Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003684

Physical Location & Seq

Genomic Coordinates Reverse (-)

13022499 .. 13025815

Gene Structure 3317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG155700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGAACTCATTACGATTTGTCATTTTTGCAGTAATGGCGACTTCTGAGGAGGAGCATCCCGTTGATAATGACAATCTTGTGGACAATGATTCTGAAGAAGATCTGTTTGATGACATTGCAGAACAGCATATAGAGTCTTCAAATGAGCTCAAAGTGGTGGATCGCTCTGATGTGTTTGGCAGAGATCCTCGCAAAAGAACTGCTCCTGTAGATGTTCCTTATGATGAATTTCCACACAAAAGGTTTAAGCAAAACATGGAGATCCAAGATGTTGTAATGGAGCATGCTCTTTATTTCCTCCCTGCCAAGTCGCTTTGCAGATTCAAAACTGTTAACAAAGAGTGGGATCGGTACATTAACAGTCCCTTTTTCGCTCACCAGCAAACTCACTCCTTCCGAGACATCTCTGGTCTTTTTTGTCAACTCCCTGGTGATAAGCCTTCCTTCATATCACTCGATCAAGATGCTTATGGCATTCCTAGTCCATCCCTCAGTTTCTTGCCTCAGCCTGTTACTCTCAGAACCGCTTGCAATGGCCTGCTTTGCTGCCAAAACTGCTTTGAACAAAATAGCTACTACATTTGTAACCCTGTGAATGAGGAATGGAAAGTGCTTCCGGAGCCAAACTTTTATCATGGACCTGATCAATCAGCCTTGGCACTAGCCTTTGAGCCTTCGGCACTAAACTTTGCAGCACATTTTGAACTTGTGTGTGCATTTTCTCTATCTTTAACTGATCAACCAGTCATCTGCTTTGAGATATACTCTTCAAGGTCAAGGTCCTGGAGACTCGCTGAGACTGTATGTTCTGAGCTAGATGCCTTGAAGTTGAATGGGGATGGAATCTTCCTGAAGGGTGTAGTCTTTTGGGAAACTTTTGCTGGGGCCATTCTGGCTTTTGACTTGAAGGAGGAGCACTATGGCATTCTGTCACTTCCTCCCAACAGTGGACCGCAAGGTGTTCTAACAGAGATGCGGGGTGAGCTGTGCTATATTCTGCCTGTTAGAGAAGGTAATAGTTACACCTTGGAAATCTATGGTGATATGGACATGAATCTCAAGCATATAATTCCTCTCAATCTTGGTTTTCTTTCTCATACTCACCAAGAGTCGATAAGGGTTTTGGCTTGTGTGAATGATGATGCTGTGGTAATTCTTTTTGGAGACAGAGTGATTGCTTATAATATGAAAGCTAGGACGGTTGAAACATTAAGGGATATAGTGAATGGTAATTACAATGGTGAATACAATGCTGGATTTGCAAAGTATCTTCCTTATGTGAACAGCCTTGTTCATGTACACTCATCATACATAACGAGCCTCCTTTCTGAAGATCCTACTACCTCCTATTCCTATCTGAAGTCTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

456

Amino Acids

51.69

Weight (kDa)

4.82

Isoelectric Point (pI)

44.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	174 - 343	9.4e-07	F-box associated beta propeller domain
FBA_1	PF07734	175 - 346	5.2e-12	F-box associated beta propeller domain
b-prop_At3g26010-like	PF24750	175 - 346	5.6e-09	F-box protein At3g26010-like, beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003684)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13470 FvH4_1g13470 FvH4_1g13480 FvH4_1g13480 FvH4_1g13480
malus_domestica	MD02G1150100.v1.1 MD02G1150200.v1.1
prunus_persica	Prupe.7G152900_v2.0.a1 Prupe.7G153000_v2.0.a1 Prupe.7G153000_v2.0.a1
pyrus_communis	pycom02g11790 pycom02g11800 pycom15g23040
rosa_chinensis	RchiOBHm_Chr2g0101851 RchiOBHm_Chr2g0101871
rosa_laevigata	RLG00000017105 RLG00000017106
rosa_multiflora	Rmu_sc0000838.1_g000007 Rmu_sc0000838.1_g000009
rosa_roxburghii	Rroxscaffold_2G00140980 Rroxscaffold_2G00140990
rosa_rugosa	Rorug02G0102400 Rorug02G0102600 Rorug02G0102700 Rorug02G0102800
rosa_samantha	Rh2AG149900 Rh2AG150000 Rh2BG155400 Rh2BG155600 Rh2CG155800 Rh2CG155900 Rh2DG155600 Rh2DG155700
rosa_wichuraiana	Rw2G011730 Rw2G011740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1182
AccIII	TCCGGA	1 cut(s)	616
AciI	CCGC	3 cut(s)	525, 953, 976
AclWI	GGATC	5 cut(s)	168, 179, 256, 354, 1328
AcsI	RAATTY	1 cut(s)	227
AcuI	CTGAAG	3 cut(s)	114, 872, 1350
AfaI	GTAC	2 cut(s)	353, 1299
AfiI	CCNNNNNNNGG	1 cut(s)	947
AgsI	TTSAA	9 cut(s)	141, 325, 563, 704, 771, 826, 832, 907, 1205
AjnI	CCWGG	2 cut(s)	427, 782
AluBI	AGCT	5 cut(s)	148, 573, 814, 985, 1193
AluI	AGCT	5 cut(s)	148, 573, 814, 985, 1193
Alw21I	GWGCWC	2 cut(s)	150, 918
Alw26I	GTCTC	4 cut(s)	393, 781, 791, 1158
AlwI	GGATC	5 cut(s)	168, 179, 256, 354, 1328
Aor13HI	TCCGGA	1 cut(s)	616
AoxI	GGCC	2 cut(s)	535, 885
ApeKI	GCWGC	2 cut(s)	546, 692
ApoI	RAATTY	1 cut(s)	227
AspS9I	GGNCC	4 cut(s)	638, 780, 885, 950
AsuHPI	GGTGA	6 cut(s)	368, 443, 992, 1052, 1094, 1253
AvaII	GGWCC	3 cut(s)	638, 780, 950
BanII	GRGCYC	1 cut(s)	150
BbsI	GAAGAC	1 cut(s)	129
Bbv12I	GWGCWC	2 cut(s)	150, 918
BbvCI	CCTCAGC	1 cut(s)	504
BbvI	GCAGC	2 cut(s)	533, 704
BccI	CCATC	2 cut(s)	493, 833
BcgI	CGANNNNNNTGC	2 cut(s)	446, 480
BciT130I	CCWGG	2 cut(s)	429, 784
BclI	TGATCA	2 cut(s)	643, 736
BcoDI	GTCTC	4 cut(s)	393, 781, 791, 1158
BfaI	CTAG	4 cut(s)	480, 662, 815, 1194
BfmI	CTRYAG	1 cut(s)	207
BglI	GCCNNNNNGGC	1 cut(s)	893
BglII	AGATCT	1 cut(s)	100
BisI	GCNGC	2 cut(s)	547, 693
BlsI	GCNGC	2 cut(s)	548, 694
Bme1390I	CCNGG	2 cut(s)	429, 784
Bme18I	GGWCC	3 cut(s)	638, 780, 950
BmgT120I	GGNCC	4 cut(s)	638, 780, 885, 950
BmiI	GGNNCC	2 cut(s)	621, 886
BmrFI	CCNGG	2 cut(s)	429, 784
BmsI	GCATC	5 cut(s)	64, 454, 808, 963, 1132
BpiI	GAAGAC	1 cut(s)	129
BplI	GAGNNNNNCTC	2 cut(s)	749, 781
BpmI	CTGGAG	1 cut(s)	805
Bpu10I	CCTNAGC	1 cut(s)	504
BpuEI	CTTGAG	1 cut(s)	1043
BsaJI	CCNNGG	3 cut(s)	427, 654, 1026
BsaWI	WCCGGW	1 cut(s)	616
BsaXI	ACNNNNNCTCC	2 cut(s)	1155, 1185
Bsc4I	CCNNNNNNNGG	1 cut(s)	947
Bse1I	ACTGG	1 cut(s)	743
Bse3DI	GCAATG	2 cut(s)	114, 538
BseAI	TCCGGA	1 cut(s)	616
BseBI	CCWGG	2 cut(s)	429, 784
BseDI	CCNNGG	3 cut(s)	427, 654, 1026
BseGI	GGATG	3 cut(s)	55, 485, 844
BseLI	CCNNNNNNNGG	1 cut(s)	947
BseMI	GCAATG	2 cut(s)	114, 538
BseMII	CTCAG	6 cut(s)	36, 505, 518, 532, 786, 801
BseNI	ACTGG	1 cut(s)	743
BseRI	GAGGAG	3 cut(s)	62, 65, 926
BseXI	GCAGC	2 cut(s)	533, 704
BseYI	CCCAGC	1 cut(s)	881
BshFI	GGCC	2 cut(s)	537, 887
BsiHKAI	GWGCWC	2 cut(s)	150, 918
BsiSI	CCGG	1 cut(s)	617
BslFI	GGGAC	1 cut(s)	348
BslI	CCNNNNNNNGG	1 cut(s)	947
BsmAI	GTCTC	4 cut(s)	393, 781, 791, 1158
BsmFI	GGGAC	1 cut(s)	348
BsmI	GAATGC	2 cut(s)	474, 924
BsnI	GGCC	2 cut(s)	537, 887
Bsp1286I	GDGCHC	2 cut(s)	150, 918
Bsp13I	TCCGGA	1 cut(s)	616
Bsp1407I	TGTACA	1 cut(s)	1297
Bsp143I	GATC	9 cut(s)	100, 160, 184, 261, 346, 457, 643, 736, 1333
BspACI	CCGC	3 cut(s)	525, 953, 976
BspANI	GGCC	2 cut(s)	537, 887
BspCNI	CTCAG	6 cut(s)	37, 504, 517, 531, 787, 802
BspEI	TCCGGA	1 cut(s)	616
BspLI	GGNNCC	2 cut(s)	621, 886
BspPI	GGATC	5 cut(s)	168, 179, 256, 354, 1328
BsrDI	GCAATG	2 cut(s)	114, 538
BsrGI	TGTACA	1 cut(s)	1297
BsrI	ACTGG	1 cut(s)	743
BssECI	CCNNGG	3 cut(s)	427, 654, 1026
BssMI	GATC	9 cut(s)	100, 160, 184, 261, 346, 457, 643, 736, 1333
BssT1I	CCWWGG	2 cut(s)	654, 1026
Bst2UI	CCWGG	2 cut(s)	429, 784
Bst4CI	ACNGT	5 cut(s)	331, 362, 802, 947, 1201
Bst6I	CTCTTC	1 cut(s)	772
BstAUI	TGTACA	1 cut(s)	1297
BstC8I	GCNNGC	3 cut(s)	285, 529, 539
BstDEI	CTNAG	6 cut(s)	45, 491, 504, 518, 795, 810
BstF5I	GGATG	3 cut(s)	55, 485, 844
BstKTI	GATC	9 cut(s)	103, 163, 187, 264, 349, 460, 646, 739, 1336
BstMAI	GTCTC	4 cut(s)	393, 781, 791, 1158
BstMBI	GATC	9 cut(s)	100, 160, 184, 261, 346, 457, 643, 736, 1333
BstMWI	GCNNNNNNNGC	7 cut(s)	35, 543, 555, 619, 893, 982, 1259
BstNI	CCWGG	2 cut(s)	429, 784
BstNSI	RCATGY	1 cut(s)	287
BstSCI	CCNGG	2 cut(s)	427, 782
BstSFI	CTRYAG	1 cut(s)	207
BstV1I	GCAGC	2 cut(s)	533, 704
BstV2I	GAAGAC	1 cut(s)	129
BstX2I	RGATCY	4 cut(s)	100, 184, 261, 1333
BstYI	RGATCY	4 cut(s)	100, 184, 261, 1333
BsuRI	GGCC	2 cut(s)	537, 887
BtsCI	GGATG	3 cut(s)	55, 485, 844
BtsIMutI	CAGTG	1 cut(s)	952
Cac8I	GCNNGC	3 cut(s)	285, 529, 539
Cfr13I	GGNCC	4 cut(s)	638, 780, 885, 950
Csp6I	GTAC	2 cut(s)	352, 1298
CviAII	CATG	5 cut(s)	256, 284, 635, 1051, 1295
CviQI	GTAC	2 cut(s)	352, 1298
DdeI	CTNAG	6 cut(s)	45, 491, 504, 518, 795, 810
DpnI	GATC	9 cut(s)	102, 162, 186, 263, 348, 459, 645, 738, 1335
DpnII	GATC	9 cut(s)	100, 160, 184, 261, 346, 457, 643, 736, 1333
Eam1104I	CTCTTC	1 cut(s)	772
EarI	CTCTTC	1 cut(s)	772
Ecl136II	GAGCTC	1 cut(s)	148
Eco130I	CCWWGG	2 cut(s)	654, 1026
Eco24I	GRGCYC	1 cut(s)	150
Eco47I	GGWCC	3 cut(s)	638, 780, 950
Eco53kI	GAGCTC	1 cut(s)	148
Eco57I	CTGAAG	3 cut(s)	114, 872, 1350
EcoICRI	GAGCTC	1 cut(s)	148
EcoO109I	RGGNCCY	1 cut(s)	780
EcoRII	CCWGG	2 cut(s)	427, 782
EcoT14I	CCWWGG	2 cut(s)	654, 1026
EcoT38I	GRGCYC	1 cut(s)	150
ErhI	CCWWGG	2 cut(s)	654, 1026
FaeI	CATG	5 cut(s)	259, 287, 638, 1054, 1298
FalI	AAGNNNNNCTT	2 cut(s)	428, 460
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	5 cut(s)	255, 283, 634, 1050, 1294
FauI	CCCGC	1 cut(s)	969
FbaI	TGATCA	2 cut(s)	643, 736
Fnu4HI	GCNGC	2 cut(s)	547, 693
FokI	GGATG	3 cut(s)	42, 472, 851
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	2 cut(s)	547, 693
FspBI	CTAG	4 cut(s)	480, 662, 815, 1194
GluI	GCNGC	2 cut(s)	547, 693
GsaI	CCCAGC	1 cut(s)	885
GsuI	CTGGAG	1 cut(s)	805
HaeIII	GGCC	2 cut(s)	537, 887
HapII	CCGG	1 cut(s)	617
Hin1II	CATG	5 cut(s)	259, 287, 638, 1054, 1298
HincII	GTYRAC	2 cut(s)	334, 422
HindII	GTYRAC	2 cut(s)	334, 422
HinfI	GANTC	7 cut(s)	89, 134, 321, 789, 843, 1054, 1109
HpaI	GTTAAC	1 cut(s)	334
HpaII	CCGG	1 cut(s)	617
HphI	GGTGA	6 cut(s)	368, 443, 992, 1052, 1094, 1253
Hpy166II	GTNNAC	6 cut(s)	82, 334, 422, 950, 1282, 1300
Hpy188I	TCNGA	8 cut(s)	46, 94, 169, 398, 521, 811, 1330, 1359
Hpy188III	TCNNGA	3 cut(s)	461, 617, 850
Hpy8I	GTNNAC	6 cut(s)	82, 334, 422, 950, 1282, 1300
HpyAV	CCTTC	7 cut(s)	403, 450, 454, 684, 847, 901, 1004
HpyCH4III	ACNGT	5 cut(s)	331, 362, 802, 947, 1201
HpyCH4V	TGCA	7 cut(s)	29, 119, 318, 531, 692, 716, 1262
HpyF10VI	GCNNNNNNNGC	7 cut(s)	35, 543, 555, 619, 893, 982, 1259
HpyF3I	CTNAG	6 cut(s)	45, 491, 504, 518, 795, 810
Hsp92II	CATG	5 cut(s)	259, 287, 638, 1054, 1298
Kpn2I	TCCGGA	1 cut(s)	616
Ksp22I	TGATCA	2 cut(s)	643, 736
KspAI	GTTAAC	1 cut(s)	334
Kzo9I	GATC	9 cut(s)	100, 160, 184, 261, 346, 457, 643, 736, 1333
LmnI	GCTCC	5 cut(s)	52, 208, 280, 619, 913
Lsp1109I	GCAGC	2 cut(s)	533, 704
LweI	GCATC	5 cut(s)	64, 454, 808, 963, 1132
MaeI	CTAG	4 cut(s)	480, 662, 815, 1194
MaeIII	GTNAC	4 cut(s)	511, 584, 930, 1019
MalI	GATC	9 cut(s)	102, 162, 186, 263, 348, 459, 645, 738, 1335
MboI	GATC	9 cut(s)	100, 160, 184, 261, 346, 457, 643, 736, 1333
MboII	GAAGA	7 cut(s)	107, 110, 129, 759, 838, 1262, 1343
MflI	RGATCY	4 cut(s)	100, 184, 261, 1333
MhlI	GDGCHC	2 cut(s)	150, 918
MluCI	AATT	4 cut(s)	227, 1068, 1152, 1231
MlyI	GAGTC	3 cut(s)	143, 783, 1118
MroI	TCCGGA	1 cut(s)	616
MseI	TTAA	5 cut(s)	246, 333, 357, 731, 1211
MspI	CCGG	1 cut(s)	617
MspR9I	CCNGG	2 cut(s)	429, 784
Mva1269I	GAATGC	2 cut(s)	474, 924
MvaI	CCWGG	2 cut(s)	429, 784
MwoI	GCNNNNNNNGC	7 cut(s)	35, 543, 555, 619, 893, 982, 1259
NdeII	GATC	9 cut(s)	100, 160, 184, 261, 346, 457, 643, 736, 1333
NlaIII	CATG	5 cut(s)	259, 287, 638, 1054, 1298
NlaIV	GGNNCC	2 cut(s)	621, 886
NmuCI	GTSAC	1 cut(s)	930
NspI	RCATGY	1 cut(s)	287
PaeI	GCATGC	1 cut(s)	287
PctI	GAATGC	2 cut(s)	474, 924
PfeI	GAWTC	4 cut(s)	89, 321, 843, 1054
PfoI	TCCNGGA	1 cut(s)	782
PkrI	GCNGC	2 cut(s)	548, 694
PleI	GAGTC	3 cut(s)	142, 783, 1117
PpsI	GAGTC	3 cut(s)	142, 783, 1117
PpuMI	RGGWCCY	1 cut(s)	780
PsiI	TTATAA	1 cut(s)	1182
Psp124BI	GAGCTC	1 cut(s)	150
Psp5II	RGGWCCY	1 cut(s)	780
Psp6I	CCWGG	2 cut(s)	427, 782
PspFI	CCCAGC	1 cut(s)	881
PspGI	CCWGG	2 cut(s)	427, 782
PspN4I	GGNNCC	2 cut(s)	621, 886
PspPI	GGNCC	4 cut(s)	638, 780, 885, 950
PspPPI	RGGWCCY	1 cut(s)	780
PsuI	RGATCY	4 cut(s)	100, 184, 261, 1333
RsaI	GTAC	2 cut(s)	353, 1299
RsaNI	GTAC	2 cut(s)	352, 1298
SacI	GAGCTC	1 cut(s)	150
SaqAI	TTAA	5 cut(s)	246, 333, 357, 731, 1211
SatI	GCNGC	2 cut(s)	547, 693
Sau3AI	GATC	9 cut(s)	100, 160, 184, 261, 346, 457, 643, 736, 1333
Sau96I	GGNCC	4 cut(s)	638, 780, 885, 950
SchI	GAGTC	3 cut(s)	143, 783, 1118
ScrFI	CCNGG	2 cut(s)	429, 784
SduI	GDGCHC	2 cut(s)	150, 918
SfaNI	GCATC	5 cut(s)	64, 454, 808, 963, 1132
SfcI	CTRYAG	1 cut(s)	207
SinI	GGWCC	3 cut(s)	638, 780, 950
SmlI	CTYRAG	1 cut(s)	1058
SmoI	CTYRAG	1 cut(s)	1058
SphI	GCATGC	1 cut(s)	287
Sse9I	AATT	4 cut(s)	227, 1068, 1152, 1231
SsiI	CCGC	3 cut(s)	525, 953, 976
SspMI	CTAG	4 cut(s)	480, 662, 815, 1194
SstI	GAGCTC	1 cut(s)	150
StyD4I	CCNGG	2 cut(s)	427, 782
StyI	CCWWGG	2 cut(s)	654, 1026
TaaI	ACNGT	5 cut(s)	331, 362, 802, 947, 1201
TaqI	TCGA	2 cut(s)	456, 1112
TasI	AATT	4 cut(s)	227, 1068, 1152, 1231
TatI	WGTACW	1 cut(s)	1297
TfiI	GAWTC	4 cut(s)	89, 321, 843, 1054
Tru1I	TTAA	5 cut(s)	246, 333, 357, 731, 1211
Tru9I	TTAA	5 cut(s)	246, 333, 357, 731, 1211
TscAI	CASTG	1 cut(s)	952
TseFI	GTSAC	1 cut(s)	930
TseI	GCWGC	2 cut(s)	546, 692
Tsp45I	GTSAC	1 cut(s)	930
TspDTI	ATGAA	6 cut(s)	17, 240, 436, 1067, 1202, 1283
TspRI	CASTG	1 cut(s)	952
VpaK11BI	GGWCC	3 cut(s)	638, 780, 950
XapI	RAATTY	1 cut(s)	227
XceI	RCATGY	1 cut(s)	287
XspI	CTAG	4 cut(s)	480, 662, 815, 1194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.