Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0003684

Physical Location & Seq

Genomic Coordinates Reverse (-)

12342226 .. 12345138

Gene Structure 2913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1150100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGCGTGATCTATCTCATGATCATTTGGTGAAAGTTGAGTTTCACGGATATCGCAACAAAAGGATTGTTCCTGTAATTGAAACTTGCGAATATCCGGGACACAAAAGGTTCAAGCATACCGTGGAGATCAAAGATGTTGTTGCAGACCATGCTCTTGAATTCCTCCCTGCAAAAACACTCTCCCGGTTCAGAGCTGTTAGCAAAGAGTGGGATAAGCGGATTACCAGCCCTTTCTTCATCCACAAGCAAGGTTACCGCTTCCGGGATATCTCTGGTCTCTTTTGTCAACTCCCTGGCGACAGGCCCTTCTTTGTATCTCTTAATCATGATGCTTATGGCGTTCCCAGTCCTTCCCTCAGCTTCTTGCCTGAACCGGTTACTGTCAGAACGAGCTGCAATGGTCTGCTTTGCTGCCAAAGCTGTGATGGAGAGAATACCTACTACATTTGCAATCCTGCTAACAAGGAGTGGAAAGCGCTTCCCCAGTCGAACTTCTATCATGGCCCTGAACCTGCTCTAGCTCTAGCCTTTGAGCCTTCTGTGCTTAATTTTGCAGAGCATTTCCAACTTGTTTGCGCCTTCTCTCTAACTGATCATGCCTTCTCTCTAACTGACCATCCGGTTATCTGTTTCGAGATCTACTCTTCGAGGTCATCCTCATGGAGACTTGCTGACACAGAATGCTGTGAGTTGGATGCTATGAAGTTGAATGGTGACGGGCTCTTTCTGAAGGGCGTAGCCTTTTGGGAAACTTCTGCTGGGGCTGTTTTGGCTTTTGATTTGAATGACGAGCATTATGGTATTCTGTCGCTTCCCATCAACAGCGGACCACATGGTGTATTGACAGAGATGAATGGTGAGCTGTGCTACCTTCTGCCTCACAAAGACAAGAATGAATACACCCTGGACATCTATGGTGACATGGACATGCATCTGAAGCATAGTATTGCTCTTGGTCTTGAGTTTTTCAACAATTTTAACAAGGAGTTGAGGGCGTTGGCTTGCGTGAACAATGACATGGTGATATTTGATTTTGGAAAGAGACTCTATGCTTATAATCTGAAGACAGGGAAGGCTGAAATTCTAAGAAGTGATGACGGGACTGATGTTGGATATGTAAGGTATCTTCCATATGTCAACAACCTCGTGCACGTTCACCCTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

389

Amino Acids

44.08

Weight (kDa)

5.93

Isoelectric Point (pI)

42.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
b-prop_At3g26010-like	PF24750	127 - 305	3.6e-08	F-box protein At3g26010-like, beta-propeller
FBA_3	PF08268	127 - 311	4.6e-07	F-box associated beta propeller domain
FBA_1	PF07734	130 - 296	2.3e-12	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003684)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13470 FvH4_1g13470 FvH4_1g13480 FvH4_1g13480 FvH4_1g13480
malus_domestica	MD02G1150100.v1.1 MD02G1150200.v1.1
prunus_persica	Prupe.7G152900_v2.0.a1 Prupe.7G153000_v2.0.a1 Prupe.7G153000_v2.0.a1
pyrus_communis	pycom02g11790 pycom02g11800 pycom15g23040
rosa_chinensis	RchiOBHm_Chr2g0101851 RchiOBHm_Chr2g0101871
rosa_laevigata	RLG00000017105 RLG00000017106
rosa_multiflora	Rmu_sc0000838.1_g000007 Rmu_sc0000838.1_g000009
rosa_roxburghii	Rroxscaffold_2G00140980 Rroxscaffold_2G00140990
rosa_rugosa	Rorug02G0102400 Rorug02G0102600 Rorug02G0102700 Rorug02G0102800
rosa_samantha	Rh2AG149900 Rh2AG150000 Rh2BG155400 Rh2BG155600 Rh2CG155800 Rh2CG155900 Rh2DG155600 Rh2DG155700
rosa_wichuraiana	Rw2G011730 Rw2G011740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1056
Acc36I	ACCTGC	1 cut(s)	520
AciI	CCGC	3 cut(s)	217, 256, 825
AcsI	RAATTY	2 cut(s)	158, 1080
AcuI	CTGAAG	3 cut(s)	749, 956, 1082
AdeI	CACNNNGTG	1 cut(s)	836
AfeI	AGCGCT	1 cut(s)	477
AfiI	CCNNNNNNNGG	1 cut(s)	262
AgeI	ACCGGT	1 cut(s)	373
AgsI	TTSAA	6 cut(s)	80, 112, 158, 709, 784, 970
AjnI	CCWGG	2 cut(s)	292, 903
AluBI	AGCT	6 cut(s)	194, 360, 393, 420, 521, 862
AluI	AGCT	6 cut(s)	194, 360, 393, 420, 521, 862
Alw21I	GWGCWC	1 cut(s)	1152
Alw26I	GTCTC	3 cut(s)	281, 658, 1036
Alw44I	GTGCAC	1 cut(s)	1148
Aor51HI	AGCGCT	1 cut(s)	477
AoxI	GGCC	2 cut(s)	302, 502
ApaLI	GTGCAC	1 cut(s)	1148
ApeKI	GCWGC	2 cut(s)	393, 411
ApoI	RAATTY	2 cut(s)	158, 1080
AsiGI	ACCGGT	1 cut(s)	373
AspLEI	GCGC	2 cut(s)	478, 578
AspS9I	GGNCC	3 cut(s)	303, 503, 827
AsuC2I	CCSGG	3 cut(s)	96, 184, 263
AsuHPI	GGTGA	6 cut(s)	40, 725, 869, 929, 1033, 1148
AvaII	GGWCC	1 cut(s)	827
BaeGI	GKGCMC	1 cut(s)	1152
BanII	GRGCYC	1 cut(s)	723
BarI	GAAGNNNNNNTAC	2 cut(s)	1110, 1142
BauI	CACGAG	1 cut(s)	1145
BbsI	GAAGAC	1 cut(s)	1070
Bbv12I	GWGCWC	1 cut(s)	1152
BbvCI	CCTCAGC	1 cut(s)	356
BbvI	GCAGC	2 cut(s)	380, 398
BccI	CCATC	3 cut(s)	419, 624, 824
BciT130I	CCWGG	2 cut(s)	294, 905
BclI	TGATCA	2 cut(s)	19, 592
BcnI	CCSGG	3 cut(s)	96, 184, 263
BcoDI	GTCTC	3 cut(s)	281, 658, 1036
BfaI	CTAG	2 cut(s)	518, 524
BfoI	RGCGCY	1 cut(s)	479
BfuAI	ACCTGC	1 cut(s)	520
BglII	AGATCT	1 cut(s)	636
BisI	GCNGC	2 cut(s)	394, 412
BlsI	GCNGC	2 cut(s)	395, 413
Bme1390I	CCNGG	5 cut(s)	96, 184, 263, 294, 905
Bme18I	GGWCC	1 cut(s)	827
BmgT120I	GGNCC	3 cut(s)	303, 503, 827
BmrFI	CCNGG	5 cut(s)	96, 184, 263, 294, 905
BmrI	ACTGGG	2 cut(s)	339, 478
BmsI	GCATC	3 cut(s)	319, 685, 940
BmuI	ACTGGG	2 cut(s)	339, 478
BpiI	GAAGAC	1 cut(s)	1070
BplI	GAGNNNNNCTC	2 cut(s)	626, 658
Bpu10I	CCTNAGC	1 cut(s)	356
BpuEI	CTTGAG	1 cut(s)	980
BpuMI	CCSGG	3 cut(s)	96, 184, 263
BsaI	GGTCTC	1 cut(s)	281
BsaJI	CCNNGG	3 cut(s)	120, 292, 903
BsaWI	WCCGGW	2 cut(s)	373, 619
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse118I	RCCGGY	1 cut(s)	373
Bse1I	ACTGG	2 cut(s)	345, 484
Bse3DI	GCAATG	1 cut(s)	403
BseBI	CCWGG	2 cut(s)	294, 905
BseDI	CCNNGG	3 cut(s)	120, 292, 903
BseGI	GGATG	4 cut(s)	237, 616, 653, 700
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseMI	GCAATG	1 cut(s)	403
BseMII	CTCAG	1 cut(s)	370
BseNI	ACTGG	2 cut(s)	345, 484
BseSI	GKGCMC	1 cut(s)	1152
BseXI	GCAGC	2 cut(s)	380, 398
BseYI	CCCAGC	1 cut(s)	758
BshFI	GGCC	2 cut(s)	304, 504
BshTI	ACCGGT	1 cut(s)	373
BsiHKAI	GWGCWC	1 cut(s)	1152
BsiSI	CCGG	5 cut(s)	95, 184, 262, 374, 620
BslFI	GGGAC	2 cut(s)	111, 1114
BslI	CCNNNNNNNGG	1 cut(s)	262
BsmAI	GTCTC	3 cut(s)	281, 658, 1036
BsmFI	GGGAC	2 cut(s)	111, 1114
BsmI	GAATGC	1 cut(s)	686
BsnI	GGCC	2 cut(s)	304, 504
Bso31I	GGTCTC	1 cut(s)	281
Bsp1286I	GDGCHC	2 cut(s)	723, 1152
Bsp143I	GATC	5 cut(s)	7, 19, 126, 592, 636
BspACI	CCGC	3 cut(s)	217, 256, 825
BspANI	GGCC	2 cut(s)	304, 504
BspCNI	CTCAG	1 cut(s)	369
BspHI	TCATGA	2 cut(s)	16, 325
BspMI	ACCTGC	1 cut(s)	520
BspTNI	GGTCTC	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	403
BsrFI	RCCGGY	1 cut(s)	373
BsrI	ACTGG	2 cut(s)	345, 484
BssAI	RCCGGY	1 cut(s)	373
BssECI	CCNNGG	3 cut(s)	120, 292, 903
BssMI	GATC	5 cut(s)	7, 19, 126, 592, 636
BssSI	CACGAG	1 cut(s)	1145
Bst2BI	CACGAG	1 cut(s)	1145
Bst2UI	CCWGG	2 cut(s)	294, 905
Bst4CI	ACNGT	2 cut(s)	121, 382
Bst6I	CTCTTC	1 cut(s)	649
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	1003
BstDEI	CTNAG	2 cut(s)	356, 1085
BstDSI	CCRYGG	1 cut(s)	120
BstEII	GGTNACC	1 cut(s)	251
BstF5I	GGATG	4 cut(s)	237, 616, 653, 700
BstH2I	RGCGCY	1 cut(s)	479
BstHHI	GCGC	2 cut(s)	478, 578
BstKTI	GATC	5 cut(s)	10, 22, 129, 595, 639
BstMAI	GTCTC	3 cut(s)	281, 658, 1036
BstMBI	GATC	5 cut(s)	7, 19, 126, 592, 636
BstMWI	GCNNNNNNNGC	5 cut(s)	149, 417, 541, 770, 937
BstNI	CCWGG	2 cut(s)	294, 905
BstNSI	RCATGY	1 cut(s)	931
BstPI	GGTNACC	1 cut(s)	251
BstSCI	CCNGG	5 cut(s)	94, 182, 261, 292, 903
BstSLI	GKGCMC	1 cut(s)	1152
BstV1I	GCAGC	2 cut(s)	380, 398
BstV2I	GAAGAC	1 cut(s)	1070
BstX2I	RGATCY	1 cut(s)	636
BstYI	RGATCY	1 cut(s)	636
BsuRI	GGCC	2 cut(s)	304, 504
BtgI	CCRYGG	1 cut(s)	120
BtsCI	GGATG	4 cut(s)	237, 616, 653, 700
BveI	ACCTGC	1 cut(s)	520
Cac8I	GCNNGC	1 cut(s)	1003
CciI	TCATGA	2 cut(s)	16, 325
CfoI	GCGC	2 cut(s)	478, 578
Cfr10I	RCCGGY	1 cut(s)	373
Cfr13I	GGNCC	3 cut(s)	303, 503, 827
CspAI	ACCGGT	1 cut(s)	373
DdeI	CTNAG	2 cut(s)	356, 1085
DpnI	GATC	5 cut(s)	9, 21, 128, 594, 638
DpnII	GATC	5 cut(s)	7, 19, 126, 592, 636
DraIII	CACNNNGTG	1 cut(s)	836
Eam1104I	CTCTTC	1 cut(s)	649
EarI	CTCTTC	1 cut(s)	649
Eco24I	GRGCYC	1 cut(s)	723
Eco31I	GGTCTC	1 cut(s)	281
Eco32I	GATATC	2 cut(s)	50, 268
Eco47I	GGWCC	1 cut(s)	827
Eco47III	AGCGCT	1 cut(s)	477
Eco57I	CTGAAG	3 cut(s)	749, 956, 1082
Eco91I	GGTNACC	1 cut(s)	251
EcoO109I	RGGNCCY	1 cut(s)	303
EcoO65I	GGTNACC	1 cut(s)	251
EcoRI	GAATTC	1 cut(s)	158
EcoRII	CCWGG	2 cut(s)	292, 903
EcoRV	GATATC	2 cut(s)	50, 268
EcoT22I	ATGCAT	1 cut(s)	933
EcoT38I	GRGCYC	1 cut(s)	723
FaqI	GGGAC	2 cut(s)	111, 1114
FauNDI	CATATG	1 cut(s)	1132
FbaI	TGATCA	2 cut(s)	19, 592
Fnu4HI	GCNGC	2 cut(s)	394, 412
FokI	GGATG	4 cut(s)	224, 603, 640, 707
FriOI	GRGCYC	1 cut(s)	723
Fsp4HI	GCNGC	2 cut(s)	394, 412
FspBI	CTAG	2 cut(s)	518, 524
GlaI	GCGC	2 cut(s)	477, 577
GluI	GCNGC	2 cut(s)	394, 412
GsaI	CCCAGC	1 cut(s)	762
HaeII	RGCGCY	1 cut(s)	479
HaeIII	GGCC	2 cut(s)	304, 504
HapII	CCGG	5 cut(s)	95, 184, 262, 374, 620
HhaI	GCGC	2 cut(s)	478, 578
Hin6I	GCGC	2 cut(s)	476, 576
HinP1I	GCGC	2 cut(s)	476, 576
HincII	GTYRAC	2 cut(s)	287, 1138
HindII	GTYRAC	2 cut(s)	287, 1138
HinfI	GANTC	1 cut(s)	1044
HpaII	CCGG	5 cut(s)	95, 184, 262, 374, 620
HphI	GGTGA	6 cut(s)	40, 725, 869, 929, 1033, 1148
Hpy166II	GTNNAC	5 cut(s)	287, 1009, 1138, 1150, 1156
Hpy188I	TCNGA	5 cut(s)	191, 386, 729, 936, 1062
Hpy188III	TCNNGA	5 cut(s)	17, 155, 326, 634, 959
Hpy8I	GTNNAC	5 cut(s)	287, 1009, 1138, 1150, 1156
HpyAV	CCTTC	8 cut(s)	316, 360, 546, 589, 610, 724, 881, 1066
HpyCH4III	ACNGT	2 cut(s)	121, 382
HpyCH4IV	ACGT	1 cut(s)	1152
HpyCH4V	TGCA	7 cut(s)	143, 170, 396, 450, 554, 931, 1150
HpyF10VI	GCNNNNNNNGC	5 cut(s)	149, 417, 541, 770, 937
HpyF3I	CTNAG	2 cut(s)	356, 1085
HpySE526I	ACGT	1 cut(s)	1152
HspAI	GCGC	2 cut(s)	476, 576
Ksp22I	TGATCA	2 cut(s)	19, 592
Kzo9I	GATC	5 cut(s)	7, 19, 126, 592, 636
Lsp1109I	GCAGC	2 cut(s)	380, 398
LweI	GCATC	3 cut(s)	319, 685, 940
MaeI	CTAG	2 cut(s)	518, 524
MaeII	ACGT	1 cut(s)	1152
MaeIII	GTNAC	4 cut(s)	251, 376, 713, 917
MalI	GATC	5 cut(s)	9, 21, 128, 594, 638
MboI	GATC	5 cut(s)	7, 19, 126, 592, 636
MboII	GAAGA	4 cut(s)	226, 636, 1075, 1118
MflI	RGATCY	1 cut(s)	636
MhlI	GDGCHC	2 cut(s)	723, 1152
MluCI	AATT	5 cut(s)	75, 158, 547, 973, 1080
MlyI	GAGTC	1 cut(s)	1038
MmeI	TCCRAC	3 cut(s)	589, 672, 1090
MnlI	CCTC	7 cut(s)	173, 365, 642, 667, 888, 984, 1154
Mph1103I	ATGCAT	1 cut(s)	933
MseI	TTAA	3 cut(s)	321, 546, 978
MslI	CAYNNNNRTG	2 cut(s)	658, 926
MspA1I	CMGCKG	1 cut(s)	825
MspI	CCGG	5 cut(s)	95, 184, 262, 374, 620
MspR9I	CCNGG	5 cut(s)	96, 184, 263, 294, 905
Mva1269I	GAATGC	1 cut(s)	686
MvaI	CCWGG	2 cut(s)	294, 905
MwoI	GCNNNNNNNGC	5 cut(s)	149, 417, 541, 770, 937
NciI	CCSGG	3 cut(s)	96, 184, 263
NdeI	CATATG	1 cut(s)	1132
NdeII	GATC	5 cut(s)	7, 19, 126, 592, 636
NmuCI	GTSAC	2 cut(s)	713, 917
NsiI	ATGCAT	1 cut(s)	933
NspI	RCATGY	1 cut(s)	931
PagI	TCATGA	2 cut(s)	16, 325
PctI	GAATGC	1 cut(s)	686
PfoI	TCCNGGA	2 cut(s)	94, 261
PinAI	ACCGGT	1 cut(s)	373
PkrI	GCNGC	2 cut(s)	395, 413
PleI	GAGTC	1 cut(s)	1038
PpsI	GAGTC	1 cut(s)	1038
PsiI	TTATAA	1 cut(s)	1056
Psp6I	CCWGG	2 cut(s)	292, 903
PspEI	GGTNACC	1 cut(s)	251
PspFI	CCCAGC	1 cut(s)	758
PspGI	CCWGG	2 cut(s)	292, 903
PspPI	GGNCC	3 cut(s)	303, 503, 827
PsuI	RGATCY	1 cut(s)	636
RseI	CAYNNNNRTG	2 cut(s)	658, 926
SaqAI	TTAA	3 cut(s)	321, 546, 978
SatI	GCNGC	2 cut(s)	394, 412
Sau3AI	GATC	5 cut(s)	7, 19, 126, 592, 636
Sau96I	GGNCC	3 cut(s)	303, 503, 827
SchI	GAGTC	1 cut(s)	1038
ScrFI	CCNGG	5 cut(s)	96, 184, 263, 294, 905
SduI	GDGCHC	2 cut(s)	723, 1152
SfaNI	GCATC	3 cut(s)	319, 685, 940
SinI	GGWCC	1 cut(s)	827
SmiMI	CAYNNNNRTG	2 cut(s)	658, 926
SmlI	CTYRAG	1 cut(s)	959
SmoI	CTYRAG	1 cut(s)	959
Sse9I	AATT	5 cut(s)	75, 158, 547, 973, 1080
SsiI	CCGC	3 cut(s)	217, 256, 825
SspMI	CTAG	2 cut(s)	518, 524
StyD4I	CCNGG	5 cut(s)	94, 182, 261, 292, 903
TaaI	ACNGT	2 cut(s)	121, 382
TaiI	ACGT	1 cut(s)	1155
TaqI	TCGA	3 cut(s)	488, 633, 647
TasI	AATT	5 cut(s)	75, 158, 547, 973, 1080
Tru1I	TTAA	3 cut(s)	321, 546, 978
Tru9I	TTAA	3 cut(s)	321, 546, 978
TseFI	GTSAC	2 cut(s)	713, 917
TseI	GCWGC	2 cut(s)	393, 411
Tsp45I	GTSAC	2 cut(s)	713, 917
TspDTI	ATGAA	4 cut(s)	226, 716, 866, 909
TspGWI	ACGGA	1 cut(s)	60
VneI	GTGCAC	1 cut(s)	1148
VpaK11BI	GGWCC	1 cut(s)	827
XapI	RAATTY	2 cut(s)	158, 1080
XceI	RCATGY	1 cut(s)	931
XcmI	CCANNNNNNNNNTGG	1 cut(s)	422
XspI	CTAG	2 cut(s)	518, 524
Zsp2I	ATGCAT	1 cut(s)	933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.