Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002608

Physical Location & Seq

Genomic Coordinates Forward (+)

42887711 .. 42889324

Gene Structure 1614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G028360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGAATTATGAAATTGGTTTTCACTTTCTTGTGTTTGCTGAAGACTCCAAACAAAGGCTTTGTTTTGCTGCAACTGTACATCAAGAACAAGAAGAAGAATTTGTAAATGCGATTCTCTCTCCACACCCACCAAACCTTCATCACTACCCAGACGGAGCACAAGTGCATCCTCGACTCCTGCCGCCATCTCCAGCAGAAGGATTTCGACATCACCTACCTTCCGGTGAAGGCCGACAAGCTCATCGACCTGGACCAGCTCCGGGCAGCGATCTGGCCCGATACCGGACTGGTCTCAGTTATGGCAAGGAAATCAGAGATATCTGCAAGGAGTTCAAGGTTCCGTTTCACACTGATGCTGCTCAGGCATTAGGGAAGATTCTGATTGATGTGGATAGGTGGAATGTGAGCTTGATGTCGTTGAGTGGGCACAAGGTGTATGGGCCTAAGGGAGTTGGGGCATTGTACATGAGGCAACGGCCGAGGATTCGGGTGGAGCCTCAGATGAATGGAGGTGGGCAGGAGAGGGGGATAAGGAGCGGGACGGTTCCGACGCCGTTGGTTGTGGGGATGGGGACTGCTTGCGAGATTGCGAAGAAGGAGATGGAGTATGATCAGAAGAGGATTAGTCAGCTGCAGGAGAGGATGCTGAGTGGGATTAGGGAGCAGCTGGATGAGGTGGTGGTGAATGGCAATATCGAGAGAAGGTTTTCTGGAAGAAAACTTTCATTGTTTCTTCGTCCAAAAAAGCTACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006790 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016043 GO:0016226 GO:0016740 GO:0016782 GO:0016783 GO:0017076 GO:0022607 GO:0030554 GO:0031071 GO:0031163 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0051186 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 ko04122 map00730 map01100 map04122

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

251

Amino Acids

28.26

Weight (kDa)

9.38

Isoelectric Point (pI)

52.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_5	PF00266	102 - 230	5.3e-23	Aminotransferase class-V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65720 AT5G65720 AT5G65720
fragaria_vesca	FvH4_1g18610 FvH4_3g39110 FvH4_4g11530
malus_domestica	MD15G1303800.v1.1
prunus_persica	Prupe.6G213300_v2.0.a1
pyrus_communis	pycom02g15750 pycom02g15760 pycom12g09240 pycom14g03250 pycom15g26680
rosa_chinensis	RchiOBHm_Chr2g0109351 RchiOBHm_Chr2g0109391 RchiOBHm_Chr5g0045361
rosa_laevigata	RLG00000017733
rosa_multiflora	Rmu_sc0000332.1_g000011 Rmu_sc0001940.1_g000003 Rmu_sc0012764.1_g000010
rosa_roxburghii	Rroxscaffold_2G00134280
rosa_rugosa	Rorug02G0159500
rosa_samantha	Rh2AG211300 Rh2AG211600 Rh2BG221300 Rh2BG221400 Rh2BG221500 Rh2BG222000 Rh2CG213300 Rh2CG213900 Rh2DG217100 Rh2DG217400 Rh4BG181900 Rh5AG243200 Rh5BG312000 Rh5DG322600 Rh6CG498200 Rh7BG128000
rosa_wichuraiana	Rw5G028200 Rw5G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	537
AciI	CCGC	2 cut(s)	182, 537
AcoI	YGGCCR	1 cut(s)	476
AcsI	RAATTY	1 cut(s)	98
AcuI	CTGAAG	1 cut(s)	60
AcyI	GRCGYC	1 cut(s)	551
AdeI	CACNNNGTG	1 cut(s)	433
AfaI	GTAC	2 cut(s)	78, 464
AfiI	CCNNNNNNNGG	4 cut(s)	54, 197, 260, 282
AgsI	TTSAA	1 cut(s)	334
AjnI	CCWGG	1 cut(s)	247
AluBI	AGCT	6 cut(s)	239, 257, 408, 631, 667, 748
AluI	AGCT	6 cut(s)	239, 257, 408, 631, 667, 748
Alw21I	GWGCWC	1 cut(s)	160
Alw26I	GTCTC	1 cut(s)	296
AoxI	GGCC	4 cut(s)	229, 273, 440, 476
ApeKI	GCWGC	5 cut(s)	68, 264, 356, 631, 664
ApoI	RAATTY	1 cut(s)	98
Asp700I	GAANNNNTTC	3 cut(s)	201, 706, 721
AspS9I	GGNCC	3 cut(s)	251, 274, 440
AsuC2I	CCSGG	1 cut(s)	261
AsuHPI	GGTGA	3 cut(s)	203, 236, 694
AvaII	GGWCC	1 cut(s)	251
AxyI	CCTNAGG	1 cut(s)	444
BaeGI	GKGCMC	1 cut(s)	429
BbsI	GAAGAC	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	160
BbvI	GCAGC	5 cut(s)	55, 276, 343, 618, 676
BccI	CCATC	3 cut(s)	193, 562, 595
BceAI	ACGGC	2 cut(s)	491, 538
BciT130I	CCWGG	1 cut(s)	249
BclI	TGATCA	1 cut(s)	610
BcnI	CCSGG	1 cut(s)	261
BcoDI	GTCTC	1 cut(s)	296
BfmI	CTRYAG	2 cut(s)	632, 752
BisI	GCNGC	6 cut(s)	69, 182, 265, 357, 632, 665
BlsI	GCNGC	6 cut(s)	70, 183, 266, 358, 633, 666
Bme1390I	CCNGG	2 cut(s)	249, 261
Bme18I	GGWCC	1 cut(s)	251
BmgT120I	GGNCC	3 cut(s)	251, 274, 440
BmiI	GGNNCC	3 cut(s)	339, 495, 546
BmrFI	CCNGG	2 cut(s)	249, 261
BmsI	GCATC	3 cut(s)	175, 343, 633
BpiI	GAAGAC	1 cut(s)	48
BpmI	CTGGAG	1 cut(s)	174
Bpu10I	CCTNAGC	1 cut(s)	360
BpuMI	CCSGG	1 cut(s)	261
BsaHI	GRCGYC	1 cut(s)	551
BsaI	GGTCTC	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	479
BsaWI	WCCGGW	2 cut(s)	221, 282
BsaXI	ACNNNNNCTCC	4 cut(s)	147, 177, 590, 620
Bsc4I	CCNNNNNNNGG	4 cut(s)	54, 197, 260, 282
Bse1I	ACTGG	1 cut(s)	292
Bse21I	CCTNAGG	1 cut(s)	444
BseBI	CCWGG	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	479
BseGI	GGATG	4 cut(s)	166, 573, 648, 676
BseLI	CCNNNNNNNGG	4 cut(s)	54, 197, 260, 282
BseMII	CTCAG	4 cut(s)	307, 374, 512, 638
BseNI	ACTGG	1 cut(s)	292
BseSI	GKGCMC	1 cut(s)	429
BseX3I	CGGCCG	1 cut(s)	476
BseXI	GCAGC	5 cut(s)	55, 276, 343, 618, 676
Bsh1285I	CGRYCG	1 cut(s)	479
BshFI	GGCC	4 cut(s)	231, 275, 442, 478
BsiEI	CGRYCG	1 cut(s)	479
BsiHKAI	GWGCWC	1 cut(s)	160
BsiSI	CCGG	3 cut(s)	222, 260, 283
BslFI	GGGAC	2 cut(s)	553, 586
BslI	CCNNNNNNNGG	4 cut(s)	54, 197, 260, 282
BsmAI	GTCTC	1 cut(s)	296
BsmFI	GGGAC	2 cut(s)	553, 586
BsnI	GGCC	4 cut(s)	231, 275, 442, 478
Bso31I	GGTCTC	1 cut(s)	296
Bsp1286I	GDGCHC	2 cut(s)	160, 429
Bsp1407I	TGTACA	2 cut(s)	76, 462
Bsp143I	GATC	2 cut(s)	268, 610
BspACI	CCGC	2 cut(s)	182, 537
BspANI	GGCC	4 cut(s)	231, 275, 442, 478
BspCNI	CTCAG	4 cut(s)	306, 373, 511, 639
BspLI	GGNNCC	3 cut(s)	339, 495, 546
BspMAI	CTGCAG	1 cut(s)	636
BspTNI	GGTCTC	1 cut(s)	296
BsrBI	CCGCTC	1 cut(s)	537
BsrGI	TGTACA	2 cut(s)	76, 462
BsrI	ACTGG	1 cut(s)	292
BssECI	CCNNGG	1 cut(s)	479
BssMI	GATC	2 cut(s)	268, 610
BssNI	GRCGYC	1 cut(s)	551
Bst2UI	CCWGG	1 cut(s)	249
Bst4CI	ACNGT	3 cut(s)	76, 544, 753
Bst6I	CTCTTC	1 cut(s)	611
BstACI	GRCGYC	1 cut(s)	551
BstAUI	TGTACA	2 cut(s)	76, 462
BstC8I	GCNNGC	1 cut(s)	580
BstDEI	CTNAG	5 cut(s)	293, 360, 444, 498, 647
BstF5I	GGATG	4 cut(s)	166, 573, 648, 676
BstKTI	GATC	2 cut(s)	271, 613
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	2 cut(s)	268, 610
BstMCI	CGRYCG	1 cut(s)	479
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstNI	CCWGG	1 cut(s)	249
BstSCI	CCNGG	2 cut(s)	247, 259
BstSFI	CTRYAG	2 cut(s)	632, 752
BstSLI	GKGCMC	1 cut(s)	429
BstV1I	GCAGC	5 cut(s)	55, 276, 343, 618, 676
BstV2I	GAAGAC	1 cut(s)	48
BstZI	CGGCCG	1 cut(s)	476
Bsu36I	CCTNAGG	1 cut(s)	444
BsuRI	GGCC	4 cut(s)	231, 275, 442, 478
BtsCI	GGATG	4 cut(s)	166, 573, 648, 676
BtsIMutI	CAGTG	1 cut(s)	348
Cac8I	GCNNGC	1 cut(s)	580
Cfr13I	GGNCC	3 cut(s)	251, 274, 440
CseI	GACGC	1 cut(s)	559
Csp6I	GTAC	2 cut(s)	77, 463
CviAII	CATG	1 cut(s)	466
CviQI	GTAC	2 cut(s)	77, 463
DdeI	CTNAG	5 cut(s)	293, 360, 444, 498, 647
DpnI	GATC	2 cut(s)	270, 612
DpnII	GATC	2 cut(s)	268, 610
DraIII	CACNNNGTG	1 cut(s)	433
EaeI	YGGCCR	1 cut(s)	476
EagI	CGGCCG	1 cut(s)	476
Eam1104I	CTCTTC	1 cut(s)	611
EarI	CTCTTC	1 cut(s)	611
EclXI	CGGCCG	1 cut(s)	476
Eco31I	GGTCTC	1 cut(s)	296
Eco32I	GATATC	1 cut(s)	319
Eco47I	GGWCC	1 cut(s)	251
Eco52I	CGGCCG	1 cut(s)	476
Eco57I	CTGAAG	1 cut(s)	60
Eco81I	CCTNAGG	1 cut(s)	444
EcoRII	CCWGG	1 cut(s)	247
EcoRV	GATATC	1 cut(s)	319
FaeI	CATG	1 cut(s)	469
FaiI	YATR	5 cut(s)	9, 300, 438, 467, 609
FaqI	GGGAC	2 cut(s)	553, 586
FatI	CATG	1 cut(s)	465
FauI	CCCGC	1 cut(s)	530
FbaI	TGATCA	1 cut(s)	610
Fnu4HI	GCNGC	6 cut(s)	69, 182, 265, 357, 632, 665
FokI	GGATG	4 cut(s)	153, 580, 655, 683
Fsp4HI	GCNGC	6 cut(s)	69, 182, 265, 357, 632, 665
GluI	GCNGC	6 cut(s)	69, 182, 265, 357, 632, 665
GsuI	CTGGAG	1 cut(s)	174
HaeIII	GGCC	4 cut(s)	231, 275, 442, 478
HapII	CCGG	3 cut(s)	222, 260, 283
HgaI	GACGC	1 cut(s)	559
Hin1I	GRCGYC	1 cut(s)	551
Hin1II	CATG	1 cut(s)	469
HinfI	GANTC	5 cut(s)	44, 112, 174, 376, 484
HpaII	CCGG	3 cut(s)	222, 260, 283
HphI	GGTGA	3 cut(s)	203, 236, 694
Hpy188I	TCNGA	5 cut(s)	314, 381, 501, 549, 615
Hpy188III	TCNNGA	3 cut(s)	83, 697, 711
Hpy99I	CGWCG	1 cut(s)	553
HpyAV	CCTTC	6 cut(s)	146, 191, 221, 228, 589, 696
HpyCH4III	ACNGT	3 cut(s)	76, 544, 753
HpyCH4V	TGCA	4 cut(s)	71, 166, 324, 634
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpyF3I	CTNAG	5 cut(s)	293, 360, 444, 498, 647
Hsp92I	GRCGYC	1 cut(s)	551
Hsp92II	CATG	1 cut(s)	469
Ksp22I	TGATCA	1 cut(s)	610
Kzo9I	GATC	2 cut(s)	268, 610
LmnI	GCTCC	5 cut(s)	155, 262, 493, 534, 661
Lsp1109I	GCAGC	5 cut(s)	55, 276, 343, 618, 676
LweI	GCATC	3 cut(s)	175, 343, 633
MalI	GATC	2 cut(s)	270, 612
MbiI	CCGCTC	1 cut(s)	537
MboI	GATC	2 cut(s)	268, 610
MboII	GAAGA	8 cut(s)	53, 104, 107, 385, 604, 628, 725, 726
MhlI	GDGCHC	2 cut(s)	160, 429
MluCI	AATT	3 cut(s)	4, 12, 98
MlyI	GAGTC	2 cut(s)	38, 168
MmeI	TCCRAC	1 cut(s)	572
MnlI	CCTC	9 cut(s)	180, 462, 474, 503, 507, 516, 612, 633, 667
MroXI	GAANNNNTTC	3 cut(s)	201, 706, 721
MslI	CAYNNNNRTG	1 cut(s)	351
MspA1I	CMGCKG	2 cut(s)	631, 667
MspI	CCGG	3 cut(s)	222, 260, 283
MspR9I	CCNGG	2 cut(s)	249, 261
MvaI	CCWGG	1 cut(s)	249
MwoI	GCNNNNNNNGC	1 cut(s)	362
NciI	CCSGG	1 cut(s)	261
NdeII	GATC	2 cut(s)	268, 610
NlaIII	CATG	1 cut(s)	469
NlaIV	GGNNCC	3 cut(s)	339, 495, 546
NmeAIII	GCCGAG	1 cut(s)	504
PdmI	GAANNNNTTC	3 cut(s)	201, 706, 721
PfeI	GAWTC	3 cut(s)	112, 376, 484
PkrI	GCNGC	6 cut(s)	70, 183, 266, 358, 633, 666
PleI	GAGTC	2 cut(s)	38, 168
PpsI	GAGTC	2 cut(s)	38, 168
Psp6I	CCWGG	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	247
PspN4I	GGNNCC	3 cut(s)	339, 495, 546
PspPI	GGNCC	3 cut(s)	251, 274, 440
PstI	CTGCAG	1 cut(s)	636
PvuII	CAGCTG	2 cut(s)	631, 667
RsaI	GTAC	2 cut(s)	78, 464
RsaNI	GTAC	2 cut(s)	77, 463
RseI	CAYNNNNRTG	1 cut(s)	351
SatI	GCNGC	6 cut(s)	69, 182, 265, 357, 632, 665
Sau3AI	GATC	2 cut(s)	268, 610
Sau96I	GGNCC	3 cut(s)	251, 274, 440
SchI	GAGTC	2 cut(s)	38, 168
ScrFI	CCNGG	2 cut(s)	249, 261
SduI	GDGCHC	2 cut(s)	160, 429
SfaNI	GCATC	3 cut(s)	175, 343, 633
SfcI	CTRYAG	2 cut(s)	632, 752
SinI	GGWCC	1 cut(s)	251
SmiMI	CAYNNNNRTG	1 cut(s)	351
Sse9I	AATT	3 cut(s)	4, 12, 98
SsiI	CCGC	2 cut(s)	182, 537
StyD4I	CCNGG	2 cut(s)	247, 259
TaaI	ACNGT	3 cut(s)	76, 544, 753
TaqI	TCGA	4 cut(s)	172, 205, 244, 696
TasI	AATT	3 cut(s)	4, 12, 98
TatI	WGTACW	2 cut(s)	76, 462
TauI	GCSGC	1 cut(s)	184
TfiI	GAWTC	3 cut(s)	112, 376, 484
TscAI	CASTG	1 cut(s)	355
TseI	GCWGC	5 cut(s)	68, 264, 356, 631, 664
TspDTI	ATGAA	5 cut(s)	17, 24, 128, 518, 714
TspGWI	ACGGA	2 cut(s)	168, 330
TspRI	CASTG	1 cut(s)	355
VpaK11BI	GGWCC	1 cut(s)	251
XapI	RAATTY	1 cut(s)	98
XmnI	GAANNNNTTC	3 cut(s)	201, 706, 721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.