Rorug02G0102400

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003684
Physical Location & Seq
Reverse (-)
8747078 .. 8747371
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0102400.1

Sequence Viewer

Length: 294 bp
ATGTTGTTTCAATCTACTTTGGCTACACCTCGTAGTACTGTATTGAGGGGTAGGGCAGTTTGGTCACCACCTCCTTCCGGCTGGCTTAAGGCCAACTGTGATGGAGCCTTTGATTCCTCCTCCAAATCTGGTGGAGTAGGAGTGGTTCTTCGTGATGCTATGGGGGATATTGTTGGTGGAATTTGTTTAAAGGTCAACTATGTTGCCTCTCCAGATATTGTTGAGGCCATGGCTTGTAGGGCTGCTTGTTCATTGGTAGTACATTATCATCTTTCTCCTATATATTATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

97

Amino Acids

10.22

Weight (kDa)

8.43

Isoelectric Point (pI)

64.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 32 - 92 1e-08 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 180
AfaI GTAC 2 cut(s) 37, 261
AfiI CCNNNNNNNGG 1 cut(s) 77
AflII CTTAAG 1 cut(s) 86
AgsI TTSAA 1 cut(s) 11
AoxI GGCC 2 cut(s) 90, 225
ApeKI GCWGC 1 cut(s) 242
ApoI RAATTY 1 cut(s) 180
AsuHPI GGTGA 1 cut(s) 57
BbvI GCAGC 1 cut(s) 229
BccI CCATC 1 cut(s) 95
BfrI CTTAAG 1 cut(s) 86
BisI GCNGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 244
BmcAI AGTACT 1 cut(s) 37
BmiI GGNNCC 1 cut(s) 106
BmsI GCATC 1 cut(s) 145
BpmI CTGGAG 1 cut(s) 195
BsaJI CCNNGG 1 cut(s) 228
BsaXI ACNNNNNCTCC 2 cut(s) 126, 156
Bsc4I CCNNNNNNNGG 1 cut(s) 77
BseDI CCNNGG 1 cut(s) 228
BseLI CCNNNNNNNGG 1 cut(s) 77
BseRI GAGGAG 1 cut(s) 109
BseXI GCAGC 1 cut(s) 229
BshFI GGCC 2 cut(s) 92, 227
BsiSI CCGG 1 cut(s) 78
BslI CCNNNNNNNGG 1 cut(s) 77
BsnI GGCC 2 cut(s) 92, 227
Bsp19I CCATGG 1 cut(s) 228
BspANI GGCC 2 cut(s) 92, 227
BspLI GGNNCC 1 cut(s) 106
BspTI CTTAAG 1 cut(s) 86
BssECI CCNNGG 1 cut(s) 228
BssT1I CCWWGG 1 cut(s) 228
Bst4CI ACNGT 2 cut(s) 40, 98
BstAFI CTTAAG 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 83
BstDSI CCRYGG 1 cut(s) 228
BstEII GGTNACC 1 cut(s) 63
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstPI GGTNACC 1 cut(s) 63
BstV1I GCAGC 1 cut(s) 229
BsuRI GGCC 2 cut(s) 92, 227
BtgI CCRYGG 1 cut(s) 228
Cac8I GCNNGC 1 cut(s) 83
Csp6I GTAC 2 cut(s) 36, 260
CspCI CAANNNNNGTGG 2 cut(s) 112, 147
CviAII CATG 1 cut(s) 229
CviJI RGCY 8 cut(s) 23, 81, 85, 92, 107, 227, 233, 242
CviKI_1 RGCY 8 cut(s) 23, 81, 85, 92, 107, 227, 233, 242
CviQI GTAC 2 cut(s) 36, 260
DraI TTTAAA 1 cut(s) 189
Eco130I CCWWGG 1 cut(s) 228
Eco91I GGTNACC 1 cut(s) 63
EcoO65I GGTNACC 1 cut(s) 63
EcoT14I CCWWGG 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 1 cut(s) 232
FaiI YATR 6 cut(s) 161, 201, 230, 281, 283, 288
FatI CATG 1 cut(s) 228
Fnu4HI GCNGC 1 cut(s) 243
Fsp4HI GCNGC 1 cut(s) 243
GluI GCNGC 1 cut(s) 243
GsuI CTGGAG 1 cut(s) 195
HaeIII GGCC 2 cut(s) 92, 227
HapII CCGG 1 cut(s) 78
Hin1II CATG 1 cut(s) 232
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HinfI GANTC 1 cut(s) 113
HpaII CCGG 1 cut(s) 78
HphI GGTGA 1 cut(s) 57
Hpy166II GTNNAC 1 cut(s) 196
Hpy188III TCNNGA 2 cut(s) 152, 212
Hpy8I GTNNAC 1 cut(s) 196
HpyAV CCTTC 1 cut(s) 84
HpyCH4III ACNGT 2 cut(s) 40, 98
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
Hsp92II CATG 1 cut(s) 232
LmnI GCTCC 1 cut(s) 104
LpnPI CCDG 4 cut(s) 67, 91, 114, 225
Lsp1109I GCAGC 1 cut(s) 229
LweI GCATC 1 cut(s) 145
MaeIII GTNAC 1 cut(s) 63
MboII GAAGA 1 cut(s) 140
MluCI AATT 1 cut(s) 180
MnlI CCTC 7 cut(s) 39, 39, 81, 127, 130, 217, 217
MseI TTAA 2 cut(s) 87, 188
MspCI CTTAAG 1 cut(s) 86
MspI CCGG 1 cut(s) 78
MwoI GCNNNNNNNGC 1 cut(s) 239
NcoI CCATGG 1 cut(s) 228
NlaIII CATG 1 cut(s) 232
NlaIV GGNNCC 1 cut(s) 106
NmuCI GTSAC 1 cut(s) 63
PfeI GAWTC 1 cut(s) 113
PkrI GCNGC 1 cut(s) 244
PspEI GGTNACC 1 cut(s) 63
PspN4I GGNNCC 1 cut(s) 106
PsrI GAACNNNNNNTAC 2 cut(s) 129, 161
RsaI GTAC 2 cut(s) 37, 261
RsaNI GTAC 2 cut(s) 36, 260
SaqAI TTAA 2 cut(s) 87, 188
SatI GCNGC 1 cut(s) 243
ScaI AGTACT 1 cut(s) 37
SetI ASST 3 cut(s) 31, 73, 195
SfaNI GCATC 1 cut(s) 145
SgeI CNNG 9 cut(s) 42, 90, 94, 141, 164, 224, 241, 246, 258
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 1 cut(s) 180
StyI CCWWGG 1 cut(s) 228
TaaI ACNGT 2 cut(s) 40, 98
TasI AATT 1 cut(s) 180
TatI WGTACW 2 cut(s) 35, 259
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 2 cut(s) 87, 188
Tru9I TTAA 2 cut(s) 87, 188
TseFI GTSAC 1 cut(s) 63
TseI GCWGC 1 cut(s) 242
Tsp45I GTSAC 1 cut(s) 63
TspDTI ATGAA 1 cut(s) 240
Vha464I CTTAAG 1 cut(s) 86
XapI RAATTY 1 cut(s) 180
ZrmI AGTACT 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.