Rh2CG155800

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0003684
Physical Location & Seq
Reverse (-)
13545848 .. 13550023
4176 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG155800.1

Sequence Viewer

Length: 1527 bp
ATGGCCGATGGGGATTCGGATTCTGACAGTAGCTATGTCCTTCTGAGTGATGGCAATTCTGTGGGTAGTGATTCTGAGAACTACTATGTCATTGTAGGTAAAGATGACTATATGAGTGCTGATTCCGGTGAAGATCTGACTGGTGGAAGCCAAAATGAGTTGGAGAAGGTTGTGGTTGATGAAAATCATGTGAGTTCTGACTCTGAAAATGATCAATTTTGTGATAGCCAACAACAGTTGGAGAAGAATGGAGATGATGACAGTAATGCAAGTACTGATTCTAATGAAGATCTGTCTGTTGAGAGAAGAAACCAGTTGAAGAAGCTTGTGGATTATTCCAGTTCTGATTCTGATAAAGATCTATTGGATTGTGGTGGATCACTGTGGAATGAAAGACGTGTGGCTACCAATGAGTTTCACAGATATCCATGTAAAAGAATTGGTCATGTTTGTGGAGAAGATTGCTATGAATTGTCTGGAGAGAAAAAGGCCGAGGACAATATTGACGTCAATAATGTTACAATGGAGTATGTTCTTCCATTCCTCCCTGCCAAAACACTTTGCAGGTTCAGAAGCGTTGGCAAACAGTGGGATGAGTGGATTACCTCTCCTTTTTTCATTCACAAGCAGGCTTACTCCTTCCGGAACATCTCTGGTCTTTTCTGTCAACTTCCTGGGGAAAAGCCTTCTTTTGTCTCGCTCAATAGAGCTGCTTATGGAATTCCCAATCCTTCCCTTAATTTCTTGCCTGAACCAGTTACTGTAAGGACTGCTTGTAATGGCCTGCTCTGCTGCGAAAGCTGCGATGGAGAAAATACTTACTACATTTGCAATCCTGCGAACAAGGAATGGACAGTGCTTCCCAAGGCAAAGCCTTATCATGGACATGAATCAGTTCTAGCACTAGCTTTTGAGCCTTCTGTGCTTGACTTTGAAGAACATTTTCAACTTGTGTGTGCCTTCTCTGTACCTGATGAGCTAGTGATCTGTTTTGATATATACTCTTCAAGTTCGAGGTCTTGGAAACTCTCTCAGACAGAATGCTGTGAGATTAATGCTCTGCATTTGAAAGGTCATGGGATCTTTTTGAAGGGAATGGTATTCTGGGAAACTCATACTGGCGCAATTTTGGCTTTTAATCTGAAGGAGGAGCAATATGGTATTTTGCCTCTCCCTCCTCACAGCGGACCACTAGGTGTTATGGCAGAGATGTACGGCGAGCTGTGTTATATTCTGCCTGTTCTGGAAGACTATGTATACACCTTGGAGATCTATGGTGATATGGACATGAAACTGAAGCGCAGAATTCCTCTTGCTGATGGTATTTTCACCGATGCTTATGAAGAGTTGAGGGCTTTGGCTTGTGTAACTGATGATGTGGTGATCATGCTTCTTGGAATGAACTTGATTGCTTATCATGTGAAAGCAGAGAAGGCTGATATCATATGTGAACAGCCTGGGATTTTTTCTGGATATGCAGGTTATCTTCCATATGTGAACAGCCTGGTGCACATAAATCACCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

508

Amino Acids

56.85

Weight (kDa)

4.55

Isoelectric Point (pI)

44.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 255 - 393 6.1e-08 F-box protein At3g26010-like, beta-propeller
FBA_3 PF08268 255 - 393 4e-07 F-box associated beta propeller domain
FBA_1 PF07734 257 - 395 9.7e-11 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 510
Acc36I ACCTGC 2 cut(s) 555, 1469
AccI GTMKAC 1 cut(s) 1257
AccIII TCCGGA 1 cut(s) 642
AciI CCGC 1 cut(s) 1185
AclWI GGATC 2 cut(s) 385, 1088
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 720, 1305
AcuI CTGAAG 2 cut(s) 1163, 1316
AcyI GRCGYC 1 cut(s) 507
AdeI CACNNNGTG 1 cut(s) 1196
AfaI GTAC 3 cut(s) 274, 969, 1214
AfiI CCNNNNNNNGG 2 cut(s) 881, 1184
AflIII ACRYGT 1 cut(s) 397
AgsI TTSAA 6 cut(s) 319, 935, 947, 1008, 1069, 1090
AjiI CACGTC 1 cut(s) 398
AjnI CCWGG 3 cut(s) 673, 1456, 1503
AluBI AGCT 7 cut(s) 33, 325, 710, 801, 908, 979, 1222
AluI AGCT 7 cut(s) 33, 325, 710, 801, 908, 979, 1222
Alw21I GWGCWC 1 cut(s) 1512
Alw26I GTCTC 1 cut(s) 700
Alw44I GTGCAC 1 cut(s) 1508
AlwI GGATC 2 cut(s) 385, 1088
AlwNI CAGNNNCTG 1 cut(s) 761
Aor13HI TCCGGA 1 cut(s) 642
AoxI GGCC 3 cut(s) 3, 489, 781
ApaLI GTGCAC 1 cut(s) 1508
ApeKI GCWGC 3 cut(s) 710, 792, 801
ApoI RAATTY 2 cut(s) 720, 1305
AseI ATTAAT 1 cut(s) 1053
Asp700I GAANNNNTTC 2 cut(s) 894, 942
AspLEI GCGC 2 cut(s) 1124, 1302
AspS9I GGNCC 1 cut(s) 1187
AsuHPI GGTGA 5 cut(s) 140, 1289, 1321, 1393, 1511
AvaII GGWCC 1 cut(s) 1187
BaeGI GKGCMC 1 cut(s) 1512
BbsI GAAGAC 1 cut(s) 1254
Bbv12I GWGCWC 1 cut(s) 1512
BbvI GCAGC 3 cut(s) 697, 779, 788
BccI CCATC 4 cut(s) 2, 44, 800, 1313
BceAI ACGGC 1 cut(s) 1231
BciT130I CCWGG 3 cut(s) 675, 1458, 1505
BclI TGATCA 2 cut(s) 211, 1383
BcoDI GTCTC 1 cut(s) 700
BfaI CTAG 4 cut(s) 899, 905, 980, 1193
BfuAI ACCTGC 2 cut(s) 555, 1469
BglII AGATCT 4 cut(s) 133, 289, 358, 1269
BisI GCNGC 3 cut(s) 711, 793, 802
BlsI GCNGC 3 cut(s) 712, 794, 803
BmcAI AGTACT 1 cut(s) 274
Bme1390I CCNGG 3 cut(s) 675, 1458, 1505
Bme18I GGWCC 1 cut(s) 1187
BmgBI CACGTC 1 cut(s) 398
BmgT120I GGNCC 1 cut(s) 1187
BmrFI CCNGG 3 cut(s) 675, 1458, 1505
BmsI GCATC 1 cut(s) 1324
BpiI GAAGAC 1 cut(s) 1254
BpmI CTGGAG 1 cut(s) 498
BsaBI GATNNNNATC 2 cut(s) 183, 357
BsaHI GRCGYC 1 cut(s) 507
BsaJI CCNNGG 5 cut(s) 492, 674, 864, 1263, 1457
BsaWI WCCGGW 2 cut(s) 125, 642
Bsc4I CCNNNNNNNGG 2 cut(s) 881, 1184
Bse1I ACTGG 5 cut(s) 145, 313, 339, 755, 1123
Bse8I GATNNNNATC 2 cut(s) 183, 357
BseAI TCCGGA 1 cut(s) 642
BseBI CCWGG 3 cut(s) 675, 1458, 1505
BseDI CCNNGG 5 cut(s) 492, 674, 864, 1263, 1457
BseGI GGATG 1 cut(s) 598
BseJI GATNNNNATC 2 cut(s) 183, 357
BseLI CCNNNNNNNGG 2 cut(s) 881, 1184
BseMII CTCAG 3 cut(s) 35, 66, 1046
BseNI ACTGG 5 cut(s) 145, 313, 339, 755, 1123
BseRI GAGGAG 2 cut(s) 1163, 1167
BseSI GKGCMC 1 cut(s) 1512
BseXI GCAGC 3 cut(s) 697, 779, 788
BshFI GGCC 3 cut(s) 5, 491, 783
BsiHKAI GWGCWC 1 cut(s) 1512
BsiSI CCGG 2 cut(s) 126, 643
BslI CCNNNNNNNGG 2 cut(s) 881, 1184
BsmAI GTCTC 1 cut(s) 700
BsmI GAATGC 1 cut(s) 1046
BsnI GGCC 3 cut(s) 5, 491, 783
Bsp1286I GDGCHC 1 cut(s) 1512
Bsp13I TCCGGA 1 cut(s) 642
Bsp143I GATC 9 cut(s) 133, 211, 289, 358, 377, 984, 1080, 1269, 1383
BspACI CCGC 1 cut(s) 1185
BspANI GGCC 3 cut(s) 5, 491, 783
BspCNI CTCAG 3 cut(s) 36, 67, 1045
BspEI TCCGGA 1 cut(s) 642
BspMI ACCTGC 2 cut(s) 555, 1469
BspPI GGATC 2 cut(s) 385, 1088
BsrI ACTGG 5 cut(s) 145, 313, 339, 755, 1123
BssECI CCNNGG 5 cut(s) 492, 674, 864, 1263, 1457
BssMI GATC 9 cut(s) 133, 211, 289, 358, 377, 984, 1080, 1269, 1383
BssNAI GTATAC 1 cut(s) 1258
BssNI GRCGYC 1 cut(s) 507
BssT1I CCWWGG 2 cut(s) 864, 1263
Bst1107I GTATAC 1 cut(s) 1258
Bst2UI CCWGG 3 cut(s) 675, 1458, 1505
Bst4CI ACNGT 7 cut(s) 29, 237, 263, 384, 588, 763, 856
Bst6I CTCTTC 2 cut(s) 1009, 1338
BstACI GRCGYC 1 cut(s) 507
BstC8I GCNNGC 3 cut(s) 630, 785, 1220
BstDEI CTNAG 3 cut(s) 44, 75, 1032
BstF5I GGATG 1 cut(s) 598
BstHHI GCGC 2 cut(s) 1124, 1302
BstKTI GATC 9 cut(s) 136, 214, 292, 361, 380, 987, 1083, 1272, 1386
BstMAI GTCTC 1 cut(s) 700
BstMBI GATC 9 cut(s) 133, 211, 289, 358, 377, 984, 1080, 1269, 1383
BstMWI GCNNNNNNNGC 6 cut(s) 789, 798, 801, 922, 1130, 1433
BstNI CCWGG 3 cut(s) 675, 1458, 1505
BstSCI CCNGG 3 cut(s) 673, 1456, 1503
BstSLI GKGCMC 1 cut(s) 1512
BstV1I GCAGC 3 cut(s) 697, 779, 788
BstV2I GAAGAC 1 cut(s) 1254
BstX2I RGATCY 5 cut(s) 133, 289, 358, 1080, 1269
BstYI RGATCY 5 cut(s) 133, 289, 358, 1080, 1269
BstZ17I GTATAC 1 cut(s) 1258
BsuRI GGCC 3 cut(s) 5, 491, 783
BtgZI GCGATG 1 cut(s) 819
BtrI CACGTC 1 cut(s) 398
BtsCI GGATG 1 cut(s) 598
BtsIMutI CAGTG 3 cut(s) 380, 593, 861
BveI ACCTGC 2 cut(s) 555, 1469
Cac8I GCNNGC 3 cut(s) 630, 785, 1220
CaiI CAGNNNCTG 1 cut(s) 761
CfoI GCGC 2 cut(s) 1124, 1302
Cfr13I GGNCC 1 cut(s) 1187
Csp6I GTAC 3 cut(s) 273, 968, 1213
CviQI GTAC 3 cut(s) 273, 968, 1213
DdeI CTNAG 3 cut(s) 44, 75, 1032
DpnI GATC 9 cut(s) 135, 213, 291, 360, 379, 986, 1082, 1271, 1385
DpnII GATC 9 cut(s) 133, 211, 289, 358, 377, 984, 1080, 1269, 1383
DraIII CACNNNGTG 1 cut(s) 1196
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 1009, 1338
EarI CTCTTC 2 cut(s) 1009, 1338
Eco130I CCWWGG 2 cut(s) 864, 1263
Eco32I GATATC 2 cut(s) 425, 1441
Eco47I GGWCC 1 cut(s) 1187
Eco57I CTGAAG 2 cut(s) 1163, 1316
EcoRI GAATTC 2 cut(s) 720, 1305
EcoRII CCWGG 3 cut(s) 673, 1456, 1503
EcoRV GATATC 2 cut(s) 425, 1441
EcoT14I CCWWGG 2 cut(s) 864, 1263
ErhI CCWWGG 2 cut(s) 864, 1263
FalI AAGNNNNNCTT 2 cut(s) 757, 789
FauNDI CATATG 2 cut(s) 1445, 1492
FbaI TGATCA 2 cut(s) 211, 1383
FblI GTMKAC 1 cut(s) 1257
Fnu4HI GCNGC 3 cut(s) 711, 793, 802
FokI GGATG 1 cut(s) 605
Fsp4HI GCNGC 3 cut(s) 711, 793, 802
FspBI CTAG 4 cut(s) 899, 905, 980, 1193
GlaI GCGC 2 cut(s) 1123, 1301
GluI GCNGC 3 cut(s) 711, 793, 802
GsuI CTGGAG 1 cut(s) 498
HaeIII GGCC 3 cut(s) 5, 491, 783
HapII CCGG 2 cut(s) 126, 643
HhaI GCGC 2 cut(s) 1124, 1302
Hin1I GRCGYC 1 cut(s) 507
Hin6I GCGC 2 cut(s) 1122, 1300
HinP1I GCGC 2 cut(s) 1122, 1300
HincII GTYRAC 1 cut(s) 668
HindII GTYRAC 1 cut(s) 668
HindIII AAGCTT 1 cut(s) 323
HinfI GANTC 8 cut(s) 14, 20, 71, 122, 200, 278, 347, 890
HpaII CCGG 2 cut(s) 126, 643
HphI GGTGA 5 cut(s) 140, 1289, 1321, 1393, 1511
Hpy166II GTNNAC 5 cut(s) 668, 1258, 1451, 1498, 1510
Hpy188III TCNNGA 4 cut(s) 477, 643, 1244, 1470
Hpy8I GTNNAC 5 cut(s) 668, 1258, 1451, 1498, 1510
HpyCH4III ACNGT 7 cut(s) 29, 237, 263, 384, 588, 763, 856
HpyCH4IV ACGT 2 cut(s) 397, 507
HpyCH4V TGCA 6 cut(s) 269, 564, 831, 1063, 1478, 1510
HpyF10VI GCNNNNNNNGC 6 cut(s) 789, 798, 801, 922, 1130, 1433
HpyF3I CTNAG 3 cut(s) 44, 75, 1032
HpySE526I ACGT 2 cut(s) 397, 507
Hsp92I GRCGYC 1 cut(s) 507
HspAI GCGC 2 cut(s) 1122, 1300
Kpn2I TCCGGA 1 cut(s) 642
Ksp22I TGATCA 2 cut(s) 211, 1383
Kzo9I GATC 9 cut(s) 133, 211, 289, 358, 377, 984, 1080, 1269, 1383
LmnI GCTCC 1 cut(s) 1150
Lsp1109I GCAGC 3 cut(s) 697, 779, 788
LweI GCATC 1 cut(s) 1324
MaeI CTAG 4 cut(s) 899, 905, 980, 1193
MaeII ACGT 2 cut(s) 397, 507
MaeIII GTNAC 3 cut(s) 517, 757, 1366
MalI GATC 9 cut(s) 135, 213, 291, 360, 379, 986, 1082, 1271, 1385
MboI GATC 9 cut(s) 133, 211, 289, 358, 377, 984, 1080, 1269, 1383
MflI RGATCY 5 cut(s) 133, 289, 358, 1080, 1269
MhlI GDGCHC 1 cut(s) 1512
MluCI AATT 8 cut(s) 55, 215, 438, 470, 720, 739, 1125, 1305
MlyI GAGTC 1 cut(s) 194
MmeI TCCRAC 2 cut(s) 141, 219
MroI TCCGGA 1 cut(s) 642
MroXI GAANNNNTTC 2 cut(s) 894, 942
MseI TTAA 3 cut(s) 738, 1053, 1137
MslI CAYNNNNRTG 2 cut(s) 450, 885
MspA1I CMGCKG 1 cut(s) 1185
MspI CCGG 2 cut(s) 126, 643
MspR9I CCNGG 3 cut(s) 675, 1458, 1505
Mva1269I GAATGC 1 cut(s) 1046
MvaI CCWGG 3 cut(s) 675, 1458, 1505
MwoI GCNNNNNNNGC 6 cut(s) 789, 798, 801, 922, 1130, 1433
NdeI CATATG 2 cut(s) 1445, 1492
NdeII GATC 9 cut(s) 133, 211, 289, 358, 377, 984, 1080, 1269, 1383
NmeAIII GCCGAG 1 cut(s) 517
PctI GAATGC 1 cut(s) 1046
PdmI GAANNNNTTC 2 cut(s) 894, 942
PfeI GAWTC 7 cut(s) 14, 20, 71, 122, 278, 347, 890
PkrI GCNGC 3 cut(s) 712, 794, 803
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
PshBI ATTAAT 1 cut(s) 1053
Psp6I CCWGG 3 cut(s) 673, 1456, 1503
PspGI CCWGG 3 cut(s) 673, 1456, 1503
PspPI GGNCC 1 cut(s) 1187
PstNI CAGNNNCTG 1 cut(s) 761
PsuI RGATCY 5 cut(s) 133, 289, 358, 1080, 1269
RsaI GTAC 3 cut(s) 274, 969, 1214
RsaNI GTAC 3 cut(s) 273, 968, 1213
RseI CAYNNNNRTG 2 cut(s) 450, 885
SaqAI TTAA 3 cut(s) 738, 1053, 1137
SatI GCNGC 3 cut(s) 711, 793, 802
Sau3AI GATC 9 cut(s) 133, 211, 289, 358, 377, 984, 1080, 1269, 1383
Sau96I GGNCC 1 cut(s) 1187
ScaI AGTACT 1 cut(s) 274
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 3 cut(s) 675, 1458, 1505
SduI GDGCHC 1 cut(s) 1512
SfaNI GCATC 1 cut(s) 1324
SinI GGWCC 1 cut(s) 1187
SmiMI CAYNNNNRTG 2 cut(s) 450, 885
Sse9I AATT 8 cut(s) 55, 215, 438, 470, 720, 739, 1125, 1305
SsiI CCGC 1 cut(s) 1185
SspI AATATT 1 cut(s) 502
SspMI CTAG 4 cut(s) 899, 905, 980, 1193
StyD4I CCNGG 3 cut(s) 673, 1456, 1503
StyI CCWWGG 2 cut(s) 864, 1263
TaaI ACNGT 7 cut(s) 29, 237, 263, 384, 588, 763, 856
TaiI ACGT 2 cut(s) 400, 510
TaqI TCGA 1 cut(s) 1013
TasI AATT 8 cut(s) 55, 215, 438, 470, 720, 739, 1125, 1305
TatI WGTACW 1 cut(s) 272
TfiI GAWTC 7 cut(s) 14, 20, 71, 122, 278, 347, 890
Tru1I TTAA 3 cut(s) 738, 1053, 1137
Tru9I TTAA 3 cut(s) 738, 1053, 1137
TscAI CASTG 3 cut(s) 387, 593, 861
TseI GCWGC 3 cut(s) 710, 792, 801
TspDTI ATGAA 9 cut(s) 195, 300, 405, 483, 607, 903, 1304, 1356, 1415
TspRI CASTG 3 cut(s) 387, 593, 861
VneI GTGCAC 1 cut(s) 1508
VpaK11BI GGWCC 1 cut(s) 1187
VspI ATTAAT 1 cut(s) 1053
XapI RAATTY 2 cut(s) 720, 1305
XmiI GTMKAC 1 cut(s) 1257
XmnI GAANNNNTTC 2 cut(s) 894, 942
XspI CTAG 4 cut(s) 899, 905, 980, 1193
ZraI GACGTC 1 cut(s) 508
ZrmI AGTACT 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.