Rorug02G0102600

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003684
Physical Location & Seq
Reverse (-)
8764244 .. 8767430
3187 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0102600.1

Sequence Viewer

Length: 1023 bp
ATGTTGGCGTTGAAAAGGCAAGGCGCCGTTAACTTTCTCACACACCCTTCAAAGCACCGCCAACCTTTGAGTTTAGGTCGTCGTCTTCATCGATTTACAGAGATGGCCGCCTATTTGTACAACCATAACTGTAAGGGATTTCATGCACAAGCCCCAATTCTGCACCCAAATCATCGATTCGCGGGTCCTGTTCGCCAGATTCGGAATCGAAAGACGGCTAATTTGACCGTCGTGAAATGTTGCTTCAATAGTAGCAATCATAACAATAATAGAGTGAAGGGTAATGTGTTTGAGAATCCGAATAATGGGCAGTTGGTCCGGGATTTGGATTCGGAGCTCCGGAGATCCCAGAATGGTGGCTTTCAGGGGAGTCATAATGGGTTTCACAGCCAGACTTTGTCCCGGGATAAAATTGTGGTTGCTGTTGATGTGGATGAGGTTTTGGGCAACTTTGTGTCGGCTCTGAACAGGTTTATTGCCGATCGTTACGCGGCGAACCATACGGTTTCGGAGTACCATGTGTATGAGTTCTTCAAGATATGGAAGTGTTCCCGTGATGAAGCCGATCTTCGTGTTCATGAGTTCTTTAAAACATCATATTTCAAGACTGGGATCCACCCCCTCCCAGGTGCTAAGGAGACGCTTAATAAGTTGTCAGGATTTTGTAATCTGTCAGTTGTGACTTCTCGGCAGAATGCAATCAAGGACCACACAATTCAATGGATTGAAAGTCATTTTCCAGGACTATTTAAGGAGATTCACTTCGGCAACCACTTTGCTCTACATGGAGAGTCAAGGCCTAAGTCAGAAATATGCAGGTCTCTAGGAGCAAAGGTTCTGATTGATGACAATCCAAGGTATGCACTTGAATGTGCCGAAGTTGGGATCAGGGTTCTACTTTTTGATTACGAGAACTCATATCCTTGGTGCAAGTCCGATTCTGTTGATCTACATCCCCTCGTGACCAGGGTTCATAACTGGGAAGCAGTGGAGAAGCAATTATTGGCATGGGTTACTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

340

Amino Acids

38.96

Weight (kDa)

9.3

Isoelectric Point (pI)

29.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NT5C PF06941 138 - 332 1.7e-14 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 807
AccB1I GGYRCC 1 cut(s) 23
AccII CGCG 2 cut(s) 182, 491
AccIII TCCGGA 1 cut(s) 339
AciI CCGC 4 cut(s) 58, 108, 182, 491
AclWI GGATC 4 cut(s) 339, 607, 620, 893
AcoI YGGCCR 1 cut(s) 105
AcyI GRCGYC 1 cut(s) 24
AfaI GTAC 2 cut(s) 119, 515
AfiI CCNNNNNNNGG 4 cut(s) 305, 325, 626, 882
AgsI TTSAA 8 cut(s) 13, 51, 247, 535, 604, 719, 728, 869
AjnI CCWGG 3 cut(s) 625, 739, 965
AjuI GAANNNNNNNTTGG 2 cut(s) 986, 1018
AloI GAACNNNNNNTCC 2 cut(s) 819, 851
AluBI AGCT 1 cut(s) 337
AluI AGCT 1 cut(s) 337
Alw21I GWGCWC 1 cut(s) 339
Alw26I GTCTC 2 cut(s) 632, 825
AlwI GGATC 4 cut(s) 339, 607, 620, 893
Ama87I CYCGRG 1 cut(s) 402
Aor13HI TCCGGA 1 cut(s) 339
AoxI GGCC 2 cut(s) 105, 797
ArsI GACNNNNNNTTYG 2 cut(s) 205, 237
AspLEI GCGC 1 cut(s) 26
AspS9I GGNCC 3 cut(s) 185, 316, 706
AsuC2I CCSGG 3 cut(s) 320, 403, 404
AvaI CYCGRG 1 cut(s) 402
AvaII GGWCC 3 cut(s) 185, 316, 706
BamHI GGATCC 1 cut(s) 612
BanI GGYRCC 1 cut(s) 23
BanII GRGCYC 1 cut(s) 339
BarI GAAGNNNNNNTAC 2 cut(s) 515, 547
BauI CACGAG 1 cut(s) 959
BbsI GAAGAC 1 cut(s) 77
Bbv12I GWGCWC 1 cut(s) 339
BccI CCATC 1 cut(s) 97
BceAI ACGGC 2 cut(s) 11, 231
BciT130I CCWGG 3 cut(s) 627, 741, 967
BcnI CCSGG 3 cut(s) 320, 403, 404
BcoDI GTCTC 2 cut(s) 632, 825
BfaI CTAG 1 cut(s) 824
BfoI RGCGCY 1 cut(s) 27
BfuAI ACCTGC 1 cut(s) 807
BisI GCNGC 2 cut(s) 108, 492
BlsI GCNGC 2 cut(s) 109, 493
Bme1390I CCNGG 6 cut(s) 320, 403, 404, 627, 741, 967
Bme18I GGWCC 3 cut(s) 185, 316, 706
BmeT110I CYCGRG 1 cut(s) 402
BmgT120I GGNCC 3 cut(s) 185, 316, 706
BmiI GGNNCC 3 cut(s) 25, 186, 614
BmrFI CCNGG 6 cut(s) 320, 403, 404, 627, 741, 967
BmrI ACTGGG 2 cut(s) 618, 988
BmuI ACTGGG 2 cut(s) 618, 988
BpiI GAAGAC 1 cut(s) 77
Bpu10I CCTNAGC 1 cut(s) 633
BpuMI CCSGG 3 cut(s) 320, 403, 404
Bsa29I ATCGAT 2 cut(s) 91, 175
BsaBI GATNNNNATC 2 cut(s) 849, 951
BsaHI GRCGYC 1 cut(s) 24
BsaI GGTCTC 1 cut(s) 825
BsaJI CCNNGG 5 cut(s) 402, 625, 854, 923, 966
BsaWI WCCGGW 1 cut(s) 339
BsaXI ACNNNNNCTCC 2 cut(s) 819, 849
Bsc4I CCNNNNNNNGG 4 cut(s) 305, 325, 626, 882
Bse1I ACTGG 2 cut(s) 613, 983
Bse8I GATNNNNATC 2 cut(s) 849, 951
BseAI TCCGGA 1 cut(s) 339
BseBI CCWGG 3 cut(s) 627, 741, 967
BseCI ATCGAT 2 cut(s) 91, 175
BseDI CCNNGG 5 cut(s) 402, 625, 854, 923, 966
BseGI GGATG 2 cut(s) 439, 952
BseJI GATNNNNATC 2 cut(s) 849, 951
BseLI CCNNNNNNNGG 4 cut(s) 305, 325, 626, 882
BseNI ACTGG 2 cut(s) 613, 983
BsgI GTGCAG 1 cut(s) 146
Bsh1236I CGCG 2 cut(s) 182, 491
Bsh1285I CGRYCG 1 cut(s) 484
BshFI GGCC 2 cut(s) 107, 799
BshNI GGYRCC 1 cut(s) 23
BshVI ATCGAT 2 cut(s) 91, 175
BsiEI CGRYCG 1 cut(s) 484
BsiHKAI GWGCWC 1 cut(s) 339
BsiHKCI CYCGRG 1 cut(s) 402
BsiSI CCGG 3 cut(s) 319, 340, 403
BslFI GGGAC 1 cut(s) 385
BslI CCNNNNNNNGG 4 cut(s) 305, 325, 626, 882
BsmAI GTCTC 2 cut(s) 632, 825
BsmBI CGTCTC 1 cut(s) 632
BsmFI GGGAC 1 cut(s) 385
BsmI GAATGC 1 cut(s) 700
BsnI GGCC 2 cut(s) 107, 799
Bso31I GGTCTC 1 cut(s) 825
BsoBI CYCGRG 1 cut(s) 402
Bsp1286I GDGCHC 1 cut(s) 339
Bsp13I TCCGGA 1 cut(s) 339
Bsp1407I TGTACA 1 cut(s) 117
Bsp143I GATC 6 cut(s) 344, 481, 565, 612, 885, 946
BspACI CCGC 4 cut(s) 58, 108, 182, 491
BspANI GGCC 2 cut(s) 107, 799
BspDI ATCGAT 2 cut(s) 91, 175
BspEI TCCGGA 1 cut(s) 339
BspFNI CGCG 2 cut(s) 182, 491
BspHI TCATGA 1 cut(s) 577
BspLI GGNNCC 3 cut(s) 25, 186, 614
BspMI ACCTGC 1 cut(s) 807
BspPI GGATC 4 cut(s) 339, 607, 620, 893
BspT107I GGYRCC 1 cut(s) 23
BspTNI GGTCTC 1 cut(s) 825
BsrGI TGTACA 1 cut(s) 117
BsrI ACTGG 2 cut(s) 613, 983
BssECI CCNNGG 5 cut(s) 402, 625, 854, 923, 966
BssMI GATC 6 cut(s) 344, 481, 565, 612, 885, 946
BssNI GRCGYC 1 cut(s) 24
BssSI CACGAG 1 cut(s) 959
BssT1I CCWWGG 2 cut(s) 854, 923
Bst2BI CACGAG 1 cut(s) 959
Bst2UI CCWGG 3 cut(s) 627, 741, 967
Bst4CI ACNGT 3 cut(s) 131, 229, 505
BstACI GRCGYC 1 cut(s) 24
BstAUI TGTACA 1 cut(s) 117
BstDEI CTNAG 2 cut(s) 633, 801
BstF5I GGATG 2 cut(s) 439, 952
BstFNI CGCG 2 cut(s) 182, 491
BstH2I RGCGCY 1 cut(s) 27
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 6 cut(s) 347, 484, 568, 615, 888, 949
BstMAI GTCTC 2 cut(s) 632, 825
BstMBI GATC 6 cut(s) 344, 481, 565, 612, 885, 946
BstMCI CGRYCG 1 cut(s) 484
BstNI CCWGG 3 cut(s) 627, 741, 967
BstSCI CCNGG 6 cut(s) 318, 401, 402, 625, 739, 965
BstUI CGCG 2 cut(s) 182, 491
BstV2I GAAGAC 1 cut(s) 77
BstX2I RGATCY 2 cut(s) 344, 612
BstXI CCANNNNNNTGG 1 cut(s) 356
BstYI RGATCY 2 cut(s) 344, 612
Bsu15I ATCGAT 2 cut(s) 91, 175
BsuRI GGCC 2 cut(s) 107, 799
BsuTUI ATCGAT 2 cut(s) 91, 175
BtsCI GGATG 2 cut(s) 439, 952
BtsI GCAGTG 1 cut(s) 993
BtsIMutI CAGTG 1 cut(s) 993
BveI ACCTGC 1 cut(s) 807
CciI TCATGA 1 cut(s) 577
CfoI GCGC 1 cut(s) 26
Cfr13I GGNCC 3 cut(s) 185, 316, 706
Cfr9I CCCGGG 1 cut(s) 402
ClaI ATCGAT 2 cut(s) 91, 175
CseI GACGC 1 cut(s) 649
Csp6I GTAC 2 cut(s) 118, 514
CviAII CATG 5 cut(s) 143, 518, 578, 785, 1008
CviJI RGCY 9 cut(s) 107, 152, 218, 337, 360, 390, 461, 563, 799
CviKI_1 RGCY 9 cut(s) 107, 152, 218, 337, 360, 390, 461, 563, 799
CviQI GTAC 2 cut(s) 118, 514
DdeI CTNAG 2 cut(s) 633, 801
DinI GGCGCC 1 cut(s) 25
DpnI GATC 6 cut(s) 346, 483, 567, 614, 887, 948
DpnII GATC 6 cut(s) 344, 481, 565, 612, 885, 946
DraI TTTAAA 1 cut(s) 589
EaeI YGGCCR 1 cut(s) 105
Ecl136II GAGCTC 1 cut(s) 337
Eco130I CCWWGG 2 cut(s) 854, 923
Eco147I AGGCCT 1 cut(s) 799
Eco24I GRGCYC 1 cut(s) 339
Eco31I GGTCTC 1 cut(s) 825
Eco47I GGWCC 3 cut(s) 185, 316, 706
Eco53kI GAGCTC 1 cut(s) 337
Eco88I CYCGRG 1 cut(s) 402
EcoICRI GAGCTC 1 cut(s) 337
EcoO109I RGGNCCY 1 cut(s) 185
EcoRII CCWGG 3 cut(s) 625, 739, 965
EcoT14I CCWWGG 2 cut(s) 854, 923
EcoT38I GRGCYC 1 cut(s) 339
EgeI GGCGCC 1 cut(s) 25
EheI GGCGCC 1 cut(s) 25
ErhI CCWWGG 2 cut(s) 854, 923
Esp3I CGTCTC 1 cut(s) 632
FaeI CATG 5 cut(s) 146, 521, 581, 788, 1011
FalI AAGNNNNNCTT 2 cut(s) 552, 584
FaqI GGGAC 1 cut(s) 385
FatI CATG 5 cut(s) 142, 517, 577, 784, 1007
FauI CCCGC 1 cut(s) 175
Fnu4HI GCNGC 2 cut(s) 108, 492
FokI GGATG 2 cut(s) 446, 939
FriOI GRGCYC 1 cut(s) 339
Fsp4HI GCNGC 2 cut(s) 108, 492
FspBI CTAG 1 cut(s) 824
GlaI GCGC 1 cut(s) 25
GluI GCNGC 2 cut(s) 108, 492
HaeII RGCGCY 1 cut(s) 27
HaeIII GGCC 2 cut(s) 107, 799
HapII CCGG 3 cut(s) 319, 340, 403
HgaI GACGC 1 cut(s) 649
HhaI GCGC 1 cut(s) 26
Hin1I GRCGYC 1 cut(s) 24
Hin1II CATG 5 cut(s) 146, 521, 581, 788, 1011
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HinfI GANTC 9 cut(s) 177, 199, 205, 295, 329, 370, 757, 791, 938
HpaI GTTAAC 1 cut(s) 31
HpaII CCGG 3 cut(s) 319, 340, 403
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 8 cut(s) 204, 300, 334, 465, 511, 808, 840, 937
Hpy188III TCNNGA 7 cut(s) 232, 340, 535, 578, 604, 657, 961
Hpy8I GTNNAC 1 cut(s) 31
Hpy99I CGWCG 2 cut(s) 84, 233
HpyAV CCTTC 2 cut(s) 57, 271
HpyCH4III ACNGT 3 cut(s) 131, 229, 505
HpyCH4V TGCA 6 cut(s) 146, 163, 698, 816, 863, 930
HpyF3I CTNAG 2 cut(s) 633, 801
Hsp92I GRCGYC 1 cut(s) 24
Hsp92II CATG 5 cut(s) 146, 521, 581, 788, 1011
HspAI GCGC 1 cut(s) 24
KasI GGCGCC 1 cut(s) 23
Kpn2I TCCGGA 1 cut(s) 339
KspAI GTTAAC 1 cut(s) 31
Kzo9I GATC 6 cut(s) 344, 481, 565, 612, 885, 946
LmnI GCTCC 3 cut(s) 334, 342, 827
MaeI CTAG 1 cut(s) 824
MaeIII GTNAC 4 cut(s) 485, 679, 961, 1012
MalI GATC 6 cut(s) 346, 483, 567, 614, 887, 948
MboI GATC 6 cut(s) 344, 481, 565, 612, 885, 946
MboII GAAGA 3 cut(s) 77, 523, 560
MflI RGATCY 2 cut(s) 344, 612
MhlI GDGCHC 1 cut(s) 339
MluCI AATT 5 cut(s) 156, 220, 411, 714, 998
Mly113I GGCGCC 1 cut(s) 24
MlyI GAGTC 2 cut(s) 379, 800
MnlI CCTC 3 cut(s) 430, 632, 968
MroI TCCGGA 1 cut(s) 339
MseI TTAA 4 cut(s) 30, 588, 645, 750
MslI CAYNNNNRTG 2 cut(s) 522, 868
MspI CCGG 3 cut(s) 319, 340, 403
MspR9I CCNGG 6 cut(s) 320, 403, 404, 627, 741, 967
Mva1269I GAATGC 1 cut(s) 700
MvaI CCWGG 3 cut(s) 627, 741, 967
MvnI CGCG 2 cut(s) 182, 491
NarI GGCGCC 1 cut(s) 24
NciI CCSGG 3 cut(s) 320, 403, 404
NdeII GATC 6 cut(s) 344, 481, 565, 612, 885, 946
NlaIII CATG 5 cut(s) 146, 521, 581, 788, 1011
NlaIV GGNNCC 3 cut(s) 25, 186, 614
NmeAIII GCCGAG 1 cut(s) 667
NmuCI GTSAC 2 cut(s) 679, 961
PagI TCATGA 1 cut(s) 577
PceI AGGCCT 1 cut(s) 799
PcsI WCGNNNNNNNCGW 1 cut(s) 88
PctI GAATGC 1 cut(s) 700
PfeI GAWTC 7 cut(s) 177, 199, 205, 295, 329, 757, 938
PflFI GACNNNGTC 1 cut(s) 397
PfoI TCCNGGA 2 cut(s) 318, 739
PkrI GCNGC 2 cut(s) 109, 493
Ple19I CGATCG 1 cut(s) 484
PleI GAGTC 2 cut(s) 378, 799
PluTI GGCGCC 1 cut(s) 27
PpsI GAGTC 2 cut(s) 378, 799
PpuMI RGGWCCY 1 cut(s) 185
Psp124BI GAGCTC 1 cut(s) 339
Psp5II RGGWCCY 1 cut(s) 185
Psp6I CCWGG 3 cut(s) 625, 739, 965
PspGI CCWGG 3 cut(s) 625, 739, 965
PspN4I GGNNCC 3 cut(s) 25, 186, 614
PspPI GGNCC 3 cut(s) 185, 316, 706
PspPPI RGGWCCY 1 cut(s) 185
PsuI RGATCY 2 cut(s) 344, 612
PsyI GACNNNGTC 1 cut(s) 397
PvuI CGATCG 1 cut(s) 484
RsaI GTAC 2 cut(s) 119, 515
RsaNI GTAC 2 cut(s) 118, 514
RseI CAYNNNNRTG 2 cut(s) 522, 868
SacI GAGCTC 1 cut(s) 339
SaqAI TTAA 4 cut(s) 30, 588, 645, 750
SatI GCNGC 2 cut(s) 108, 492
Sau3AI GATC 6 cut(s) 344, 481, 565, 612, 885, 946
Sau96I GGNCC 3 cut(s) 185, 316, 706
SchI GAGTC 2 cut(s) 379, 800
ScrFI CCNGG 6 cut(s) 320, 403, 404, 627, 741, 967
SduI GDGCHC 1 cut(s) 339
SetI ASST 9 cut(s) 67, 79, 339, 441, 473, 631, 821, 837, 860
SfoI GGCGCC 1 cut(s) 25
SinI GGWCC 3 cut(s) 185, 316, 706
SmaI CCCGGG 1 cut(s) 404
SmiMI CAYNNNNRTG 2 cut(s) 522, 868
Sse9I AATT 5 cut(s) 156, 220, 411, 714, 998
SseBI AGGCCT 1 cut(s) 799
SsiI CCGC 4 cut(s) 58, 108, 182, 491
SspDI GGCGCC 1 cut(s) 23
SspMI CTAG 1 cut(s) 824
SstI GAGCTC 1 cut(s) 339
StuI AGGCCT 1 cut(s) 799
StyD4I CCNGG 6 cut(s) 318, 401, 402, 625, 739, 965
StyI CCWWGG 2 cut(s) 854, 923
TaaI ACNGT 3 cut(s) 131, 229, 505
TaqI TCGA 3 cut(s) 91, 175, 208
TasI AATT 5 cut(s) 156, 220, 411, 714, 998
TatI WGTACW 1 cut(s) 117
TauI GCSGC 2 cut(s) 110, 494
TfiI GAWTC 7 cut(s) 177, 199, 205, 295, 329, 757, 938
Tru1I TTAA 4 cut(s) 30, 588, 645, 750
Tru9I TTAA 4 cut(s) 30, 588, 645, 750
TscAI CASTG 1 cut(s) 993
TseFI GTSAC 2 cut(s) 679, 961
Tsp45I GTSAC 2 cut(s) 679, 961
TspDTI ATGAA 6 cut(s) 77, 131, 566, 573, 962, 1008
TspMI CCCGGG 1 cut(s) 402
TspRI CASTG 1 cut(s) 993
Tth111I GACNNNGTC 1 cut(s) 397
VpaK11BI GGWCC 3 cut(s) 185, 316, 706
XmaI CCCGGG 1 cut(s) 402
XspI CTAG 1 cut(s) 824
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.