Rroxscaffold_2G00140980

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0003684
Physical Location & Seq
Forward (+)
79300687 .. 79303916
3230 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00140980.1

Sequence Viewer

Length: 1455 bp
ATGGATTCAGACTCTCTCGCTCTAAATTCACCGCCGCATTTGATCTCCGGCAGCCTTTCTCAGCCCTACGACGTAATGGCGACTTCTGAGGAGGAGCATCCCGCTGATAATGACAATCTTGTGGACAATGATTCTGAAGAAGATCTGTTTGATGACATTGCAGAACAGCATATAGAGTCTTCAAATGAGCTCAAAGTGGTGGATCTCTCCGATGTGGTATGTTCAAATGAGCTCAAAGTGGTGGATCGCTCTGATGTGTTTGGCAGAGATCCTCGCAAAAGAACCGCTCCTGTAGATGTTCCTTATGATGAATTTCCACACAAAAGGTTTAAGCAAAACATGGAGATCCAAGATGTTGTAATGGAGCATGTTCTTTATTTCCTCCCTGCCAAGTCGCTTTGCAGATTCAAAATTGTTAACAAAGAGTGGGATCAGTACATTAACAGTCCCTTTTTCGCTCACCAGCAAACTCACTCCTTCCGAGACATCTCTGGTCTTTTTTGTCAACTCCCTGGTGATAAGCCTTCCTTCATCTCACTCGATCAAGATGCTTATGGCATTCCTAGTCCATCCCTCAGTTTCTTGCCTCAGCCTGTTACTCTCAGAACCGCTTGCAATGGTCTGCTTTGCTGCCAAAACTACTTTGAACAAAATAGCTACTACATTTGTAACCCTGTGAATGAGGAATGGAAAGTGCTTCCGGGGCCAAACTTTTATCATGGACCTGATCAATCAGCCTTGGCACTAGCCTTTGAGCCTTCGGCACTAAACTTTGCAGCACATTTTGAACTTGTGTGTGCATTTTCTCTTTCTTTAACTGATCAACCAGTCATCTGCTTTGAGATATACTCTTCAAGGTCAAGCTCCTGGAGACTCGCTGAGACTGTATGTTCTGAGCTAGATGCCTTGAAGTTGAATGGAGATGGAATCTTCCTGAAGGGTGTAGTCTTTTGGGAAACTTTTGCTGGGGCCATTCTGGCTTTTGACTTGAAGGAGGAGCACTATGGCATTCTGTCACTCCCTCCCAACAGTGGACCGCAAGGTGTTCTAACAGAGATGCGGGGTGAGCTGTGCTATATTCTGCCTGTTAGAGAAGGTAATAGTTACACCTTGGAAATCTATGGTGATATGGACATGAATCTCAAGCATATAATTCCTCTCGATCTTGGTTTTCTTTCTCATGCTCACCAAGAGTCGATAAGGGTTTTGGCTTGTGTGAATGATGATGCTGTGGTAATTCTTGTTGGAGACAGAGTCATTGCTTATAATATGAAAGCTGGGACGGTTGAAACATTAAGGGATATAGTGATTGGTAATTACAATGGTGAATACAATGCTGGATTTGCAAAGTATCTTCCTTATGTGAACAGCCTTGTTCATGTACGCTCATCATACGTAACGAGCCTCCTTTCTGAATATCCTACTACCTCCTATTCCTATCTGAACTCTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

484

Amino Acids

54.31

Weight (kDa)

4.58

Isoelectric Point (pI)

44.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 202 - 369 4.5e-06 F-box associated beta propeller domain
FBA_1 PF07734 203 - 374 6.1e-12 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 203 - 374 8.3e-09 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1266
AccBSI CCGCTC 1 cut(s) 287
AciI CCGC 7 cut(s) 32, 35, 102, 285, 609, 1037, 1060
AclWI GGATC 5 cut(s) 210, 252, 263, 340, 438
AcsI RAATTY 2 cut(s) 25, 311
AcuI CTGAAG 2 cut(s) 156, 956
AfaI GTAC 2 cut(s) 437, 1383
AfiI CCNNNNNNNGG 1 cut(s) 1031
AjnI CCWGG 2 cut(s) 511, 866
AluBI AGCT 7 cut(s) 190, 232, 657, 864, 898, 1069, 1277
AluI AGCT 7 cut(s) 190, 232, 657, 864, 898, 1069, 1277
Alw21I GWGCWC 3 cut(s) 192, 234, 1002
Alw26I GTCTC 4 cut(s) 477, 865, 875, 1242
AlwI GGATC 5 cut(s) 210, 252, 263, 340, 438
AoxI GGCC 2 cut(s) 704, 969
ApeKI GCWGC 3 cut(s) 51, 630, 776
ApoI RAATTY 2 cut(s) 25, 311
AspS9I GGNCC 4 cut(s) 704, 722, 969, 1034
AsuC2I CCSGG 1 cut(s) 702
AsuHPI GGTGA 7 cut(s) 21, 452, 527, 1076, 1136, 1178, 1337
AvaII GGWCC 2 cut(s) 722, 1034
BanII GRGCYC 2 cut(s) 192, 234
BbsI GAAGAC 1 cut(s) 171
Bbv12I GWGCWC 3 cut(s) 192, 234, 1002
BbvCI CCTCAGC 1 cut(s) 588
BbvI GCAGC 3 cut(s) 63, 617, 788
BccI CCATC 2 cut(s) 577, 917
BcgI CGANNNNNNTGC 2 cut(s) 530, 564
BciT130I CCWGG 2 cut(s) 513, 868
BclI TGATCA 2 cut(s) 727, 820
BcnI CCSGG 1 cut(s) 702
BcoDI GTCTC 4 cut(s) 477, 865, 875, 1242
BfaI CTAG 3 cut(s) 564, 746, 899
BfmI CTRYAG 1 cut(s) 291
BglI GCCNNNNNGGC 1 cut(s) 977
BglII AGATCT 1 cut(s) 142
BisI GCNGC 4 cut(s) 35, 52, 631, 777
BlsI GCNGC 4 cut(s) 36, 53, 632, 778
Bme1390I CCNGG 3 cut(s) 513, 702, 868
Bme18I GGWCC 2 cut(s) 722, 1034
BmgT120I GGNCC 4 cut(s) 704, 722, 969, 1034
BmiI GGNNCC 2 cut(s) 705, 970
BmrFI CCNGG 3 cut(s) 513, 702, 868
BmsI GCATC 5 cut(s) 106, 538, 892, 1047, 1216
BpiI GAAGAC 1 cut(s) 171
BplI GAGNNNNNCTC 2 cut(s) 833, 865
BpmI CTGGAG 1 cut(s) 889
Bpu10I CCTNAGC 1 cut(s) 588
BpuEI CTTGAG 1 cut(s) 1127
BpuMI CCSGG 1 cut(s) 702
BsaAI YACGTR 1 cut(s) 1396
BsaJI CCNNGG 4 cut(s) 511, 701, 738, 1110
BsaXI ACNNNNNCTCC 2 cut(s) 1239, 1269
Bsc4I CCNNNNNNNGG 1 cut(s) 1031
Bse1I ACTGG 1 cut(s) 827
Bse3DI GCAATG 3 cut(s) 156, 622, 1257
BseBI CCWGG 2 cut(s) 513, 868
BseDI CCNNGG 4 cut(s) 511, 701, 738, 1110
BseGI GGATG 2 cut(s) 97, 569
BseLI CCNNNNNNNGG 1 cut(s) 1031
BseMI GCAATG 3 cut(s) 156, 622, 1257
BseMII CTCAG 7 cut(s) 74, 78, 589, 602, 616, 870, 885
BseNI ACTGG 1 cut(s) 827
BseRI GAGGAG 3 cut(s) 104, 107, 1010
BseXI GCAGC 3 cut(s) 63, 617, 788
BseYI CCCAGC 2 cut(s) 965, 1277
BshFI GGCC 2 cut(s) 706, 971
BsiHKAI GWGCWC 3 cut(s) 192, 234, 1002
BsiSI CCGG 2 cut(s) 48, 701
BslFI GGGAC 2 cut(s) 432, 1294
BslI CCNNNNNNNGG 1 cut(s) 1031
BsmAI GTCTC 4 cut(s) 477, 865, 875, 1242
BsmFI GGGAC 2 cut(s) 432, 1294
BsmI GAATGC 2 cut(s) 558, 1008
BsnI GGCC 2 cut(s) 706, 971
Bsp1286I GDGCHC 3 cut(s) 192, 234, 1002
BspACI CCGC 7 cut(s) 32, 35, 102, 285, 609, 1037, 1060
BspANI GGCC 2 cut(s) 706, 971
BspCNI CTCAG 7 cut(s) 73, 79, 588, 601, 615, 871, 886
BspLI GGNNCC 2 cut(s) 705, 970
BspPI GGATC 5 cut(s) 210, 252, 263, 340, 438
BsrBI CCGCTC 1 cut(s) 287
BsrDI GCAATG 3 cut(s) 156, 622, 1257
BsrI ACTGG 1 cut(s) 827
BssECI CCNNGG 4 cut(s) 511, 701, 738, 1110
BssT1I CCWWGG 2 cut(s) 738, 1110
Bst2UI CCWGG 2 cut(s) 513, 868
Bst4CI ACNGT 4 cut(s) 446, 886, 1031, 1285
Bst6I CTCTTC 1 cut(s) 856
BstBAI YACGTR 1 cut(s) 1396
BstC8I GCNNGC 1 cut(s) 613
BstDEI CTNAG 7 cut(s) 60, 87, 575, 588, 602, 879, 894
BstF5I GGATG 2 cut(s) 97, 569
BstMAI GTCTC 4 cut(s) 477, 865, 875, 1242
BstMWI GCNNNNNNNGC 4 cut(s) 703, 977, 1066, 1343
BstNI CCWGG 2 cut(s) 513, 868
BstNSI RCATGY 1 cut(s) 371
BstSCI CCNGG 3 cut(s) 511, 700, 866
BstSFI CTRYAG 1 cut(s) 291
BstSNI TACGTA 1 cut(s) 1396
BstV1I GCAGC 3 cut(s) 63, 617, 788
BstV2I GAAGAC 1 cut(s) 171
BstX2I RGATCY 4 cut(s) 142, 202, 268, 345
BstYI RGATCY 4 cut(s) 142, 202, 268, 345
BsuRI GGCC 2 cut(s) 706, 971
BtsCI GGATG 2 cut(s) 97, 569
BtsIMutI CAGTG 1 cut(s) 1036
Cac8I GCNNGC 1 cut(s) 613
Cfr13I GGNCC 4 cut(s) 704, 722, 969, 1034
Csp6I GTAC 2 cut(s) 436, 1382
CviAII CATG 6 cut(s) 340, 368, 719, 1135, 1181, 1379
CviQI GTAC 2 cut(s) 436, 1382
DdeI CTNAG 7 cut(s) 60, 87, 575, 588, 602, 879, 894
Eam1104I CTCTTC 1 cut(s) 856
EarI CTCTTC 1 cut(s) 856
Ecl136II GAGCTC 2 cut(s) 190, 232
Eco105I TACGTA 1 cut(s) 1396
Eco130I CCWWGG 2 cut(s) 738, 1110
Eco24I GRGCYC 2 cut(s) 192, 234
Eco47I GGWCC 2 cut(s) 722, 1034
Eco53kI GAGCTC 2 cut(s) 190, 232
Eco57I CTGAAG 2 cut(s) 156, 956
EcoICRI GAGCTC 2 cut(s) 190, 232
EcoRII CCWGG 2 cut(s) 511, 866
EcoT14I CCWWGG 2 cut(s) 738, 1110
EcoT38I GRGCYC 2 cut(s) 192, 234
ErhI CCWWGG 2 cut(s) 738, 1110
FaeI CATG 6 cut(s) 343, 371, 722, 1138, 1184, 1382
FalI AAGNNNNNCTT 2 cut(s) 512, 544
FaqI GGGAC 2 cut(s) 432, 1294
FatI CATG 6 cut(s) 339, 367, 718, 1134, 1180, 1378
FauI CCCGC 2 cut(s) 109, 1053
FbaI TGATCA 2 cut(s) 727, 820
Fnu4HI GCNGC 4 cut(s) 35, 52, 631, 777
FokI GGATG 2 cut(s) 84, 556
FriOI GRGCYC 2 cut(s) 192, 234
Fsp4HI GCNGC 4 cut(s) 35, 52, 631, 777
FspBI CTAG 3 cut(s) 564, 746, 899
GluI GCNGC 4 cut(s) 35, 52, 631, 777
GsaI CCCAGC 2 cut(s) 969, 1281
GsuI CTGGAG 1 cut(s) 889
HaeIII GGCC 2 cut(s) 706, 971
HapII CCGG 2 cut(s) 48, 701
Hin1II CATG 6 cut(s) 343, 371, 722, 1138, 1184, 1382
HincII GTYRAC 2 cut(s) 418, 506
HindII GTYRAC 2 cut(s) 418, 506
HpaI GTTAAC 1 cut(s) 418
HpaII CCGG 2 cut(s) 48, 701
HphI GGTGA 7 cut(s) 21, 452, 527, 1076, 1136, 1178, 1337
Hpy166II GTNNAC 5 cut(s) 124, 418, 506, 1034, 1366
Hpy188III TCNNGA 3 cut(s) 545, 934, 1160
Hpy8I GTNNAC 5 cut(s) 124, 418, 506, 1034, 1366
Hpy99I CGWCG 1 cut(s) 74
HpyAV CCTTC 7 cut(s) 487, 534, 538, 768, 931, 985, 1088
HpyCH4III ACNGT 4 cut(s) 446, 886, 1031, 1285
HpyCH4IV ACGT 2 cut(s) 72, 1395
HpyCH4V TGCA 6 cut(s) 161, 402, 615, 776, 800, 1346
HpyF10VI GCNNNNNNNGC 4 cut(s) 703, 977, 1066, 1343
HpyF3I CTNAG 7 cut(s) 60, 87, 575, 588, 602, 879, 894
HpySE526I ACGT 2 cut(s) 72, 1395
Hsp92II CATG 6 cut(s) 343, 371, 722, 1138, 1184, 1382
Ksp22I TGATCA 2 cut(s) 727, 820
KspAI GTTAAC 1 cut(s) 418
LmnI GCTCC 5 cut(s) 94, 292, 364, 869, 997
Lsp1109I GCAGC 3 cut(s) 63, 617, 788
LweI GCATC 5 cut(s) 106, 538, 892, 1047, 1216
MaeI CTAG 3 cut(s) 564, 746, 899
MaeII ACGT 2 cut(s) 72, 1395
MaeIII GTNAC 5 cut(s) 595, 668, 1014, 1103, 1396
MbiI CCGCTC 1 cut(s) 287
MboII GAAGA 6 cut(s) 149, 152, 171, 843, 922, 1346
MflI RGATCY 4 cut(s) 142, 202, 268, 345
MhlI GDGCHC 3 cut(s) 192, 234, 1002
MluCI AATT 6 cut(s) 25, 311, 411, 1152, 1236, 1315
MlyI GAGTC 5 cut(s) 5, 185, 867, 1202, 1263
MmeI TCCRAC 1 cut(s) 1225
MseI TTAA 5 cut(s) 330, 417, 441, 815, 1295
MspA1I CMGCKG 1 cut(s) 104
MspI CCGG 2 cut(s) 48, 701
MspR9I CCNGG 3 cut(s) 513, 702, 868
Mva1269I GAATGC 2 cut(s) 558, 1008
MvaI CCWGG 2 cut(s) 513, 868
MwoI GCNNNNNNNGC 4 cut(s) 703, 977, 1066, 1343
NciI CCSGG 1 cut(s) 702
NlaIII CATG 6 cut(s) 343, 371, 722, 1138, 1184, 1382
NlaIV GGNNCC 2 cut(s) 705, 970
NmuCI GTSAC 1 cut(s) 1014
NspI RCATGY 1 cut(s) 371
PctI GAATGC 2 cut(s) 558, 1008
PfeI GAWTC 5 cut(s) 5, 131, 405, 927, 1138
PflFI GACNNNGTC 1 cut(s) 1253
PfoI TCCNGGA 1 cut(s) 866
PkrI GCNGC 4 cut(s) 36, 53, 632, 778
PleI GAGTC 5 cut(s) 5, 184, 867, 1201, 1262
PpsI GAGTC 5 cut(s) 5, 184, 867, 1201, 1262
Ppu21I YACGTR 1 cut(s) 1396
PsiI TTATAA 1 cut(s) 1266
Psp124BI GAGCTC 2 cut(s) 192, 234
Psp6I CCWGG 2 cut(s) 511, 866
PspFI CCCAGC 2 cut(s) 965, 1277
PspGI CCWGG 2 cut(s) 511, 866
PspN4I GGNNCC 2 cut(s) 705, 970
PspPI GGNCC 4 cut(s) 704, 722, 969, 1034
PsuI RGATCY 4 cut(s) 142, 202, 268, 345
PsyI GACNNNGTC 1 cut(s) 1253
RsaI GTAC 2 cut(s) 437, 1383
RsaNI GTAC 2 cut(s) 436, 1382
SacI GAGCTC 2 cut(s) 192, 234
SaqAI TTAA 5 cut(s) 330, 417, 441, 815, 1295
SatI GCNGC 4 cut(s) 35, 52, 631, 777
Sau96I GGNCC 4 cut(s) 704, 722, 969, 1034
SchI GAGTC 5 cut(s) 5, 185, 867, 1202, 1263
ScrFI CCNGG 3 cut(s) 513, 702, 868
SduI GDGCHC 3 cut(s) 192, 234, 1002
SfaNI GCATC 5 cut(s) 106, 538, 892, 1047, 1216
SfcI CTRYAG 1 cut(s) 291
SinI GGWCC 2 cut(s) 722, 1034
SmlI CTYRAG 1 cut(s) 1142
SmoI CTYRAG 1 cut(s) 1142
SnaBI TACGTA 1 cut(s) 1396
Sse9I AATT 6 cut(s) 25, 311, 411, 1152, 1236, 1315
SsiI CCGC 7 cut(s) 32, 35, 102, 285, 609, 1037, 1060
SspMI CTAG 3 cut(s) 564, 746, 899
SstI GAGCTC 2 cut(s) 192, 234
StyD4I CCNGG 3 cut(s) 511, 700, 866
StyI CCWWGG 2 cut(s) 738, 1110
TaaI ACNGT 4 cut(s) 446, 886, 1031, 1285
TaiI ACGT 2 cut(s) 75, 1398
TaqI TCGA 3 cut(s) 540, 1161, 1196
TasI AATT 6 cut(s) 25, 311, 411, 1152, 1236, 1315
TatI WGTACW 1 cut(s) 435
TauI GCSGC 1 cut(s) 37
TfiI GAWTC 5 cut(s) 5, 131, 405, 927, 1138
Tru1I TTAA 5 cut(s) 330, 417, 441, 815, 1295
Tru9I TTAA 5 cut(s) 330, 417, 441, 815, 1295
TscAI CASTG 1 cut(s) 1036
TseFI GTSAC 1 cut(s) 1014
TseI GCWGC 3 cut(s) 51, 630, 776
Tsp45I GTSAC 1 cut(s) 1014
TspDTI ATGAA 5 cut(s) 324, 520, 1151, 1286, 1367
TspRI CASTG 1 cut(s) 1036
Tth111I GACNNNGTC 1 cut(s) 1253
VpaK11BI GGWCC 2 cut(s) 722, 1034
XapI RAATTY 2 cut(s) 25, 311
XceI RCATGY 1 cut(s) 371
XspI CTAG 3 cut(s) 564, 746, 899
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.