Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002608

Physical Location & Seq

Genomic Coordinates Reverse (-)

12731533 .. 12732153

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g15750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGTCGCTTTCGGGGCACAAGGTTTACGGGCCAAAGGGGGTCGGGGCCTTGTACATGAGGAGGAGGCCAAGAATTCGGGTGGAGCCCCAAATGAATGGAGGTGGGCAGGAGAGAGGAATTCGAAGCGGAACAGTTCCTACGCCGTTGGTGGTAGGATTTGGTGCGGCCTGCGAAATTGCGAAGAAGGAAATGGAGTACGATGAGAAGAGGGTAAGAGAGTTGCAGGATCGGATGTTGAAGGGGATTAGGGAGAAGCTTGATATGGTTGTGGTGAATGGTAGCGAGGAGAGACGTTATCCCGGGAATTTGAATCTGTCGTTTGGTTATGTGGAAGGGGAGAGCTTGTTGATGGGGTTGAAGGAGGTGGCGGTGTCGAGTGGGAGTGCGTGCACCAGTGCGAGTTTGGAGCCGTCGTATGTGTTGAGGGCATTAGGGGTGGATGAGGACATGGCTCATACTTCAATTCGGTTTGGGATTGGGCGGTTCACCACGGAGGAGGAGATTGACAGGGCGGTTCAGCTGACAGTGCAGCAGGTGAAGAAGTTGAGGGAGTTGAGCCCGCTGTATGAGATGGTGAAAGAAGGGATCGATATCAAGAGTATTCAGTGGTCACAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006790 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016043 GO:0016226 GO:0016740 GO:0016782 GO:0016783 GO:0017076 GO:0022607 GO:0030554 GO:0031071 GO:0031163 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0051186 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 ko04122 map00730 map01100 map04122

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

207

Amino Acids

22.98

Weight (kDa)

8.49

Isoelectric Point (pI)

47.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_5	PF00266	2 - 170	1.5e-24	Aminotransferase class-V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65720 AT5G65720 AT5G65720
fragaria_vesca	FvH4_1g18610 FvH4_3g39110 FvH4_4g11530
malus_domestica	MD15G1303800.v1.1
prunus_persica	Prupe.6G213300_v2.0.a1
pyrus_communis	pycom02g15750 pycom02g15760 pycom12g09240 pycom14g03250 pycom15g26680
rosa_chinensis	RchiOBHm_Chr2g0109351 RchiOBHm_Chr2g0109391 RchiOBHm_Chr5g0045361
rosa_laevigata	RLG00000017733
rosa_multiflora	Rmu_sc0000332.1_g000011 Rmu_sc0001940.1_g000003 Rmu_sc0012764.1_g000010
rosa_roxburghii	Rroxscaffold_2G00134280
rosa_rugosa	Rorug02G0159500
rosa_samantha	Rh2AG211300 Rh2AG211600 Rh2BG221300 Rh2BG221400 Rh2BG221500 Rh2BG222000 Rh2CG213300 Rh2CG213900 Rh2DG217100 Rh2DG217400 Rh4BG181900 Rh5AG243200 Rh5BG312000 Rh5DG322600 Rh6CG498200 Rh7BG128000
rosa_wichuraiana	Rw5G028200 Rw5G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	523
Acc36I	ACCTGC	1 cut(s)	523
AciI	CCGC	6 cut(s)	126, 164, 368, 481, 512, 560
AclWI	GGATC	2 cut(s)	234, 593
AcsI	RAATTY	3 cut(s)	72, 117, 304
AfaI	GTAC	2 cut(s)	53, 197
AgsI	TTSAA	4 cut(s)	238, 310, 358, 462
AluBI	AGCT	3 cut(s)	256, 342, 520
AluI	AGCT	3 cut(s)	256, 342, 520
Alw21I	GWGCWC	1 cut(s)	392
Alw26I	GTCTC	1 cut(s)	283
Alw44I	GTGCAC	1 cut(s)	388
AlwI	GGATC	2 cut(s)	234, 593
Ama87I	CYCGRG	1 cut(s)	299
AoxI	GGCC	4 cut(s)	29, 45, 65, 165
ApaLI	GTGCAC	1 cut(s)	388
ApeKI	GCWGC	1 cut(s)	529
ApoI	RAATTY	3 cut(s)	72, 117, 304
AspS9I	GGNCC	2 cut(s)	29, 45
AsuC2I	CCSGG	2 cut(s)	300, 301
AsuHPI	GGTGA	4 cut(s)	283, 478, 547, 586
AsuII	TTCGAA	1 cut(s)	121
AvaI	CYCGRG	1 cut(s)	299
BaeGI	GKGCMC	2 cut(s)	18, 392
BanII	GRGCYC	2 cut(s)	87, 560
Bbv12I	GWGCWC	1 cut(s)	392
BbvI	GCAGC	1 cut(s)	541
BccI	CCATC	2 cut(s)	343, 565
BceAI	ACGGC	2 cut(s)	127, 394
BcnI	CCSGG	2 cut(s)	300, 301
BcoDI	GTCTC	1 cut(s)	283
BfuAI	ACCTGC	1 cut(s)	523
BisI	GCNGC	2 cut(s)	165, 530
BlsI	GCNGC	2 cut(s)	166, 531
Bme1390I	CCNGG	2 cut(s)	300, 301
BmeT110I	CYCGRG	1 cut(s)	299
BmgT120I	GGNCC	2 cut(s)	29, 45
BmiI	GGNNCC	3 cut(s)	46, 84, 408
BmrFI	CCNGG	2 cut(s)	300, 301
Bpu14I	TTCGAA	1 cut(s)	121
BpuMI	CCSGG	2 cut(s)	300, 301
Bsa29I	ATCGAT	1 cut(s)	588
BsaBI	GATNNNNATC	1 cut(s)	590
BsaJI	CCNNGG	2 cut(s)	299, 489
BsaXI	ACNNNNNCTCC	4 cut(s)	329, 359, 398, 428
Bse1I	ACTGG	1 cut(s)	393
Bse8I	GATNNNNATC	1 cut(s)	590
BseCI	ATCGAT	1 cut(s)	588
BseDI	CCNNGG	2 cut(s)	299, 489
BseGI	GGATG	2 cut(s)	237, 445
BseJI	GATNNNNATC	1 cut(s)	590
BseNI	ACTGG	1 cut(s)	393
BseRI	GAGGAG	5 cut(s)	73, 76, 299, 509, 512
BseSI	GKGCMC	2 cut(s)	18, 392
BseXI	GCAGC	1 cut(s)	541
BsgI	GTGCAG	1 cut(s)	548
BshFI	GGCC	4 cut(s)	31, 47, 67, 167
BshVI	ATCGAT	1 cut(s)	588
BsiHKAI	GWGCWC	1 cut(s)	392
BsiHKCI	CYCGRG	1 cut(s)	299
BsiSI	CCGG	1 cut(s)	300
BsmAI	GTCTC	1 cut(s)	283
BsmBI	CGTCTC	1 cut(s)	283
BsnI	GGCC	4 cut(s)	31, 47, 67, 167
BsoBI	CYCGRG	1 cut(s)	299
Bsp119I	TTCGAA	1 cut(s)	121
Bsp1286I	GDGCHC	4 cut(s)	18, 87, 392, 560
Bsp1407I	TGTACA	1 cut(s)	51
Bsp143I	GATC	2 cut(s)	226, 585
BspACI	CCGC	6 cut(s)	126, 164, 368, 481, 512, 560
BspANI	GGCC	4 cut(s)	31, 47, 67, 167
BspDI	ATCGAT	1 cut(s)	588
BspLI	GGNNCC	3 cut(s)	46, 84, 408
BspMI	ACCTGC	1 cut(s)	523
BspPI	GGATC	2 cut(s)	234, 593
BspT104I	TTCGAA	1 cut(s)	121
BsrGI	TGTACA	1 cut(s)	51
BsrI	ACTGG	1 cut(s)	393
BssECI	CCNNGG	2 cut(s)	299, 489
BssMI	GATC	2 cut(s)	226, 585
Bst4CI	ACNGT	2 cut(s)	133, 526
Bst6I	CTCTTC	1 cut(s)	200
BstAUI	TGTACA	1 cut(s)	51
BstBI	TTCGAA	1 cut(s)	121
BstC8I	GCNNGC	3 cut(s)	169, 388, 560
BstDSI	CCRYGG	1 cut(s)	489
BstF5I	GGATG	2 cut(s)	237, 445
BstKTI	GATC	2 cut(s)	229, 588
BstMAI	GTCTC	1 cut(s)	283
BstMBI	GATC	2 cut(s)	226, 585
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 526
BstSCI	CCNGG	2 cut(s)	298, 299
BstSLI	GKGCMC	2 cut(s)	18, 392
BstV1I	GCAGC	1 cut(s)	541
BstXI	CCANNNNNNTGG	1 cut(s)	95
Bsu15I	ATCGAT	1 cut(s)	588
BsuRI	GGCC	4 cut(s)	31, 47, 67, 167
BsuTUI	ATCGAT	1 cut(s)	588
BtgI	CCRYGG	1 cut(s)	489
BtsCI	GGATG	2 cut(s)	237, 445
BtsIMutI	CAGTG	3 cut(s)	400, 531, 611
BveI	ACCTGC	1 cut(s)	523
Cac8I	GCNNGC	3 cut(s)	169, 388, 560
Cfr13I	GGNCC	2 cut(s)	29, 45
Cfr9I	CCCGGG	1 cut(s)	299
ClaI	ATCGAT	1 cut(s)	588
Csp6I	GTAC	2 cut(s)	52, 196
CviAII	CATG	2 cut(s)	55, 448
CviQI	GTAC	2 cut(s)	52, 196
DpnI	GATC	2 cut(s)	228, 587
DpnII	GATC	2 cut(s)	226, 585
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
Eco24I	GRGCYC	2 cut(s)	87, 560
Eco32I	GATATC	1 cut(s)	592
Eco88I	CYCGRG	1 cut(s)	299
EcoO109I	RGGNCCY	1 cut(s)	45
EcoRI	GAATTC	2 cut(s)	72, 117
EcoRV	GATATC	1 cut(s)	592
EcoT38I	GRGCYC	2 cut(s)	87, 560
Esp3I	CGTCTC	1 cut(s)	283
FaeI	CATG	2 cut(s)	58, 451
FaiI	YATR	7 cut(s)	56, 263, 327, 417, 449, 456, 567
FatI	CATG	2 cut(s)	54, 447
FauI	CCCGC	1 cut(s)	567
Fnu4HI	GCNGC	2 cut(s)	165, 530
FokI	GGATG	2 cut(s)	244, 452
FriOI	GRGCYC	2 cut(s)	87, 560
Fsp4HI	GCNGC	2 cut(s)	165, 530
GluI	GCNGC	2 cut(s)	165, 530
HaeIII	GGCC	4 cut(s)	31, 47, 67, 167
HapII	CCGG	1 cut(s)	300
Hin1II	CATG	2 cut(s)	58, 451
HindIII	AAGCTT	1 cut(s)	254
HinfI	GANTC	1 cut(s)	310
HpaII	CCGG	1 cut(s)	300
HphI	GGTGA	4 cut(s)	283, 478, 547, 586
Hpy166II	GTNNAC	3 cut(s)	25, 390, 486
Hpy188I	TCNGA	1 cut(s)	231
Hpy188III	TCNNGA	1 cut(s)	595
Hpy8I	GTNNAC	3 cut(s)	25, 390, 486
Hpy99I	CGWCG	1 cut(s)	415
HpyAV	CCTTC	5 cut(s)	178, 232, 326, 352, 575
HpyCH4III	ACNGT	2 cut(s)	133, 526
HpyCH4IV	ACGT	1 cut(s)	292
HpyCH4V	TGCA	3 cut(s)	223, 390, 529
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 526
HpySE526I	ACGT	1 cut(s)	292
Hsp92II	CATG	2 cut(s)	58, 451
Kzo9I	GATC	2 cut(s)	226, 585
LmnI	GCTCC	2 cut(s)	82, 406
LpnPI	CCDG	7 cut(s)	92, 181, 209, 313, 406, 493, 518
Lsp1109I	GCAGC	1 cut(s)	541
MaeII	ACGT	1 cut(s)	292
MaeIII	GTNAC	1 cut(s)	609
MalI	GATC	2 cut(s)	228, 587
MboI	GATC	2 cut(s)	226, 585
MboII	GAAGA	3 cut(s)	193, 217, 550
MhlI	GDGCHC	4 cut(s)	18, 87, 392, 560
MluCI	AATT	5 cut(s)	72, 117, 174, 304, 462
MspA1I	CMGCKG	2 cut(s)	520, 562
MspI	CCGG	1 cut(s)	300
MspR9I	CCNGG	2 cut(s)	300, 301
MwoI	GCNNNNNNNGC	2 cut(s)	13, 526
NciI	CCSGG	2 cut(s)	300, 301
NdeII	GATC	2 cut(s)	226, 585
NlaIII	CATG	2 cut(s)	58, 451
NlaIV	GGNNCC	3 cut(s)	46, 84, 408
NmuCI	GTSAC	1 cut(s)	609
NspV	TTCGAA	1 cut(s)	121
PaqCI	CACCTGC	1 cut(s)	523
PfeI	GAWTC	1 cut(s)	310
PkrI	GCNGC	2 cut(s)	166, 531
PspN4I	GGNNCC	3 cut(s)	46, 84, 408
PspPI	GGNCC	2 cut(s)	29, 45
PsrI	GAACNNNNNNTAC	2 cut(s)	121, 153
PvuII	CAGCTG	1 cut(s)	520
RsaI	GTAC	2 cut(s)	53, 197
RsaNI	GTAC	2 cut(s)	52, 196
SatI	GCNGC	2 cut(s)	165, 530
Sau3AI	GATC	2 cut(s)	226, 585
Sau96I	GGNCC	2 cut(s)	29, 45
ScrFI	CCNGG	2 cut(s)	300, 301
SduI	GDGCHC	4 cut(s)	18, 87, 392, 560
SetI	ASST	8 cut(s)	24, 103, 258, 295, 344, 366, 522, 537
SfuI	TTCGAA	1 cut(s)	121
SmaI	CCCGGG	1 cut(s)	301
Sse9I	AATT	5 cut(s)	72, 117, 174, 304, 462
SsiI	CCGC	6 cut(s)	126, 164, 368, 481, 512, 560
StyD4I	CCNGG	2 cut(s)	298, 299
TaaI	ACNGT	2 cut(s)	133, 526
TaiI	ACGT	1 cut(s)	295
TaqI	TCGA	3 cut(s)	121, 374, 588
TasI	AATT	5 cut(s)	72, 117, 174, 304, 462
TatI	WGTACW	1 cut(s)	51
TauI	GCSGC	1 cut(s)	167
TfiI	GAWTC	1 cut(s)	310
TscAI	CASTG	3 cut(s)	400, 531, 611
TseFI	GTSAC	1 cut(s)	609
TseI	GCWGC	1 cut(s)	529
Tsp45I	GTSAC	1 cut(s)	609
TspDTI	ATGAA	1 cut(s)	107
TspGWI	ACGGA	1 cut(s)	506
TspMI	CCCGGG	1 cut(s)	299
TspRI	CASTG	3 cut(s)	400, 531, 611
VneI	GTGCAC	1 cut(s)	388
XapI	RAATTY	3 cut(s)	72, 117, 304
XcmI	CCANNNNNNNNNTGG	1 cut(s)	400
XmaI	CCCGGG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.