	1 cut(s)	198
Bsp143I	GATC	1 cut(s)	346
BspACI	CCGC	3 cut(s)	208, 211, 273
BspANI	GGCC	2 cut(s)	178, 214
BspCNI	CTCAG	3 cut(s)	109, 247, 375
BspLI	GGNNCC	1 cut(s)	231
BspMAI	CTGCAG	1 cut(s)	372
BsrBI	CCGCTC	1 cut(s)	273
BsrDI	GCAATG	1 cut(s)	538
BsrGI	TGTACA	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	467
BssECI	CCNNGG	1 cut(s)	215
BssMI	GATC	1 cut(s)	346
BssNI	GRCGYC	2 cut(s)	149, 287
Bst4CI	ACNGT	1 cut(s)	478
Bst6I	CTCTTC	1 cut(s)	347
BstACI	GRCGYC	2 cut(s)	149, 287
BstAUI	TGTACA	1 cut(s)	198
BstC8I	GCNNGC	1 cut(s)	316
BstDEI	CTNAG	4 cut(s)	96, 180, 234, 383
BstF5I	GGATG	3 cut(s)	282, 309, 384
BstKTI	GATC	1 cut(s)	349
BstMBI	GATC	1 cut(s)	346
BstMCI	CGRYCG	1 cut(s)	215
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstSFI	CTRYAG	1 cut(s)	368
BstV1I	GCAGC	3 cut(s)	79, 354, 412
BstV2I	GAAGAC	1 cut(s)	519
BstZI	CGGCCG	1 cut(s)	212
Bsu36I	CCTNAGG	1 cut(s)	180
BsuRI	GGCC	2 cut(s)	178, 214
BtsCI	GGATG	3 cut(s)	282, 309, 384
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	12, 84
Cac8I	GCNNGC	1 cut(s)	316
CseI	GACGC	2 cut(s)	295, 537
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	1 cut(s)	202
CviJI	RGCY	7 cut(s)	144, 178, 214, 232, 367, 403, 559
CviKI_1	RGCY	7 cut(s)	144, 178, 214, 232, 367, 403, 559
CviQI	GTAC	1 cut(s)	199
DdeI	CTNAG	4 cut(s)	96, 180, 234, 383
DpnI	GATC	1 cut(s)	348
DpnII	GATC	1 cut(s)	346
DraIII	CACNNNGTG	1 cut(s)	169
EaeI	YGGCCR	1 cut(s)	212
EagI	CGGCCG	1 cut(s)	212
Eam1104I	CTCTTC	1 cut(s)	347
EarI	CTCTTC	1 cut(s)	347
EclXI	CGGCCG	1 cut(s)	212
Eco147I	AGGCCT	1 cut(s)	178
Eco32I	GATATC	1 cut(s)	55
Eco52I	CGGCCG	1 cut(s)	212
Eco81I	CCTNAGG	1 cut(s)	180
EcoRV	GATATC	1 cut(s)	55
FaeI	CATG	1 cut(s)	205
FaiI	YATR	5 cut(s)	38, 174, 203, 345, 455
FaqI	GGGAC	2 cut(s)	322, 540
FatI	CATG	1 cut(s)	201
FauI	CCCGC	1 cut(s)	266
FbaI	TGATCA	1 cut(s)	346
Fnu4HI	GCNGC	5 cut(s)	93, 209, 212, 368, 401
FokI	GGATG	3 cut(s)	289, 316, 391
Fsp4HI	GCNGC	5 cut(s)	93, 209, 212, 368, 401
FspBI	CTAG	1 cut(s)	404
GluI	GCNGC	5 cut(s)	93, 209, 212, 368, 401
GsuI	CTGGAG	1 cut(s)	450
HaeIII	GGCC	2 cut(s)	178, 214
HgaI	GACGC	2 cut(s)	295, 537
Hin1I	GRCGYC	2 cut(s)	149, 287
Hin1II	CATG	1 cut(s)	205
HindIII	AAGCTT	1 cut(s)	557
HinfI	GANTC	5 cut(s)	28, 73, 112, 220, 545
HphI	GGTGA	1 cut(s)	430
Hpy166II	GTNNAC	2 cut(s)	10, 161
Hpy188I	TCNGA	5 cut(s)	50, 117, 237, 351, 474
Hpy188III	TCNNGA	3 cut(s)	70, 433, 549
Hpy8I	GTNNAC	2 cut(s)	10, 161
Hpy99I	CGWCG	2 cut(s)	154, 289
HpyAV	CCTTC	2 cut(s)	325, 432
HpyCH4III	ACNGT	1 cut(s)	478
HpyCH4IV	ACGT	1 cut(s)	149
HpyCH4V	TGCA	2 cut(s)	370, 502
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	4 cut(s)	96, 180, 234, 383
HpySE526I	ACGT	1 cut(s)	149
Hsp92I	GRCGYC	2 cut(s)	149, 287
Hsp92II	CATG	1 cut(s)	205
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	1 cut(s)	346
LmnI	GCTCC	4 cut(s)	229, 270, 397, 551
LpnPI	CCDG	5 cut(s)	83, 239, 356, 480, 534
Lsp1109I	GCAGC	3 cut(s)	79, 354, 412
LweI	GCATC	2 cut(s)	79, 369
MaeI	CTAG	1 cut(s)	404
MaeII	ACGT	1 cut(s)	149
MalI	GATC	1 cut(s)	348
MbiI	CCGCTC	1 cut(s)	273
MboI	GATC	1 cut(s)	346
MboII	GAAGA	5 cut(s)	121, 340, 364, 481, 524
MfeI	CAATTG	1 cut(s)	503
MluCI	AATT	2 cut(s)	456, 503
MlyI	GAGTC	1 cut(s)	539
MnlI	CCTC	9 cut(s)	34, 210, 239, 243, 252, 348, 369, 403, 435
MseI	TTAA	1 cut(s)	459
MslI	CAYNNNNRTG	1 cut(s)	87
MspA1I	CMGCKG	1 cut(s)	367
MunI	CAATTG	1 cut(s)	503
MwoI	GCNNNNNNNGC	1 cut(s)	98
NdeII	GATC	1 cut(s)	346
NlaIII	CATG	1 cut(s)	205
NlaIV	GGNNCC	1 cut(s)	231
NmeAIII	GCCGAG	1 cut(s)	240
PceI	AGGCCT	1 cut(s)	178
PfeI	GAWTC	4 cut(s)	28, 73, 112, 220
PflMI	CCANNNNNTGG	1 cut(s)	523
PkrI	GCNGC	5 cut(s)	94, 210, 213, 369, 402
PleI	GAGTC	1 cut(s)	539
PpsI	GAGTC	1 cut(s)	539
PspN4I	GGNNCC	1 cut(s)	231
PstI	CTGCAG	1 cut(s)	372
PvuII	CAGCTG	1 cut(s)	367
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
RseI	CAYNNNNRTG	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	459
SatI	GCNGC	5 cut(s)	93, 209, 212, 368, 401
Sau3AI	GATC	1 cut(s)	346
SchI	GAGTC	1 cut(s)	539
SfaNI	GCATC	2 cut(s)	79, 369
SfcI	CTRYAG	1 cut(s)	368
SmiMI	CAYNNNNRTG	1 cut(s)	87
Sse9I	AATT	2 cut(s)	456, 503
SseBI	AGGCCT	1 cut(s)	178
SsiI	CCGC	3 cut(s)	208, 211, 273
SspMI	CTAG	1 cut(s)	404
StuI	AGGCCT	1 cut(s)	178
TaaI	ACNGT	1 cut(s)	478
TaiI	ACGT	1 cut(s)	152
TaqI	TCGA	2 cut(s)	284, 432
TasI	AATT	2 cut(s)	456, 503
TatI	WGTACW	1 cut(s)	198
TauI	GCSGC	2 cut(s)	211, 214
TfiI	GAWTC	4 cut(s)	28, 73, 112, 220
Tru1I	TTAA	1 cut(s)	459
Tru9I	TTAA	1 cut(s)	459
TscAI	CASTG	2 cut(s)	12, 91
TseI	GCWGC	3 cut(s)	92, 367, 400
TspDTI	ATGAA	2 cut(s)	30, 254
TspRI	CASTG	2 cut(s)	12, 91
Van91I	CCANNNNNTGG	1 cut(s)	523
XspI	CTAG	1 cut(s)	404
ZraI	GACGTC	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.