FvH4_1g13470

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0003684
Physical Location & Seq
Reverse (-)
7399367 .. 7402979
3613 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g13470.t2

Sequence Viewer

Length: 1548 bp
ATGGCTGATGCGGATTCGGATTCTGACAGTAGCTTTGTCCTTCTGAGTGAAGGCACTTCTGTGGGTAGTGATTCTGAGAGTTTTGTCATTGTGAGTGAAGACTGTGTGAGTACTGATTCTGGTGAAGATCTATTTGGGGAAAGCCAAAATGAGTTGGAGAAGGTTGTAAATGATGTTAAGAGTTGTGATTCTGAAGATGATCAATTTTGTGATAGCCAGCAGCAGTTGGAGAAGAGTGAAGATGATAACAGTAGTGTGAGTACTGACTCTGATGAAGTTCTGTTTGGTGAAAGCAGACACCAATTGAAGAAGCTTGTGGATTATTCTAGTTCTGAGTCTGTAGAAGTTCTATTGGATTGTAGTGGATCACTGGGGAATAGAAAATATGTGGCTACCAATGAGTTTCACAGGTATCCATGTAAAAGAATTGGCCATGTTTGTGGAGATGATTGCTATGAATTTTCTGGAGAGAAGAAGGCCAGTGAGAATATTGACATCAATGATGTGACAATGGAGTATGTTCTTCCTTTCCTCCCTGCCAAAACACTTTGCAGGTTCAGAAGCGTTGGCAAACAGTGGGATAAGTGGATTTCCACCCCATTCTTCATTCACAAGCAGGCTCACTCCTTCCGGGATATCTCTGGTTTTTTCAGTCAACTTCCTGGGGAAAAGCCTTCTTTTGTCTCACTCAACAGAGATGCATATGGCATTCCTAATCCTTCCCTTGATTTCTTGCCTGAATCAATTACTGTAAGGACTACTTGTAATGGCCTGCTCTGCTGTGAAAGCTGCGATGGAGAAAATACTTACTACATTTGCAATCCTGTGAACAAGCAATGGACAGTGCTTCCCAAAAATTATGAACCTGAATCAGGGACATCAGTGCTCACCAAGATCTATCATGGACCTGAATCAGTCCTTGCACTAGCTTTTGAGACCTCTGTGCTTGAATTTGCAGAACATTTTCAACTTGTGTGTGCCTTCTCTTTACCTGATCAGCCGGTGATCTGTTTTGATATATACTCTTCAAGGTCGCGCTATTGGAAACGCTCAAAGACAGAATGCTGTGAGATTGATGCTCTGCATTTGACAGGTCATGGGCTCTTTCTGAAGGGAATGGTCTTCTGGGAAACTCTTGCTGGCACAATTTTGGCTTTTAATCTGAAGGAGGAGCAATACGGTATTTTGCCGCTCCCTTGCCGCAGTGGACCACACGGTGTTATGGCAGTGATGTATGGCGAGCTGTGTTATATTCTGCCTGTTCTGGAAGACTCTGTATACACATTAAAGATCTATGGTGATATGGACATGAAACTGAAGCACATAATTCGACTTGCGGATGGTATTTTCACCAATTATGATGAAGAGTTGAGGGCTTTGGCTTGTGTGAATGATGATGTGGTGATCGTGCTTCTTGGAATGAAATTGATTGCTTATCATGTGAAAGCAGAGAAGGCTGATATCATACAGAGTTATATTGGGACTAGTGCTGGATATGCGGGTTATCTTCCATATGTGAACAGCCTGGTACAAGTCAATCACCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

516

Amino Acids

57.57

Weight (kDa)

4.63

Isoelectric Point (pI)

42.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 249 - 430 2.7e-09 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 543
AccBSI CCGCTC 1 cut(s) 1192
AccI GTMKAC 1 cut(s) 1278
AccII CGCG 1 cut(s) 1036
AciI CCGC 5 cut(s) 11, 1190, 1201, 1337, 1499
AclWI GGATC 1 cut(s) 373
AcoI YGGCCR 1 cut(s) 430
AcsI RAATTY 2 cut(s) 458, 950
AcuI CTGAAG 4 cut(s) 213, 1130, 1184, 1337
AdeI CACNNNGTG 1 cut(s) 1217
AfaI GTAC 3 cut(s) 112, 262, 1530
AfiI CCNNNNNNNGG 1 cut(s) 872
AgsI TTSAA 4 cut(s) 307, 950, 968, 1029
AhlI ACTAGT 1 cut(s) 1484
AjnI CCWGG 2 cut(s) 661, 1524
AjuI GAANNNNNNNTTGG 4 cut(s) 117, 149, 267, 299
AleI CACNNNNGTG 1 cut(s) 59
AluBI AGCT 5 cut(s) 33, 313, 789, 929, 1243
AluI AGCT 5 cut(s) 33, 313, 789, 929, 1243
Alw21I GWGCWC 1 cut(s) 888
Alw26I GTCTC 2 cut(s) 688, 929
AlwI GGATC 1 cut(s) 373
AoxI GGCC 3 cut(s) 430, 477, 769
ApeKI GCWGC 2 cut(s) 220, 789
ApoI RAATTY 2 cut(s) 458, 950
ArsI GACNNNNNNTTYG 2 cut(s) 17, 49
Asp700I GAANNNNTTC 1 cut(s) 963
AspLEI GCGC 1 cut(s) 1038
AspS9I GGNCC 2 cut(s) 905, 1208
AsuC2I CCSGG 1 cut(s) 632
AsuHPI GGTGA 8 cut(s) 134, 299, 880, 1015, 1310, 1342, 1414, 1532
AvaII GGWCC 2 cut(s) 905, 1208
BalI TGGCCA 1 cut(s) 432
BanII GRGCYC 1 cut(s) 1104
BbsI GAAGAC 3 cut(s) 105, 1114, 1275
Bbv12I GWGCWC 1 cut(s) 888
BbvI GCAGC 2 cut(s) 232, 776
BccI CCATC 2 cut(s) 788, 1334
BcgI CGANNNNNNTGC 2 cut(s) 1310, 1344
BciT130I CCWGG 2 cut(s) 663, 1526
BciVI GTATCC 1 cut(s) 423
BclI TGATCA 2 cut(s) 199, 994
BcnI CCSGG 1 cut(s) 632
BcoDI GTCTC 2 cut(s) 688, 929
BcuI ACTAGT 1 cut(s) 1484
BfaI CTAG 3 cut(s) 327, 926, 1485
BfmI CTRYAG 1 cut(s) 339
BfuAI ACCTGC 1 cut(s) 543
BfuI GTATCC 1 cut(s) 423
BglII AGATCT 3 cut(s) 127, 894, 1290
BisI GCNGC 4 cut(s) 221, 790, 1190, 1201
BlsI GCNGC 4 cut(s) 222, 791, 1191, 1202
BmcAI AGTACT 2 cut(s) 112, 262
Bme1390I CCNGG 3 cut(s) 632, 663, 1526
Bme18I GGWCC 2 cut(s) 905, 1208
BmgT120I GGNCC 2 cut(s) 905, 1208
BmrFI CCNGG 3 cut(s) 632, 663, 1526
BmrI ACTGGG 1 cut(s) 380
BmsI GCATC 2 cut(s) 688, 1066
BmuI ACTGGG 1 cut(s) 380
BpiI GAAGAC 3 cut(s) 105, 1114, 1275
BpmI CTGGAG 1 cut(s) 486
BpuMI CCSGG 1 cut(s) 632
BsaI GGTCTC 1 cut(s) 929
BsaJI CCNNGG 1 cut(s) 662
Bsc4I CCNNNNNNNGG 1 cut(s) 872
Bse118I RCCGGY 1 cut(s) 1000
Bse1I ACTGG 2 cut(s) 375, 480
Bse3DI GCAATG 1 cut(s) 842
BseBI CCWGG 2 cut(s) 663, 1526
BseDI CCNNGG 1 cut(s) 662
BseGI GGATG 1 cut(s) 1345
BseLI CCNNNNNNNGG 1 cut(s) 872
BseMI GCAATG 1 cut(s) 842
BseMII CTCAG 3 cut(s) 35, 66, 324
BseNI ACTGG 2 cut(s) 375, 480
BseRI GAGGAG 1 cut(s) 1184
BseXI GCAGC 2 cut(s) 232, 776
Bsh1236I CGCG 1 cut(s) 1036
BshFI GGCC 3 cut(s) 432, 479, 771
BsiHKAI GWGCWC 1 cut(s) 888
BsiSI CCGG 2 cut(s) 631, 1001
BslFI GGGAC 2 cut(s) 889, 1495
BslI CCNNNNNNNGG 1 cut(s) 872
BsmAI GTCTC 2 cut(s) 688, 929
BsmFI GGGAC 2 cut(s) 889, 1495
BsmI GAATGC 2 cut(s) 708, 1067
BsnI GGCC 3 cut(s) 432, 479, 771
Bso31I GGTCTC 1 cut(s) 929
Bsp1286I GDGCHC 2 cut(s) 888, 1104
Bsp143I GATC 8 cut(s) 127, 199, 365, 894, 994, 1005, 1290, 1404
BspACI CCGC 5 cut(s) 11, 1190, 1201, 1337, 1499
BspANI GGCC 3 cut(s) 432, 479, 771
BspCNI CTCAG 3 cut(s) 36, 67, 325
BspFNI CGCG 1 cut(s) 1036
BspMI ACCTGC 1 cut(s) 543
BspPI GGATC 1 cut(s) 373
BspTNI GGTCTC 1 cut(s) 929
BsrBI CCGCTC 1 cut(s) 1192
BsrDI GCAATG 1 cut(s) 842
BsrFI RCCGGY 1 cut(s) 1000
BsrI ACTGG 2 cut(s) 375, 480
BssAI RCCGGY 1 cut(s) 1000
BssECI CCNNGG 1 cut(s) 662
BssMI GATC 8 cut(s) 127, 199, 365, 894, 994, 1005, 1290, 1404
BssNAI GTATAC 1 cut(s) 1279
Bst1107I GTATAC 1 cut(s) 1279
Bst2UI CCWGG 2 cut(s) 663, 1526
Bst4CI ACNGT 8 cut(s) 29, 104, 251, 576, 751, 844, 1181, 1217
Bst6I CTCTTC 3 cut(s) 227, 1030, 1359
BstC8I GCNNGC 5 cut(s) 218, 618, 773, 1141, 1241
BstDEI CTNAG 3 cut(s) 44, 75, 333
BstENI CCTNNNNNAGG 1 cut(s) 870
BstF5I GGATG 1 cut(s) 1345
BstFNI CGCG 1 cut(s) 1036
BstHHI GCGC 1 cut(s) 1038
BstKTI GATC 8 cut(s) 130, 202, 368, 897, 997, 1008, 1293, 1407
BstMAI GTCTC 2 cut(s) 688, 929
BstMBI GATC 8 cut(s) 127, 199, 365, 894, 994, 1005, 1290, 1404
BstMWI GCNNNNNNNGC 4 cut(s) 777, 786, 1454, 1496
BstNI CCWGG 2 cut(s) 663, 1526
BstSCI CCNGG 3 cut(s) 630, 661, 1524
BstSFI CTRYAG 1 cut(s) 339
BstUI CGCG 1 cut(s) 1036
BstV1I GCAGC 2 cut(s) 232, 776
BstV2I GAAGAC 3 cut(s) 105, 1114, 1275
BstX2I RGATCY 3 cut(s) 127, 894, 1290
BstXI CCANNNNNNTGG 1 cut(s) 440
BstYI RGATCY 3 cut(s) 127, 894, 1290
BstZ17I GTATAC 1 cut(s) 1279
BsuI GTATCC 1 cut(s) 423
BsuRI GGCC 3 cut(s) 432, 479, 771
BtgZI GCGATG 1 cut(s) 807
BtsCI GGATG 1 cut(s) 1345
BtsI GCAGTG 2 cut(s) 1210, 1233
BtsIMutI CAGTG 7 cut(s) 368, 487, 581, 849, 888, 1210, 1233
BveI ACCTGC 1 cut(s) 543
Cac8I GCNNGC 5 cut(s) 218, 618, 773, 1141, 1241
CfoI GCGC 1 cut(s) 1038
Cfr10I RCCGGY 1 cut(s) 1000
Cfr13I GGNCC 2 cut(s) 905, 1208
Csp6I GTAC 3 cut(s) 111, 261, 1529
CviAII CATG 7 cut(s) 417, 434, 902, 1097, 1309, 1439, 1545
CviQI GTAC 3 cut(s) 111, 261, 1529
DdeI CTNAG 3 cut(s) 44, 75, 333
DpnI GATC 8 cut(s) 129, 201, 367, 896, 996, 1007, 1292, 1406
DpnII GATC 8 cut(s) 127, 199, 365, 894, 994, 1005, 1290, 1404
DraIII CACNNNGTG 1 cut(s) 1217
EaeI YGGCCR 1 cut(s) 430
Eam1104I CTCTTC 3 cut(s) 227, 1030, 1359
EarI CTCTTC 3 cut(s) 227, 1030, 1359
Eco24I GRGCYC 1 cut(s) 1104
Eco31I GGTCTC 1 cut(s) 929
Eco32I GATATC 2 cut(s) 637, 1462
Eco47I GGWCC 2 cut(s) 905, 1208
Eco57I CTGAAG 4 cut(s) 213, 1130, 1184, 1337
EcoNI CCTNNNNNAGG 1 cut(s) 870
EcoRII CCWGG 2 cut(s) 661, 1524
EcoRV GATATC 2 cut(s) 637, 1462
EcoT22I ATGCAT 1 cut(s) 703
EcoT38I GRGCYC 1 cut(s) 1104
FaeI CATG 7 cut(s) 420, 437, 905, 1100, 1312, 1442, 1548
FalI AAGNNNNNCTT 2 cut(s) 745, 777
FaqI GGGAC 2 cut(s) 889, 1495
FatI CATG 7 cut(s) 416, 433, 901, 1096, 1308, 1438, 1544
FauI CCCGC 1 cut(s) 1492
FauNDI CATATG 2 cut(s) 703, 1513
FbaI TGATCA 2 cut(s) 199, 994
FblI GTMKAC 1 cut(s) 1278
Fnu4HI GCNGC 4 cut(s) 221, 790, 1190, 1201
FokI GGATG 1 cut(s) 1352
FriOI GRGCYC 1 cut(s) 1104
Fsp4HI GCNGC 4 cut(s) 221, 790, 1190, 1201
FspBI CTAG 3 cut(s) 327, 926, 1485
GlaI GCGC 1 cut(s) 1037
GluI GCNGC 4 cut(s) 221, 790, 1190, 1201
GsuI CTGGAG 1 cut(s) 486
HaeIII GGCC 3 cut(s) 432, 479, 771
HapII CCGG 2 cut(s) 631, 1001
HhaI GCGC 1 cut(s) 1038
Hin1II CATG 7 cut(s) 420, 437, 905, 1100, 1312, 1442, 1548
Hin6I GCGC 1 cut(s) 1036
HinP1I GCGC 1 cut(s) 1036
HincII GTYRAC 1 cut(s) 656
HindII GTYRAC 1 cut(s) 656
HindIII AAGCTT 1 cut(s) 311
HpaII CCGG 2 cut(s) 631, 1001
HphI GGTGA 8 cut(s) 134, 299, 880, 1015, 1310, 1342, 1414, 1532
Hpy166II GTNNAC 5 cut(s) 656, 829, 1208, 1279, 1519
Hpy188III TCNNGA 2 cut(s) 465, 1265
Hpy8I GTNNAC 5 cut(s) 656, 829, 1208, 1279, 1519
HpyCH4III ACNGT 8 cut(s) 29, 104, 251, 576, 751, 844, 1181, 1217
HpyCH4V TGCA 6 cut(s) 552, 701, 819, 923, 956, 1084
HpyF10VI GCNNNNNNNGC 4 cut(s) 777, 786, 1454, 1496
HpyF3I CTNAG 3 cut(s) 44, 75, 333
Hsp92II CATG 7 cut(s) 420, 437, 905, 1100, 1312, 1442, 1548
HspAI GCGC 1 cut(s) 1036
Ksp22I TGATCA 2 cut(s) 199, 994
Kzo9I GATC 8 cut(s) 127, 199, 365, 894, 994, 1005, 1290, 1404
LmnI GCTCC 2 cut(s) 1171, 1197
Lsp1109I GCAGC 2 cut(s) 232, 776
LweI GCATC 2 cut(s) 688, 1066
MaeI CTAG 3 cut(s) 327, 926, 1485
MaeIII GTNAC 1 cut(s) 505
MalI GATC 8 cut(s) 129, 201, 367, 896, 996, 1007, 1292, 1406
MbiI CCGCTC 1 cut(s) 1192
MboI GATC 8 cut(s) 127, 199, 365, 894, 994, 1005, 1290, 1404
MfeI CAATTG 1 cut(s) 302
MflI RGATCY 3 cut(s) 127, 894, 1290
MhlI GDGCHC 2 cut(s) 888, 1104
MlsI TGGCCA 1 cut(s) 432
MluNI TGGCCA 1 cut(s) 432
MlyI GAGTC 3 cut(s) 260, 344, 1265
MmeI TCCRAC 2 cut(s) 135, 207
MnlI CCTC 4 cut(s) 542, 949, 1162, 1365
Mox20I TGGCCA 1 cut(s) 432
Mph1103I ATGCAT 1 cut(s) 703
MroXI GAANNNNTTC 1 cut(s) 963
MscI TGGCCA 1 cut(s) 432
MseI TTAA 3 cut(s) 177, 1158, 1286
MslI CAYNNNNRTG 2 cut(s) 59, 438
Msp20I TGGCCA 1 cut(s) 432
MspI CCGG 2 cut(s) 631, 1001
MspR9I CCNGG 3 cut(s) 632, 663, 1526
MunI CAATTG 1 cut(s) 302
Mva1269I GAATGC 2 cut(s) 708, 1067
MvaI CCWGG 2 cut(s) 663, 1526
MvnI CGCG 1 cut(s) 1036
MwoI GCNNNNNNNGC 4 cut(s) 777, 786, 1454, 1496
NciI CCSGG 1 cut(s) 632
NdeI CATATG 2 cut(s) 703, 1513
NdeII GATC 8 cut(s) 127, 199, 365, 894, 994, 1005, 1290, 1404
NlaIII CATG 7 cut(s) 420, 437, 905, 1100, 1312, 1442, 1548
NmuCI GTSAC 1 cut(s) 505
NsiI ATGCAT 1 cut(s) 703
OliI CACNNNNGTG 1 cut(s) 59
PctI GAATGC 2 cut(s) 708, 1067
PdmI GAANNNNTTC 1 cut(s) 963
PfeI GAWTC 8 cut(s) 14, 20, 71, 116, 188, 740, 869, 911
PfoI TCCNGGA 1 cut(s) 630
PkrI GCNGC 4 cut(s) 222, 791, 1191, 1202
PleI GAGTC 3 cut(s) 260, 343, 1265
PpsI GAGTC 3 cut(s) 260, 343, 1265
Psp6I CCWGG 2 cut(s) 661, 1524
PspGI CCWGG 2 cut(s) 661, 1524
PspPI GGNCC 2 cut(s) 905, 1208
PsuI RGATCY 3 cut(s) 127, 894, 1290
RsaI GTAC 3 cut(s) 112, 262, 1530
RsaNI GTAC 3 cut(s) 111, 261, 1529
RseI CAYNNNNRTG 2 cut(s) 59, 438
SaqAI TTAA 3 cut(s) 177, 1158, 1286
SatI GCNGC 4 cut(s) 221, 790, 1190, 1201
Sau3AI GATC 8 cut(s) 127, 199, 365, 894, 994, 1005, 1290, 1404
Sau96I GGNCC 2 cut(s) 905, 1208
ScaI AGTACT 2 cut(s) 112, 262
SchI GAGTC 3 cut(s) 260, 344, 1265
ScrFI CCNGG 3 cut(s) 632, 663, 1526
SduI GDGCHC 2 cut(s) 888, 1104
SfaNI GCATC 2 cut(s) 688, 1066
SfcI CTRYAG 1 cut(s) 339
SinI GGWCC 2 cut(s) 905, 1208
SmiMI CAYNNNNRTG 2 cut(s) 59, 438
SpeI ACTAGT 1 cut(s) 1484
SsiI CCGC 5 cut(s) 11, 1190, 1201, 1337, 1499
SspI AATATT 1 cut(s) 490
SspMI CTAG 3 cut(s) 327, 926, 1485
StyD4I CCNGG 3 cut(s) 630, 661, 1524
TaaI ACNGT 8 cut(s) 29, 104, 251, 576, 751, 844, 1181, 1217
TaqI TCGA 1 cut(s) 1330
TatI WGTACW 2 cut(s) 110, 260
TauI GCSGC 2 cut(s) 1192, 1203
TfiI GAWTC 8 cut(s) 14, 20, 71, 116, 188, 740, 869, 911
Tru1I TTAA 3 cut(s) 177, 1158, 1286
Tru9I TTAA 3 cut(s) 177, 1158, 1286
TscAI CASTG 7 cut(s) 375, 487, 581, 849, 888, 1210, 1233
TseFI GTSAC 1 cut(s) 505
TseI GCWGC 2 cut(s) 220, 789
Tsp45I GTSAC 1 cut(s) 505
TspDTI ATGAA 7 cut(s) 288, 471, 595, 876, 1325, 1377, 1436
TspRI CASTG 7 cut(s) 375, 487, 581, 849, 888, 1210, 1233
VpaK11BI GGWCC 2 cut(s) 905, 1208
XagI CCTNNNNNAGG 1 cut(s) 870
XapI RAATTY 2 cut(s) 458, 950
XmiI GTMKAC 1 cut(s) 1278
XmnI GAANNNNTTC 1 cut(s) 963
XspI CTAG 3 cut(s) 327, 926, 1485
ZrmI AGTACT 2 cut(s) 112, 262
Zsp2I ATGCAT 1 cut(s) 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.