Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002608

Physical Location & Seq

Genomic Coordinates Reverse (-)

9464682 .. 9465158

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG128000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCAATGAACAATGAAATCGGTGTGATTCAACCTATGGAGGAAATCGGAGATATCTGCAAGGAGTTCAAGATTCCGTTTCACACTGATGTTGCTCAAGCGTTAGGGAAGATTCCGATTGATATGGATAGGTGGAATGTGAGCTTGATGTCGTTGAGTGGGCACAAGGTGTATGGGCCTAAGGGAGTTGGGGCATTGTACATGAGGCGGCAGACGAGGATTCGGGTGGAGCCTCAGATGAATGGAGGTGGGCAGGAGAAGGGGATAAGGAGCGGGACGGTTCCGACGCCGTTGGTTGTGGGGATGGGGACTGCTTGCGAGATTGCAAAGAAGGAGATGGAGTATGATCAGAAGAGGATTAGTCAGCTGCAGGAGAGGATGCTGAGTGGGATTAGGGAGCAGCTGGATGAGGTGGTGGTGAATGGCAGTATCGAGAGAAGGTACCCGGAGAGGATCCCATGTTCTTGCTGGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006790 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016043 GO:0016226 GO:0016740 GO:0016782 GO:0016783 GO:0017076 GO:0022607 GO:0030554 GO:0031071 GO:0031163 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0051186 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 ko04122 map00730 map01100 map04122

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

158

Amino Acids

17.78

Weight (kDa)

7.62

Isoelectric Point (pI)

54.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_5	PF00266	1 - 150	3.2e-31	Aminotransferase class-V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65720 AT5G65720 AT5G65720
fragaria_vesca	FvH4_1g18610 FvH4_3g39110 FvH4_4g11530
malus_domestica	MD15G1303800.v1.1
prunus_persica	Prupe.6G213300_v2.0.a1
pyrus_communis	pycom02g15750 pycom02g15760 pycom12g09240 pycom14g03250 pycom15g26680
rosa_chinensis	RchiOBHm_Chr2g0109351 RchiOBHm_Chr2g0109391 RchiOBHm_Chr5g0045361
rosa_laevigata	RLG00000017733
rosa_multiflora	Rmu_sc0000332.1_g000011 Rmu_sc0001940.1_g000003 Rmu_sc0012764.1_g000010
rosa_roxburghii	Rroxscaffold_2G00134280
rosa_rugosa	Rorug02G0159500
rosa_samantha	Rh2AG211300 Rh2AG211600 Rh2BG221300 Rh2BG221400 Rh2BG221500 Rh2BG222000 Rh2CG213300 Rh2CG213900 Rh2DG217100 Rh2DG217400 Rh4BG181900 Rh5AG243200 Rh5BG312000 Rh5DG322600 Rh6CG498200 Rh7BG128000
rosa_wichuraiana	Rw5G028200 Rw5G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	441
AccB1I	GGYRCC	1 cut(s)	441
AccBSI	CCGCTC	1 cut(s)	273
AciI	CCGC	2 cut(s)	208, 273
AclWI	GGATC	2 cut(s)	448, 461
AcyI	GRCGYC	1 cut(s)	287
AdeI	CACNNNGTG	1 cut(s)	169
AfaI	GTAC	2 cut(s)	200, 443
AgsI	TTSAA	2 cut(s)	32, 70
AloI	GAACNNNNNNTCC	2 cut(s)	445, 477
AluBI	AGCT	3 cut(s)	144, 367, 403
AluI	AGCT	3 cut(s)	144, 367, 403
AlwI	GGATC	2 cut(s)	448, 461
AoxI	GGCC	1 cut(s)	176
ApeKI	GCWGC	2 cut(s)	367, 400
Asp718I	GGTACC	1 cut(s)	441
AspS9I	GGNCC	1 cut(s)	176
AsuC2I	CCSGG	1 cut(s)	446
AsuHPI	GGTGA	1 cut(s)	430
AxyI	CCTNAGG	1 cut(s)	180
BaeGI	GKGCMC	1 cut(s)	165
BamHI	GGATCC	1 cut(s)	453
BanI	GGYRCC	1 cut(s)	441
BbvI	GCAGC	2 cut(s)	354, 412
BccI	CCATC	2 cut(s)	298, 331
BceAI	ACGGC	1 cut(s)	274
BclI	TGATCA	1 cut(s)	346
BcnI	CCSGG	1 cut(s)	446
BfmI	CTRYAG	1 cut(s)	368
BisI	GCNGC	3 cut(s)	209, 368, 401
BlsI	GCNGC	3 cut(s)	210, 369, 402
Bme1390I	CCNGG	1 cut(s)	446
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	4 cut(s)	231, 282, 443, 455
BmrFI	CCNGG	1 cut(s)	446
BmsI	GCATC	1 cut(s)	369
BpuEI	CTTGAG	1 cut(s)	81
BpuMI	CCSGG	1 cut(s)	446
BsaHI	GRCGYC	1 cut(s)	287
BsaXI	ACNNNNNCTCC	2 cut(s)	326, 356
Bse21I	CCTNAGG	1 cut(s)	180
Bse3DI	GCAATG	1 cut(s)	12
BseGI	GGATG	3 cut(s)	309, 384, 412
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	2 cut(s)	248, 374
BseSI	GKGCMC	1 cut(s)	165
BseXI	GCAGC	2 cut(s)	354, 412
BshFI	GGCC	1 cut(s)	178
BshNI	GGYRCC	1 cut(s)	441
BsiSI	CCGG	1 cut(s)	446
BslFI	GGGAC	2 cut(s)	289, 322
BsmFI	GGGAC	2 cut(s)	289, 322
BsnI	GGCC	1 cut(s)	178
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp1407I	TGTACA	1 cut(s)	198
Bsp143I	GATC	2 cut(s)	346, 453
BspACI	CCGC	2 cut(s)	208, 273
BspANI	GGCC	1 cut(s)	178
BspCNI	CTCAG	2 cut(s)	247, 375
BspLI	GGNNCC	4 cut(s)	231, 282, 443, 455
BspMAI	CTGCAG	1 cut(s)	372
BspPI	GGATC	2 cut(s)	448, 461
BspT107I	GGYRCC	1 cut(s)	441
BsrBI	CCGCTC	1 cut(s)	273
BsrDI	GCAATG	1 cut(s)	12
BsrGI	TGTACA	1 cut(s)	198
BssMI	GATC	2 cut(s)	346, 453
BssNI	GRCGYC	1 cut(s)	287
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	1 cut(s)	347
BstACI	GRCGYC	1 cut(s)	287
BstAUI	TGTACA	1 cut(s)	198
BstC8I	GCNNGC	1 cut(s)	316
BstDEI	CTNAG	3 cut(s)	180, 234, 383
BstF5I	GGATG	3 cut(s)	309, 384, 412
BstKTI	GATC	2 cut(s)	349, 456
BstMBI	GATC	2 cut(s)	346, 453
BstSCI	CCNGG	1 cut(s)	444
BstSFI	CTRYAG	1 cut(s)	368
BstSLI	GKGCMC	1 cut(s)	165
BstV1I	GCAGC	2 cut(s)	354, 412
BstX2I	RGATCY	1 cut(s)	453
BstYI	RGATCY	1 cut(s)	453
Bsu36I	CCTNAGG	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	178
BtsCI	GGATG	3 cut(s)	309, 384, 412
BtsIMutI	CAGTG	1 cut(s)	84
Cac8I	GCNNGC	1 cut(s)	316
Cfr13I	GGNCC	1 cut(s)	176
CseI	GACGC	1 cut(s)	295
Csp6I	GTAC	2 cut(s)	199, 442
CviAII	CATG	2 cut(s)	202, 459
CviJI	RGCY	5 cut(s)	144, 178, 232, 367, 403
CviKI_1	RGCY	5 cut(s)	144, 178, 232, 367, 403
CviQI	GTAC	2 cut(s)	199, 442
DdeI	CTNAG	3 cut(s)	180, 234, 383
DpnI	GATC	2 cut(s)	348, 455
DpnII	GATC	2 cut(s)	346, 453
DraIII	CACNNNGTG	1 cut(s)	169
Eam1104I	CTCTTC	1 cut(s)	347
EarI	CTCTTC	1 cut(s)	347
Eco32I	GATATC	1 cut(s)	55
Eco81I	CCTNAGG	1 cut(s)	180
EcoRV	GATATC	1 cut(s)	55
FaeI	CATG	2 cut(s)	205, 462
FaiI	YATR	6 cut(s)	38, 125, 174, 203, 345, 460
FaqI	GGGAC	2 cut(s)	289, 322
FatI	CATG	2 cut(s)	201, 458
FauI	CCCGC	1 cut(s)	266
FbaI	TGATCA	1 cut(s)	346
Fnu4HI	GCNGC	3 cut(s)	209, 368, 401
FokI	GGATG	3 cut(s)	316, 391, 419
Fsp4HI	GCNGC	3 cut(s)	209, 368, 401
GluI	GCNGC	3 cut(s)	209, 368, 401
HaeIII	GGCC	1 cut(s)	178
HapII	CCGG	1 cut(s)	446
HgaI	GACGC	1 cut(s)	295
Hin1I	GRCGYC	1 cut(s)	287
Hin1II	CATG	2 cut(s)	205, 462
HinfI	GANTC	4 cut(s)	28, 73, 112, 220
HpaII	CCGG	1 cut(s)	446
HphI	GGTGA	1 cut(s)	430
Hpy188I	TCNGA	5 cut(s)	50, 117, 237, 285, 351
Hpy188III	TCNNGA	2 cut(s)	70, 433
Hpy99I	CGWCG	1 cut(s)	289
HpyAV	CCTTC	3 cut(s)	253, 325, 432
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4V	TGCA	3 cut(s)	60, 326, 370
HpyF3I	CTNAG	3 cut(s)	180, 234, 383
Hsp92I	GRCGYC	1 cut(s)	287
Hsp92II	CATG	2 cut(s)	205, 462
KpnI	GGTACC	1 cut(s)	445
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	2 cut(s)	346, 453
LmnI	GCTCC	3 cut(s)	229, 270, 397
LpnPI	CCDG	5 cut(s)	239, 356, 389, 454, 459
Lsp1109I	GCAGC	2 cut(s)	354, 412
LweI	GCATC	1 cut(s)	369
MalI	GATC	2 cut(s)	348, 455
MbiI	CCGCTC	1 cut(s)	273
MboI	GATC	2 cut(s)	346, 453
MboII	GAAGA	2 cut(s)	121, 364
MflI	RGATCY	1 cut(s)	453
MhlI	GDGCHC	1 cut(s)	165
MmeI	TCCRAC	1 cut(s)	308
MnlI	CCTC	9 cut(s)	34, 198, 210, 239, 243, 348, 369, 403, 444
MslI	CAYNNNNRTG	1 cut(s)	87
MspA1I	CMGCKG	2 cut(s)	367, 403
MspI	CCGG	1 cut(s)	446
MspR9I	CCNGG	1 cut(s)	446
NciI	CCSGG	1 cut(s)	446
NdeII	GATC	2 cut(s)	346, 453
NlaIII	CATG	2 cut(s)	205, 462
NlaIV	GGNNCC	4 cut(s)	231, 282, 443, 455
PfeI	GAWTC	4 cut(s)	28, 73, 112, 220
PkrI	GCNGC	3 cut(s)	210, 369, 402
PspN4I	GGNNCC	4 cut(s)	231, 282, 443, 455
PspPI	GGNCC	1 cut(s)	176
PstI	CTGCAG	1 cut(s)	372
PsuI	RGATCY	1 cut(s)	453
PvuII	CAGCTG	2 cut(s)	367, 403
RsaI	GTAC	2 cut(s)	200, 443
RsaNI	GTAC	2 cut(s)	199, 442
RseI	CAYNNNNRTG	1 cut(s)	87
SatI	GCNGC	3 cut(s)	209, 368, 401
Sau3AI	GATC	2 cut(s)	346, 453
Sau96I	GGNCC	1 cut(s)	176
ScrFI	CCNGG	1 cut(s)	446
SduI	GDGCHC	1 cut(s)	165
SetI	ASST	9 cut(s)	37, 134, 146, 171, 250, 369, 405, 414, 443
SfaNI	GCATC	1 cut(s)	369
SfcI	CTRYAG	1 cut(s)	368
SmiMI	CAYNNNNRTG	1 cut(s)	87
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
SsiI	CCGC	2 cut(s)	208, 273
StyD4I	CCNGG	1 cut(s)	444
TaaI	ACNGT	1 cut(s)	280
TaqI	TCGA	1 cut(s)	432
TatI	WGTACW	1 cut(s)	198
TauI	GCSGC	1 cut(s)	211
TfiI	GAWTC	4 cut(s)	28, 73, 112, 220
TscAI	CASTG	1 cut(s)	91
TseI	GCWGC	2 cut(s)	367, 400
TspDTI	ATGAA	3 cut(s)	23, 30, 254
TspGWI	ACGGA	1 cut(s)	66
TspRI	CASTG	1 cut(s)	91
XcmI	CCANNNNNNNNNTGG	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.