Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002608

Physical Location & Seq

Genomic Coordinates Forward (+)

14203356 .. 14203759

Gene Structure 404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0159500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGCGACCGATAAATCAAACAACATGCAGTTGCATGTCTTCTGCATCGTCTTCGTGATCCTCTTTGCTCTTATAGAATGCAATGAAAATTTCCTTGGTGCTTCTAGCAGCAGCGAGGTTAATGTGGTTGAGAATTTAAGGGTGAGAGGTGACTATGATCATGTGGAATATTATAGGCCCGAAGATGGAATCAAATTCTGCTCCAAAGAATGTACTCCATCTCTGCCTTGCTGGTGTTGCGATCGCCGTGGCCGTGCTTCTCAGTGCTTCCCAACTGAAAATGAATGTAAACATTACTGTGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006790 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016043 GO:0016226 GO:0016740 GO:0016782 GO:0016783 GO:0017076 GO:0022607 GO:0030554 GO:0031071 GO:0031163 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0051186 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 ko04122 map00730 map01100 map04122

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

101

Amino Acids

11.58

Weight (kDa)

5.26

Isoelectric Point (pI)

64.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65720 AT5G65720 AT5G65720
fragaria_vesca	FvH4_1g18610 FvH4_3g39110 FvH4_4g11530
malus_domestica	MD15G1303800.v1.1
prunus_persica	Prupe.6G213300_v2.0.a1
pyrus_communis	pycom02g15750 pycom02g15760 pycom12g09240 pycom14g03250 pycom15g26680
rosa_chinensis	RchiOBHm_Chr2g0109351 RchiOBHm_Chr2g0109391 RchiOBHm_Chr5g0045361
rosa_laevigata	RLG00000017733
rosa_multiflora	Rmu_sc0000332.1_g000011 Rmu_sc0001940.1_g000003 Rmu_sc0012764.1_g000010
rosa_roxburghii	Rroxscaffold_2G00134280
rosa_rugosa	Rorug02G0159500
rosa_samantha	Rh2AG211300 Rh2AG211600 Rh2BG221300 Rh2BG221400 Rh2BG221500 Rh2BG222000 Rh2CG213300 Rh2CG213900 Rh2DG217100 Rh2DG217400 Rh4BG181900 Rh5AG243200 Rh5BG312000 Rh5DG322600 Rh6CG498200 Rh7BG128000
rosa_wichuraiana	Rw5G028200 Rw5G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	52
AcoI	YGGCCR	1 cut(s)	250
AcsI	RAATTY	3 cut(s)	88, 133, 194
AfaI	GTAC	1 cut(s)	214
AfiI	CCNNNNNNNGG	1 cut(s)	185
AjuI	GAANNNNNNNTTGG	2 cut(s)	78, 110
AlwI	GGATC	1 cut(s)	52
AoxI	GGCC	2 cut(s)	176, 250
ApeKI	GCWGC	2 cut(s)	108, 111
ApoI	RAATTY	3 cut(s)	88, 133, 194
AsiSI	GCGATCGC	1 cut(s)	244
AspS9I	GGNCC	1 cut(s)	177
AsuHPI	GGTGA	2 cut(s)	154, 161
BbsI	GAAGAC	2 cut(s)	31, 43
BbvI	GCAGC	2 cut(s)	120, 123
BccI	CCATC	2 cut(s)	179, 226
BceAI	ACGGC	2 cut(s)	231, 237
BcgI	CGANNNNNNTGC	2 cut(s)	34, 68
BclI	TGATCA	1 cut(s)	157
BfaI	CTAG	1 cut(s)	105
BisI	GCNGC	2 cut(s)	109, 112
BlsI	GCNGC	2 cut(s)	110, 113
BmgT120I	GGNCC	1 cut(s)	177
BmsI	GCATC	1 cut(s)	54
BpiI	GAAGAC	2 cut(s)	31, 43
BsaJI	CCNNGG	2 cut(s)	94, 247
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse3DI	GCAATG	1 cut(s)	88
BseDI	CCNNGG	2 cut(s)	94, 247
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMI	GCAATG	1 cut(s)	88
BseMII	CTCAG	1 cut(s)	275
BseXI	GCAGC	2 cut(s)	120, 123
Bsh1285I	CGRYCG	2 cut(s)	9, 244
BshFI	GGCC	2 cut(s)	178, 252
BsiEI	CGRYCG	2 cut(s)	9, 244
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmI	GAATGC	1 cut(s)	83
BsnI	GGCC	2 cut(s)	178, 252
Bsp143I	GATC	3 cut(s)	57, 157, 241
BspANI	GGCC	2 cut(s)	178, 252
BspCNI	CTCAG	1 cut(s)	274
BspPI	GGATC	1 cut(s)	52
BsrDI	GCAATG	1 cut(s)	88
BssECI	CCNNGG	2 cut(s)	94, 247
BssMI	GATC	3 cut(s)	57, 157, 241
BssT1I	CCWWGG	1 cut(s)	94
Bst4CI	ACNGT	1 cut(s)	299
BstDEI	CTNAG	1 cut(s)	261
BstDSI	CCRYGG	1 cut(s)	247
BstKTI	GATC	3 cut(s)	60, 160, 244
BstMBI	GATC	3 cut(s)	57, 157, 241
BstMCI	CGRYCG	2 cut(s)	9, 244
BstMWI	GCNNNNNNNGC	1 cut(s)	237
BstNSI	RCATGY	2 cut(s)	28, 38
BstV1I	GCAGC	2 cut(s)	120, 123
BstV2I	GAAGAC	2 cut(s)	31, 43
BsuRI	GGCC	2 cut(s)	178, 252
BtgI	CCRYGG	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	269
Cfr13I	GGNCC	1 cut(s)	177
Csp6I	GTAC	1 cut(s)	213
CviAII	CATG	3 cut(s)	25, 35, 161
CviJI	RGCY	2 cut(s)	178, 252
CviKI_1	RGCY	2 cut(s)	178, 252
CviQI	GTAC	1 cut(s)	213
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	3 cut(s)	59, 159, 243
DpnII	GATC	3 cut(s)	57, 157, 241
EaeI	YGGCCR	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	3 cut(s)	28, 38, 164
FaiI	YATR	6 cut(s)	26, 36, 74, 156, 162, 174
FatI	CATG	3 cut(s)	24, 34, 160
FbaI	TGATCA	1 cut(s)	157
Fnu4HI	GCNGC	2 cut(s)	109, 112
Fsp4HI	GCNGC	2 cut(s)	109, 112
FspBI	CTAG	1 cut(s)	105
GluI	GCNGC	2 cut(s)	109, 112
HaeIII	GGCC	2 cut(s)	178, 252
Hin1II	CATG	3 cut(s)	28, 38, 164
HinfI	GANTC	1 cut(s)	189
HphI	GGTGA	2 cut(s)	154, 161
Hpy166II	GTNNAC	1 cut(s)	290
Hpy188III	TCNNGA	1 cut(s)	55
Hpy8I	GTNNAC	1 cut(s)	290
HpyCH4III	ACNGT	1 cut(s)	299
HpyCH4V	TGCA	4 cut(s)	28, 34, 45, 81
HpyF10VI	GCNNNNNNNGC	1 cut(s)	237
HpyF3I	CTNAG	1 cut(s)	261
Hsp92II	CATG	3 cut(s)	28, 38, 164
Ksp22I	TGATCA	1 cut(s)	157
Kzo9I	GATC	3 cut(s)	57, 157, 241
LmnI	GCTCC	1 cut(s)	206
LpnPI	CCDG	1 cut(s)	217
Lsp1109I	GCAGC	2 cut(s)	120, 123
LweI	GCATC	1 cut(s)	54
MaeI	CTAG	1 cut(s)	105
MaeIII	GTNAC	1 cut(s)	149
MalI	GATC	3 cut(s)	59, 159, 243
MboI	GATC	3 cut(s)	57, 157, 241
MboII	GAAGA	3 cut(s)	31, 43, 194
MluCI	AATT	3 cut(s)	88, 133, 194
MnlI	CCTC	3 cut(s)	71, 109, 140
MseI	TTAA	2 cut(s)	120, 137
MslI	CAYNNNNRTG	1 cut(s)	297
Mva1269I	GAATGC	1 cut(s)	83
MwoI	GCNNNNNNNGC	1 cut(s)	237
NdeII	GATC	3 cut(s)	57, 157, 241
NlaIII	CATG	3 cut(s)	28, 38, 164
NmuCI	GTSAC	1 cut(s)	149
NspI	RCATGY	2 cut(s)	28, 38
PcsI	WCGNNNNNNNCGW	1 cut(s)	250
PctI	GAATGC	1 cut(s)	83
PfeI	GAWTC	1 cut(s)	189
PkrI	GCNGC	2 cut(s)	110, 113
Ple19I	CGATCG	1 cut(s)	244
PspPI	GGNCC	1 cut(s)	177
PvuI	CGATCG	1 cut(s)	244
RgaI	GCGATCGC	1 cut(s)	244
RsaI	GTAC	1 cut(s)	214
RsaNI	GTAC	1 cut(s)	213
RseI	CAYNNNNRTG	1 cut(s)	297
SaqAI	TTAA	2 cut(s)	120, 137
SatI	GCNGC	2 cut(s)	109, 112
Sau3AI	GATC	3 cut(s)	57, 157, 241
Sau96I	GGNCC	1 cut(s)	177
SetI	ASST	2 cut(s)	120, 151
SfaAI	GCGATCGC	1 cut(s)	244
SfaNI	GCATC	1 cut(s)	54
SgfI	GCGATCGC	1 cut(s)	244
SmiMI	CAYNNNNRTG	1 cut(s)	297
Sse9I	AATT	3 cut(s)	88, 133, 194
SspI	AATATT	1 cut(s)	170
SspMI	CTAG	1 cut(s)	105
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	1 cut(s)	299
TaqII	GACCGA	1 cut(s)	23
TasI	AATT	3 cut(s)	88, 133, 194
TatI	WGTACW	1 cut(s)	212
TfiI	GAWTC	1 cut(s)	189
Tru1I	TTAA	2 cut(s)	120, 137
Tru9I	TTAA	2 cut(s)	120, 137
TscAI	CASTG	1 cut(s)	269
TseFI	GTSAC	1 cut(s)	149
TseI	GCWGC	2 cut(s)	108, 111
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	2 cut(s)	99, 297
TspRI	CASTG	1 cut(s)	269
XapI	RAATTY	3 cut(s)	88, 133, 194
XceI	RCATGY	2 cut(s)	28, 38
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.