Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003684

Physical Location & Seq

Genomic Coordinates Reverse (-)

12880492 .. 12882108

Gene Structure 1617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017105

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGAGTATGTTCTTCCATTCCTCCCTGCCAAAACACTTTGCAGGTTCAGAAGCGTTGGCAAACAGTGGGATGAGTGGATTACCTCTCCTTTTTTCATTCACAAGCAGGCTTACTCCTTCCGGAACATCTCTGGTCTTTTCTGTCAACTTCCTGGGGAAAAGCCTTCTTTTGTCTCGCTCAATAGAGCTGCTTATGGAATTCCCAATCCTTCCCTTAATTTCTTGCCTGAACCAGTTACTGTAAGGACTGCTTGTAATGGCCTGCTCTGCTGCGAAAGTTGCGATGGAGAAAATACTTACTACATTTGCAATCCTGTGAACAAGGAATGGACAGTGCTTCCGAAGTCAAAGCCTTATCATGGACATGAATCAGTTCTAGCACTAGCTTTTGAGCCTTCTGTGCTTGACTTTGAAGAACATTTTCAACTTGTGTGTGCCTTCTCTGTACCTGATGAGCCAGTGATCTGTTTTGATATATACTCTTCAAGTTCGAGGTCTTGGAAACTCTCTCAGACAGAATGCTGTGAGATTGATGCTCTGCATTTGAAAGGTCATGGGATCTTTTTGAAGGGAATGGTATTCTGGGAAACTCTTACTGGCGCAATTTTGGCTTTTAATCTGAAGGAGGAGCAATATGGTATTTTGCCTCTCCCTCCTTGCAGCGGACCACTAGGTGTTATGGCAGAGATGTACGGTGAGCTGTGTTATATTCTGCCTGTTCTGGAAGACTATGTATACACCTTGGAGATCTATGGTGATATGGACATGAAACTGAAGCGCATAATTCCTCTTGCTGATGGTATTTTCACCGATGCTTATGAAGAGTTGAGGGCTTTGGCTTGTGTAACTGATGATGTGGTGATCATGCTTCTTGGAATGAAATTGATTGCTTATCATGTGAAAGCAGAGAAGGCTGATATCATACATAGTTATACTGGGATTATTGCTGGATATGCAGGGTTGATAATGCTTGATAGTCCTAGTGGCTTTGACAGTAGTCGTTTTAGGAGAATCATATGCTTCCCAACCCCGCCTCCTACCGCGGCCATCATGGATGCTAAGAATGTCACGATGCAGCACGTTCTTCCTTTACTTCGAGCCAACGTACTTTGCAGGTTCAGAAGTGTTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

378

Amino Acids

42.32

Weight (kDa)

5.43

Isoelectric Point (pI)

45.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	80 - 218	1.4e-06	F-box associated beta propeller domain
b-prop_At3g26010-like	PF24750	81 - 199	1.6e-08	F-box protein At3g26010-like, beta-propeller
FBA_1	PF07734	83 - 218	1.1e-10	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003684)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13470 FvH4_1g13470 FvH4_1g13480 FvH4_1g13480 FvH4_1g13480
malus_domestica	MD02G1150100.v1.1 MD02G1150200.v1.1
prunus_persica	Prupe.7G152900_v2.0.a1 Prupe.7G153000_v2.0.a1 Prupe.7G153000_v2.0.a1
pyrus_communis	pycom02g11790 pycom02g11800 pycom15g23040
rosa_chinensis	RchiOBHm_Chr2g0101851 RchiOBHm_Chr2g0101871
rosa_laevigata	RLG00000017105 RLG00000017106
rosa_multiflora	Rmu_sc0000838.1_g000007 Rmu_sc0000838.1_g000009
rosa_roxburghii	Rroxscaffold_2G00140980 Rroxscaffold_2G00140990
rosa_rugosa	Rorug02G0102400 Rorug02G0102600 Rorug02G0102700 Rorug02G0102800
rosa_samantha	Rh2AG149900 Rh2AG150000 Rh2BG155400 Rh2BG155600 Rh2CG155800 Rh2CG155900 Rh2DG155600 Rh2DG155700
rosa_wichuraiana	Rw2G011730 Rw2G011740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	33, 1104
AccI	GTMKAC	1 cut(s)	735
AccII	CGCG	1 cut(s)	1043
AccIII	TCCGGA	1 cut(s)	120
AciI	CCGC	4 cut(s)	663, 1031, 1041, 1043
AclWI	GGATC	1 cut(s)	566
AcoI	YGGCCR	1 cut(s)	1044
AcsI	RAATTY	1 cut(s)	198
AcuI	CTGAAG	2 cut(s)	641, 794
AdeI	CACNNNGTG	1 cut(s)	674
AfaI	GTAC	3 cut(s)	447, 692, 1107
AfiI	CCNNNNNNNGG	2 cut(s)	359, 662
AgsI	TTSAA	5 cut(s)	413, 425, 486, 547, 568
AjnI	CCWGG	1 cut(s)	151
AluBI	AGCT	4 cut(s)	188, 386, 700, 1131
AluI	AGCT	4 cut(s)	188, 386, 700, 1131
Alw26I	GTCTC	1 cut(s)	178
AlwI	GGATC	1 cut(s)	566
AlwNI	CAGNNNCTG	1 cut(s)	239
Aor13HI	TCCGGA	1 cut(s)	120
AoxI	GGCC	2 cut(s)	259, 1044
ApeKI	GCWGC	4 cut(s)	188, 270, 660, 1075
ApoI	RAATTY	1 cut(s)	198
Asp700I	GAANNNNTTC	2 cut(s)	372, 420
AspLEI	GCGC	2 cut(s)	602, 780
AspS9I	GGNCC	1 cut(s)	665
AsuHPI	GGTGA	4 cut(s)	707, 767, 799, 871
AvaII	GGWCC	1 cut(s)	665
BbsI	GAAGAC	1 cut(s)	732
BbvI	GCAGC	4 cut(s)	175, 257, 672, 1087
BccI	CCATC	3 cut(s)	278, 791, 1055
BciT130I	CCWGG	1 cut(s)	153
BclI	TGATCA	1 cut(s)	861
BcoDI	GTCTC	1 cut(s)	178
BfaI	CTAG	5 cut(s)	377, 383, 671, 981, 1132
BfuAI	ACCTGC	2 cut(s)	33, 1104
BglII	AGATCT	1 cut(s)	747
BisI	GCNGC	5 cut(s)	189, 271, 661, 1044, 1076
BlsI	GCNGC	5 cut(s)	190, 272, 662, 1045, 1077
Bme1390I	CCNGG	1 cut(s)	153
Bme18I	GGWCC	1 cut(s)	665
BmgT120I	GGNCC	1 cut(s)	665
BmrFI	CCNGG	1 cut(s)	153
BmrI	ACTGGG	1 cut(s)	945
BmsI	GCATC	4 cut(s)	523, 802, 1045, 1062
BmuI	ACTGGG	1 cut(s)	945
BoxI	GACNNNNGTC	1 cut(s)	996
BpiI	GAAGAC	1 cut(s)	732
BsaJI	CCNNGG	3 cut(s)	152, 741, 1041
BsaWI	WCCGGW	1 cut(s)	120
BsaXI	ACNNNNNCTCC	2 cut(s)	1018, 1048
Bsc4I	CCNNNNNNNGG	2 cut(s)	359, 662
Bse1I	ACTGG	4 cut(s)	233, 458, 601, 940
BseAI	TCCGGA	1 cut(s)	120
BseBI	CCWGG	1 cut(s)	153
BseDI	CCNNGG	3 cut(s)	152, 741, 1041
BseGI	GGATG	2 cut(s)	76, 1060
BseLI	CCNNNNNNNGG	2 cut(s)	359, 662
BseMII	CTCAG	1 cut(s)	524
BseNI	ACTGG	4 cut(s)	233, 458, 601, 940
BseRI	GAGGAG	1 cut(s)	641
BseXI	GCAGC	4 cut(s)	175, 257, 672, 1087
Bsh1236I	CGCG	1 cut(s)	1043
BshFI	GGCC	2 cut(s)	261, 1046
BsiSI	CCGG	1 cut(s)	121
BslI	CCNNNNNNNGG	2 cut(s)	359, 662
BsmAI	GTCTC	1 cut(s)	178
BsmI	GAATGC	1 cut(s)	524
BsnI	GGCC	2 cut(s)	261, 1046
Bsp13I	TCCGGA	1 cut(s)	120
Bsp143I	GATC	4 cut(s)	462, 558, 747, 861
BspACI	CCGC	4 cut(s)	663, 1031, 1041, 1043
BspANI	GGCC	2 cut(s)	261, 1046
BspCNI	CTCAG	1 cut(s)	523
BspEI	TCCGGA	1 cut(s)	120
BspFNI	CGCG	1 cut(s)	1043
BspMI	ACCTGC	2 cut(s)	33, 1104
BspPI	GGATC	1 cut(s)	566
BsrI	ACTGG	4 cut(s)	233, 458, 601, 940
BssECI	CCNNGG	3 cut(s)	152, 741, 1041
BssMI	GATC	4 cut(s)	462, 558, 747, 861
BssNAI	GTATAC	1 cut(s)	736
BssT1I	CCWWGG	1 cut(s)	741
Bst1107I	GTATAC	1 cut(s)	736
Bst2UI	CCWGG	1 cut(s)	153
Bst4CI	ACNGT	5 cut(s)	66, 241, 334, 695, 995
Bst6I	CTCTTC	2 cut(s)	487, 816
BstC8I	GCNNGC	2 cut(s)	108, 263
BstDEI	CTNAG	2 cut(s)	510, 1059
BstDSI	CCRYGG	1 cut(s)	1041
BstF5I	GGATG	2 cut(s)	76, 1060
BstFNI	CGCG	1 cut(s)	1043
BstHHI	GCGC	2 cut(s)	602, 780
BstKTI	GATC	4 cut(s)	465, 561, 750, 864
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	4 cut(s)	462, 558, 747, 861
BstMWI	GCNNNNNNNGC	6 cut(s)	267, 279, 400, 608, 911, 953
BstNI	CCWGG	1 cut(s)	153
BstPAI	GACNNNNGTC	1 cut(s)	996
BstSCI	CCNGG	1 cut(s)	151
BstUI	CGCG	1 cut(s)	1043
BstV1I	GCAGC	4 cut(s)	175, 257, 672, 1087
BstV2I	GAAGAC	1 cut(s)	732
BstX2I	RGATCY	2 cut(s)	558, 747
BstYI	RGATCY	2 cut(s)	558, 747
BstZ17I	GTATAC	1 cut(s)	736
BsuRI	GGCC	2 cut(s)	261, 1046
BtgI	CCRYGG	1 cut(s)	1041
BtgZI	GCGATG	1 cut(s)	297
BtsCI	GGATG	2 cut(s)	76, 1060
BtsIMutI	CAGTG	3 cut(s)	71, 339, 465
BveI	ACCTGC	2 cut(s)	33, 1104
Cac8I	GCNNGC	2 cut(s)	108, 263
CaiI	CAGNNNCTG	1 cut(s)	239
CfoI	GCGC	2 cut(s)	602, 780
Cfr13I	GGNCC	1 cut(s)	665
Cfr42I	CCGCGG	1 cut(s)	1044
Csp6I	GTAC	3 cut(s)	446, 691, 1106
CviAII	CATG	7 cut(s)	359, 365, 554, 766, 865, 896, 1051
CviQI	GTAC	3 cut(s)	446, 691, 1106
DdeI	CTNAG	2 cut(s)	510, 1059
DpnI	GATC	4 cut(s)	464, 560, 749, 863
DpnII	GATC	4 cut(s)	462, 558, 747, 861
DraIII	CACNNNGTG	1 cut(s)	674
EaeI	YGGCCR	1 cut(s)	1044
Eam1104I	CTCTTC	2 cut(s)	487, 816
EarI	CTCTTC	2 cut(s)	487, 816
Eco130I	CCWWGG	1 cut(s)	741
Eco32I	GATATC	1 cut(s)	919
Eco47I	GGWCC	1 cut(s)	665
Eco57I	CTGAAG	2 cut(s)	641, 794
EcoRI	GAATTC	1 cut(s)	198
EcoRII	CCWGG	1 cut(s)	151
EcoRV	GATATC	1 cut(s)	919
EcoT14I	CCWWGG	1 cut(s)	741
ErhI	CCWWGG	1 cut(s)	741
FaeI	CATG	7 cut(s)	362, 368, 557, 769, 868, 899, 1054
FalI	AAGNNNNNCTT	2 cut(s)	235, 267
FatI	CATG	7 cut(s)	358, 364, 553, 765, 864, 895, 1050
FauI	CCCGC	1 cut(s)	1038
FauNDI	CATATG	1 cut(s)	1016
FbaI	TGATCA	1 cut(s)	861
FblI	GTMKAC	1 cut(s)	735
Fnu4HI	GCNGC	5 cut(s)	189, 271, 661, 1044, 1076
FokI	GGATG	2 cut(s)	83, 1067
Fsp4HI	GCNGC	5 cut(s)	189, 271, 661, 1044, 1076
FspBI	CTAG	5 cut(s)	377, 383, 671, 981, 1132
GlaI	GCGC	2 cut(s)	601, 779
GluI	GCNGC	5 cut(s)	189, 271, 661, 1044, 1076
HaeIII	GGCC	2 cut(s)	261, 1046
HapII	CCGG	1 cut(s)	121
HhaI	GCGC	2 cut(s)	602, 780
Hin1II	CATG	7 cut(s)	362, 368, 557, 769, 868, 899, 1054
Hin6I	GCGC	2 cut(s)	600, 778
HinP1I	GCGC	2 cut(s)	600, 778
HincII	GTYRAC	1 cut(s)	146
HindII	GTYRAC	1 cut(s)	146
HinfI	GANTC	2 cut(s)	368, 1011
HpaII	CCGG	1 cut(s)	121
HphI	GGTGA	4 cut(s)	707, 767, 799, 871
Hpy166II	GTNNAC	3 cut(s)	146, 319, 736
Hpy188I	TCNGA	5 cut(s)	50, 342, 513, 621, 1121
Hpy188III	TCNNGA	3 cut(s)	121, 722, 1069
Hpy8I	GTNNAC	3 cut(s)	146, 319, 736
HpyAV	CCTTC	8 cut(s)	127, 174, 219, 405, 448, 562, 616, 904
HpyCH4III	ACNGT	5 cut(s)	66, 241, 334, 695, 995
HpyCH4IV	ACGT	2 cut(s)	1080, 1104
HpyCH4V	TGCA	7 cut(s)	42, 309, 541, 660, 956, 1075, 1113
HpyF10VI	GCNNNNNNNGC	6 cut(s)	267, 279, 400, 608, 911, 953
HpyF3I	CTNAG	2 cut(s)	510, 1059
HpySE526I	ACGT	2 cut(s)	1080, 1104
Hsp92II	CATG	7 cut(s)	362, 368, 557, 769, 868, 899, 1054
HspAI	GCGC	2 cut(s)	600, 778
Kpn2I	TCCGGA	1 cut(s)	120
Ksp22I	TGATCA	1 cut(s)	861
KspI	CCGCGG	1 cut(s)	1044
Kzo9I	GATC	4 cut(s)	462, 558, 747, 861
LmnI	GCTCC	1 cut(s)	628
Lsp1109I	GCAGC	4 cut(s)	175, 257, 672, 1087
LweI	GCATC	4 cut(s)	523, 802, 1045, 1062
MaeI	CTAG	5 cut(s)	377, 383, 671, 981, 1132
MaeII	ACGT	2 cut(s)	1080, 1104
MaeIII	GTNAC	3 cut(s)	235, 844, 1066
MalI	GATC	4 cut(s)	464, 560, 749, 863
MboI	GATC	4 cut(s)	462, 558, 747, 861
MboII	GAAGA	6 cut(s)	5, 425, 474, 737, 833, 1076
MflI	RGATCY	2 cut(s)	558, 747
MluCI	AATT	5 cut(s)	198, 217, 603, 783, 881
MnlI	CCTC	9 cut(s)	32, 94, 486, 619, 657, 663, 798, 822, 1044
MroI	TCCGGA	1 cut(s)	120
MroXI	GAANNNNTTC	2 cut(s)	372, 420
MseI	TTAA	2 cut(s)	216, 615
MslI	CAYNNNNRTG	1 cut(s)	363
MspA1I	CMGCKG	2 cut(s)	663, 1043
MspI	CCGG	1 cut(s)	121
MspR9I	CCNGG	1 cut(s)	153
Mva1269I	GAATGC	1 cut(s)	524
MvaI	CCWGG	1 cut(s)	153
MvnI	CGCG	1 cut(s)	1043
MwoI	GCNNNNNNNGC	6 cut(s)	267, 279, 400, 608, 911, 953
NdeI	CATATG	1 cut(s)	1016
NdeII	GATC	4 cut(s)	462, 558, 747, 861
NlaIII	CATG	7 cut(s)	362, 368, 557, 769, 868, 899, 1054
NmuCI	GTSAC	1 cut(s)	1066
PctI	GAATGC	1 cut(s)	524
PdmI	GAANNNNTTC	2 cut(s)	372, 420
PfeI	GAWTC	2 cut(s)	368, 1011
PkrI	GCNGC	5 cut(s)	190, 272, 662, 1045, 1077
PshAI	GACNNNNGTC	1 cut(s)	996
Psp6I	CCWGG	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	151
PspPI	GGNCC	1 cut(s)	665
PstNI	CAGNNNCTG	1 cut(s)	239
PsuI	RGATCY	2 cut(s)	558, 747
RsaI	GTAC	3 cut(s)	447, 692, 1107
RsaNI	GTAC	3 cut(s)	446, 691, 1106
RseI	CAYNNNNRTG	1 cut(s)	363
SacII	CCGCGG	1 cut(s)	1044
SaqAI	TTAA	2 cut(s)	216, 615
SatI	GCNGC	5 cut(s)	189, 271, 661, 1044, 1076
Sau3AI	GATC	4 cut(s)	462, 558, 747, 861
Sau96I	GGNCC	1 cut(s)	665
ScrFI	CCNGG	1 cut(s)	153
SfaNI	GCATC	4 cut(s)	523, 802, 1045, 1062
Sfr303I	CCGCGG	1 cut(s)	1044
SgrBI	CCGCGG	1 cut(s)	1044
SinI	GGWCC	1 cut(s)	665
SmiMI	CAYNNNNRTG	1 cut(s)	363
Sse9I	AATT	5 cut(s)	198, 217, 603, 783, 881
SsiI	CCGC	4 cut(s)	663, 1031, 1041, 1043
SspMI	CTAG	5 cut(s)	377, 383, 671, 981, 1132
StyD4I	CCNGG	1 cut(s)	151
StyI	CCWWGG	1 cut(s)	741
TaaI	ACNGT	5 cut(s)	66, 241, 334, 695, 995
TaiI	ACGT	2 cut(s)	1083, 1107
TaqI	TCGA	2 cut(s)	491, 1096
TasI	AATT	5 cut(s)	198, 217, 603, 783, 881
TauI	GCSGC	1 cut(s)	1046
TfiI	GAWTC	2 cut(s)	368, 1011
Tru1I	TTAA	2 cut(s)	216, 615
Tru9I	TTAA	2 cut(s)	216, 615
TscAI	CASTG	3 cut(s)	71, 339, 465
TseFI	GTSAC	1 cut(s)	1066
TseI	GCWGC	4 cut(s)	188, 270, 660, 1075
Tsp45I	GTSAC	1 cut(s)	1066
TspDTI	ATGAA	5 cut(s)	85, 381, 782, 834, 893
TspRI	CASTG	3 cut(s)	71, 339, 465
VpaK11BI	GGWCC	1 cut(s)	665
XapI	RAATTY	1 cut(s)	198
XmiI	GTMKAC	1 cut(s)	735
XmnI	GAANNNNTTC	2 cut(s)	372, 420
XspI	CTAG	5 cut(s)	377, 383, 671, 981, 1132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.