Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003684

Physical Location & Seq

Genomic Coordinates Reverse (-)

13707360 .. 13709294

Gene Structure 1935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG150000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGGCGACTTCTGAGGAGGAGCATCCCGTTGATAATGACAATCTTGTGGACAATGATTCTGAAGAAGATCTGTTTGATGACATTGCAGAACAGCATATAGAGTCTTCAAATGAGCTCAAAGTGGTGGATCGCTCTGATGTGTTTGGCAGAGATCCTCGCAAAAGAACTGCTCCTGTAGATGTTCCTTATGATGAATTTCCACACAAAAGGTTTAAGCAAAACATGGAGATCCAAGATGTTGTAATGGAGCATGCTCTTTATTTCCTCCCTGCCAAGTCGCTTTGCAGATTCAAAACTGTTAACAAAGAGTGGGATCGGTACATTAACAGTCCCTTTTTCGCTCACCAGCAAACTCACTCCTTCCGAGACATCTCTGGTCTTTTTTGTCAACTCCCTGGTGATAAGCCTTCCTTCATATCACTCGATCAAGATGCTTATGGCATTCCTAGTCCATCCCTCAGTTTCTTGCCTCAGCCTGTTACTCTCAGAACCGCTTGCAATGGCCTGCTTTGCTGCCAAAACTGCTTTGAACAAAATAGCTACTACATTTGTAACCCTGTGAATGAGGAATGGAAAGTGCTTCCGGAGCCAAACTTTTATCATGGACCTGATCAATCAGCCTTGGCACTAGCCTTTGAGCCTTCGGCACTAAACTTTGCAGCACATTTTGAACTTGTGTGTGCATTTTCTCTATCTTTAACTGATCAACCAGTCATCTGCTTTGAGATATACTCTTCAAGGTCAAGGTCCTGGAGACTCGCTGAGACTGTATGTTCTGAGCTAGATGCCTTGAAGTTGAATGGGGATGGAATCTTCCTGAAGGGTGTAGTCTTTTGGGAAACTTTTGCTGGGGCCATTCTGGCTTTTGACTTGAAGGAGGAGCACTATGGCATTCTGTCACTTCCTCCCAACAGTGGACCGCAAGGTGTTCTAACAGAGATGCGGGGTGAGCTGTGCTATATTCTGCCTGTTAGAGAAGGTAATAGTTACACCTTGGAAATCTATGGTGATATGGACATGAATCTCAAGCATATAATTCCTCTCAATCTTGGTTTTCTTTCTCATACTCACCAAGAGTCGATAAGGGTTTTGGCTTGTGTGAATGATGATGCTGTGGTAATTCTTTTTGGAGACAGAGTGATTGCTTATAATATGAAAGCTAGGACGGTTGAAACATTAAGGGATATAGTGAATGGTAATTACAATGGTGAATACAATGCTGGATTTGCAAAGTATCTTCCTTATGTGAACAGCCTTGTTCATGTACACTCATCATACATAACGAGCCTCCTTTCTGAAGATCCTACTACCTCCTATTCCTATCTGAAGTCTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

445

Amino Acids

50.41

Weight (kDa)

4.78

Isoelectric Point (pI)

45.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	163 - 332	8.8e-07	F-box associated beta propeller domain
FBA_1	PF07734	164 - 335	4.9e-12	F-box associated beta propeller domain
b-prop_At3g26010-like	PF24750	164 - 335	5.3e-09	F-box protein At3g26010-like, beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003684)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13470 FvH4_1g13470 FvH4_1g13480 FvH4_1g13480 FvH4_1g13480
malus_domestica	MD02G1150100.v1.1 MD02G1150200.v1.1
prunus_persica	Prupe.7G152900_v2.0.a1 Prupe.7G153000_v2.0.a1 Prupe.7G153000_v2.0.a1
pyrus_communis	pycom02g11790 pycom02g11800 pycom15g23040
rosa_chinensis	RchiOBHm_Chr2g0101851 RchiOBHm_Chr2g0101871
rosa_laevigata	RLG00000017105 RLG00000017106
rosa_multiflora	Rmu_sc0000838.1_g000007 Rmu_sc0000838.1_g000009
rosa_roxburghii	Rroxscaffold_2G00140980 Rroxscaffold_2G00140990
rosa_rugosa	Rorug02G0102400 Rorug02G0102600 Rorug02G0102700 Rorug02G0102800
rosa_samantha	Rh2AG149900 Rh2AG150000 Rh2BG155400 Rh2BG155600 Rh2CG155800 Rh2CG155900 Rh2DG155600 Rh2DG155700
rosa_wichuraiana	Rw2G011730 Rw2G011740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1149
AccIII	TCCGGA	1 cut(s)	583
AciI	CCGC	3 cut(s)	492, 920, 943
AclWI	GGATC	5 cut(s)	135, 146, 223, 321, 1295
AcsI	RAATTY	1 cut(s)	194
AcuI	CTGAAG	3 cut(s)	81, 839, 1317
AfaI	GTAC	2 cut(s)	320, 1266
AfiI	CCNNNNNNNGG	1 cut(s)	914
AgsI	TTSAA	9 cut(s)	108, 292, 530, 671, 738, 793, 799, 874, 1172
AjnI	CCWGG	2 cut(s)	394, 749
AluBI	AGCT	5 cut(s)	115, 540, 781, 952, 1160
AluI	AGCT	5 cut(s)	115, 540, 781, 952, 1160
Alw21I	GWGCWC	2 cut(s)	117, 885
Alw26I	GTCTC	4 cut(s)	360, 748, 758, 1125
AlwI	GGATC	5 cut(s)	135, 146, 223, 321, 1295
Aor13HI	TCCGGA	1 cut(s)	583
AoxI	GGCC	2 cut(s)	502, 852
ApeKI	GCWGC	2 cut(s)	513, 659
ApoI	RAATTY	1 cut(s)	194
AspS9I	GGNCC	4 cut(s)	605, 747, 852, 917
AsuHPI	GGTGA	6 cut(s)	335, 410, 959, 1019, 1061, 1220
AvaII	GGWCC	3 cut(s)	605, 747, 917
BanII	GRGCYC	1 cut(s)	117
BbsI	GAAGAC	1 cut(s)	96
Bbv12I	GWGCWC	2 cut(s)	117, 885
BbvCI	CCTCAGC	1 cut(s)	471
BbvI	GCAGC	2 cut(s)	500, 671
BccI	CCATC	2 cut(s)	460, 800
BcgI	CGANNNNNNTGC	2 cut(s)	413, 447
BciT130I	CCWGG	2 cut(s)	396, 751
BclI	TGATCA	2 cut(s)	610, 703
BcoDI	GTCTC	4 cut(s)	360, 748, 758, 1125
BfaI	CTAG	4 cut(s)	447, 629, 782, 1161
BfmI	CTRYAG	1 cut(s)	174
BglI	GCCNNNNNGGC	1 cut(s)	860
BglII	AGATCT	1 cut(s)	67
BisI	GCNGC	2 cut(s)	514, 660
BlsI	GCNGC	2 cut(s)	515, 661
Bme1390I	CCNGG	2 cut(s)	396, 751
Bme18I	GGWCC	3 cut(s)	605, 747, 917
BmgT120I	GGNCC	4 cut(s)	605, 747, 852, 917
BmiI	GGNNCC	2 cut(s)	588, 853
BmrFI	CCNGG	2 cut(s)	396, 751
BmsI	GCATC	5 cut(s)	31, 421, 775, 930, 1099
BpiI	GAAGAC	1 cut(s)	96
BplI	GAGNNNNNCTC	2 cut(s)	716, 748
BpmI	CTGGAG	1 cut(s)	772
Bpu10I	CCTNAGC	1 cut(s)	471
BpuEI	CTTGAG	1 cut(s)	1010
BsaJI	CCNNGG	3 cut(s)	394, 621, 993
BsaWI	WCCGGW	1 cut(s)	583
BsaXI	ACNNNNNCTCC	2 cut(s)	1122, 1152
Bsc4I	CCNNNNNNNGG	1 cut(s)	914
Bse1I	ACTGG	1 cut(s)	710
Bse3DI	GCAATG	2 cut(s)	81, 505
BseAI	TCCGGA	1 cut(s)	583
BseBI	CCWGG	2 cut(s)	396, 751
BseDI	CCNNGG	3 cut(s)	394, 621, 993
BseGI	GGATG	3 cut(s)	22, 452, 811
BseLI	CCNNNNNNNGG	1 cut(s)	914
BseMI	GCAATG	2 cut(s)	81, 505
BseMII	CTCAG	5 cut(s)	472, 485, 499, 753, 768
BseNI	ACTGG	1 cut(s)	710
BseRI	GAGGAG	3 cut(s)	29, 32, 893
BseXI	GCAGC	2 cut(s)	500, 671
BseYI	CCCAGC	1 cut(s)	848
BshFI	GGCC	2 cut(s)	504, 854
BsiHKAI	GWGCWC	2 cut(s)	117, 885
BsiSI	CCGG	1 cut(s)	584
BslFI	GGGAC	1 cut(s)	315
BslI	CCNNNNNNNGG	1 cut(s)	914
BsmAI	GTCTC	4 cut(s)	360, 748, 758, 1125
BsmFI	GGGAC	1 cut(s)	315
BsmI	GAATGC	2 cut(s)	441, 891
BsnI	GGCC	2 cut(s)	504, 854
Bsp1286I	GDGCHC	2 cut(s)	117, 885
Bsp13I	TCCGGA	1 cut(s)	583
Bsp1407I	TGTACA	1 cut(s)	1264
Bsp143I	GATC	9 cut(s)	67, 127, 151, 228, 313, 424, 610, 703, 1300
BspACI	CCGC	3 cut(s)	492, 920, 943
BspANI	GGCC	2 cut(s)	504, 854
BspCNI	CTCAG	6 cut(s)	4, 471, 484, 498, 754, 769
BspEI	TCCGGA	1 cut(s)	583
BspLI	GGNNCC	2 cut(s)	588, 853
BspPI	GGATC	5 cut(s)	135, 146, 223, 321, 1295
BsrDI	GCAATG	2 cut(s)	81, 505
BsrGI	TGTACA	1 cut(s)	1264
BsrI	ACTGG	1 cut(s)	710
BssECI	CCNNGG	3 cut(s)	394, 621, 993
BssMI	GATC	9 cut(s)	67, 127, 151, 228, 313, 424, 610, 703, 1300
BssT1I	CCWWGG	2 cut(s)	621, 993
Bst2UI	CCWGG	2 cut(s)	396, 751
Bst4CI	ACNGT	5 cut(s)	298, 329, 769, 914, 1168
Bst6I	CTCTTC	1 cut(s)	739
BstAUI	TGTACA	1 cut(s)	1264
BstC8I	GCNNGC	3 cut(s)	252, 496, 506
BstDEI	CTNAG	6 cut(s)	12, 458, 471, 485, 762, 777
BstF5I	GGATG	3 cut(s)	22, 452, 811
BstKTI	GATC	9 cut(s)	70, 130, 154, 231, 316, 427, 613, 706, 1303
BstMAI	GTCTC	4 cut(s)	360, 748, 758, 1125
BstMBI	GATC	9 cut(s)	67, 127, 151, 228, 313, 424, 610, 703, 1300
BstMWI	GCNNNNNNNGC	6 cut(s)	510, 522, 586, 860, 949, 1226
BstNI	CCWGG	2 cut(s)	396, 751
BstNSI	RCATGY	1 cut(s)	254
BstSCI	CCNGG	2 cut(s)	394, 749
BstSFI	CTRYAG	1 cut(s)	174
BstV1I	GCAGC	2 cut(s)	500, 671
BstV2I	GAAGAC	1 cut(s)	96
BstX2I	RGATCY	4 cut(s)	67, 151, 228, 1300
BstYI	RGATCY	4 cut(s)	67, 151, 228, 1300
BsuRI	GGCC	2 cut(s)	504, 854
BtsCI	GGATG	3 cut(s)	22, 452, 811
BtsIMutI	CAGTG	1 cut(s)	919
Cac8I	GCNNGC	3 cut(s)	252, 496, 506
Cfr13I	GGNCC	4 cut(s)	605, 747, 852, 917
Csp6I	GTAC	2 cut(s)	319, 1265
CviAII	CATG	5 cut(s)	223, 251, 602, 1018, 1262
CviQI	GTAC	2 cut(s)	319, 1265
DdeI	CTNAG	6 cut(s)	12, 458, 471, 485, 762, 777
DpnI	GATC	9 cut(s)	69, 129, 153, 230, 315, 426, 612, 705, 1302
DpnII	GATC	9 cut(s)	67, 127, 151, 228, 313, 424, 610, 703, 1300
Eam1104I	CTCTTC	1 cut(s)	739
EarI	CTCTTC	1 cut(s)	739
Ecl136II	GAGCTC	1 cut(s)	115
Eco130I	CCWWGG	2 cut(s)	621, 993
Eco24I	GRGCYC	1 cut(s)	117
Eco47I	GGWCC	3 cut(s)	605, 747, 917
Eco53kI	GAGCTC	1 cut(s)	115
Eco57I	CTGAAG	3 cut(s)	81, 839, 1317
EcoICRI	GAGCTC	1 cut(s)	115
EcoO109I	RGGNCCY	1 cut(s)	747
EcoRII	CCWGG	2 cut(s)	394, 749
EcoT14I	CCWWGG	2 cut(s)	621, 993
EcoT38I	GRGCYC	1 cut(s)	117
ErhI	CCWWGG	2 cut(s)	621, 993
FaeI	CATG	5 cut(s)	226, 254, 605, 1021, 1265
FalI	AAGNNNNNCTT	2 cut(s)	395, 427
FaqI	GGGAC	1 cut(s)	315
FatI	CATG	5 cut(s)	222, 250, 601, 1017, 1261
FauI	CCCGC	1 cut(s)	936
FbaI	TGATCA	2 cut(s)	610, 703
Fnu4HI	GCNGC	2 cut(s)	514, 660
FokI	GGATG	3 cut(s)	9, 439, 818
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	2 cut(s)	514, 660
FspBI	CTAG	4 cut(s)	447, 629, 782, 1161
GluI	GCNGC	2 cut(s)	514, 660
GsaI	CCCAGC	1 cut(s)	852
GsuI	CTGGAG	1 cut(s)	772
HaeIII	GGCC	2 cut(s)	504, 854
HapII	CCGG	1 cut(s)	584
Hin1II	CATG	5 cut(s)	226, 254, 605, 1021, 1265
HincII	GTYRAC	2 cut(s)	301, 389
HindII	GTYRAC	2 cut(s)	301, 389
HinfI	GANTC	7 cut(s)	56, 101, 288, 756, 810, 1021, 1076
HpaI	GTTAAC	1 cut(s)	301
HpaII	CCGG	1 cut(s)	584
HphI	GGTGA	6 cut(s)	335, 410, 959, 1019, 1061, 1220
Hpy166II	GTNNAC	6 cut(s)	49, 301, 389, 917, 1249, 1267
Hpy188I	TCNGA	8 cut(s)	13, 61, 136, 365, 488, 778, 1297, 1326
Hpy188III	TCNNGA	3 cut(s)	428, 584, 817
Hpy8I	GTNNAC	6 cut(s)	49, 301, 389, 917, 1249, 1267
HpyAV	CCTTC	7 cut(s)	370, 417, 421, 651, 814, 868, 971
HpyCH4III	ACNGT	5 cut(s)	298, 329, 769, 914, 1168
HpyCH4V	TGCA	6 cut(s)	86, 285, 498, 659, 683, 1229
HpyF10VI	GCNNNNNNNGC	6 cut(s)	510, 522, 586, 860, 949, 1226
HpyF3I	CTNAG	6 cut(s)	12, 458, 471, 485, 762, 777
Hsp92II	CATG	5 cut(s)	226, 254, 605, 1021, 1265
Kpn2I	TCCGGA	1 cut(s)	583
Ksp22I	TGATCA	2 cut(s)	610, 703
KspAI	GTTAAC	1 cut(s)	301
Kzo9I	GATC	9 cut(s)	67, 127, 151, 228, 313, 424, 610, 703, 1300
LmnI	GCTCC	5 cut(s)	19, 175, 247, 586, 880
Lsp1109I	GCAGC	2 cut(s)	500, 671
LweI	GCATC	5 cut(s)	31, 421, 775, 930, 1099
MaeI	CTAG	4 cut(s)	447, 629, 782, 1161
MaeIII	GTNAC	4 cut(s)	478, 551, 897, 986
MalI	GATC	9 cut(s)	69, 129, 153, 230, 315, 426, 612, 705, 1302
MboI	GATC	9 cut(s)	67, 127, 151, 228, 313, 424, 610, 703, 1300
MboII	GAAGA	7 cut(s)	74, 77, 96, 726, 805, 1229, 1310
MflI	RGATCY	4 cut(s)	67, 151, 228, 1300
MhlI	GDGCHC	2 cut(s)	117, 885
MluCI	AATT	4 cut(s)	194, 1035, 1119, 1198
MlyI	GAGTC	3 cut(s)	110, 750, 1085
MroI	TCCGGA	1 cut(s)	583
MseI	TTAA	5 cut(s)	213, 300, 324, 698, 1178
MspI	CCGG	1 cut(s)	584
MspR9I	CCNGG	2 cut(s)	396, 751
Mva1269I	GAATGC	2 cut(s)	441, 891
MvaI	CCWGG	2 cut(s)	396, 751
MwoI	GCNNNNNNNGC	6 cut(s)	510, 522, 586, 860, 949, 1226
NdeII	GATC	9 cut(s)	67, 127, 151, 228, 313, 424, 610, 703, 1300
NlaIII	CATG	5 cut(s)	226, 254, 605, 1021, 1265
NlaIV	GGNNCC	2 cut(s)	588, 853
NmuCI	GTSAC	1 cut(s)	897
NspI	RCATGY	1 cut(s)	254
PaeI	GCATGC	1 cut(s)	254
PctI	GAATGC	2 cut(s)	441, 891
PfeI	GAWTC	4 cut(s)	56, 288, 810, 1021
PfoI	TCCNGGA	1 cut(s)	749
PkrI	GCNGC	2 cut(s)	515, 661
PleI	GAGTC	3 cut(s)	109, 750, 1084
PpsI	GAGTC	3 cut(s)	109, 750, 1084
PpuMI	RGGWCCY	1 cut(s)	747
PsiI	TTATAA	1 cut(s)	1149
Psp124BI	GAGCTC	1 cut(s)	117
Psp5II	RGGWCCY	1 cut(s)	747
Psp6I	CCWGG	2 cut(s)	394, 749
PspFI	CCCAGC	1 cut(s)	848
PspGI	CCWGG	2 cut(s)	394, 749
PspN4I	GGNNCC	2 cut(s)	588, 853
PspPI	GGNCC	4 cut(s)	605, 747, 852, 917
PspPPI	RGGWCCY	1 cut(s)	747
PsuI	RGATCY	4 cut(s)	67, 151, 228, 1300
RsaI	GTAC	2 cut(s)	320, 1266
RsaNI	GTAC	2 cut(s)	319, 1265
SacI	GAGCTC	1 cut(s)	117
SaqAI	TTAA	5 cut(s)	213, 300, 324, 698, 1178
SatI	GCNGC	2 cut(s)	514, 660
Sau3AI	GATC	9 cut(s)	67, 127, 151, 228, 313, 424, 610, 703, 1300
Sau96I	GGNCC	4 cut(s)	605, 747, 852, 917
SchI	GAGTC	3 cut(s)	110, 750, 1085
ScrFI	CCNGG	2 cut(s)	396, 751
SduI	GDGCHC	2 cut(s)	117, 885
SfaNI	GCATC	5 cut(s)	31, 421, 775, 930, 1099
SfcI	CTRYAG	1 cut(s)	174
SinI	GGWCC	3 cut(s)	605, 747, 917
SmlI	CTYRAG	1 cut(s)	1025
SmoI	CTYRAG	1 cut(s)	1025
SphI	GCATGC	1 cut(s)	254
Sse9I	AATT	4 cut(s)	194, 1035, 1119, 1198
SsiI	CCGC	3 cut(s)	492, 920, 943
SspMI	CTAG	4 cut(s)	447, 629, 782, 1161
SstI	GAGCTC	1 cut(s)	117
StyD4I	CCNGG	2 cut(s)	394, 749
StyI	CCWWGG	2 cut(s)	621, 993
TaaI	ACNGT	5 cut(s)	298, 329, 769, 914, 1168
TaqI	TCGA	2 cut(s)	423, 1079
TasI	AATT	4 cut(s)	194, 1035, 1119, 1198
TatI	WGTACW	1 cut(s)	1264
TfiI	GAWTC	4 cut(s)	56, 288, 810, 1021
Tru1I	TTAA	5 cut(s)	213, 300, 324, 698, 1178
Tru9I	TTAA	5 cut(s)	213, 300, 324, 698, 1178
TscAI	CASTG	1 cut(s)	919
TseFI	GTSAC	1 cut(s)	897
TseI	GCWGC	2 cut(s)	513, 659
Tsp45I	GTSAC	1 cut(s)	897
TspDTI	ATGAA	5 cut(s)	207, 403, 1034, 1169, 1250
TspRI	CASTG	1 cut(s)	919
VpaK11BI	GGWCC	3 cut(s)	605, 747, 917
XapI	RAATTY	1 cut(s)	194
XceI	RCATGY	1 cut(s)	254
XspI	CTAG	4 cut(s)	447, 629, 782, 1161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.