Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000838.1

Orthogroup ID

OG0003684

Physical Location & Seq

Genomic Coordinates Reverse (-)

45811 .. 47651

Gene Structure 1841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000838.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1527 bp

atggccaatggggattcggattctgacagtagctatgtccttctgagtgatggcaattctgtgggtagtgattctgagaactactatgtcattgtgggtaaagacgactatatgagtgctgattccggtgaagatctgactggtggaagccaaaatgagttggagaaggttgtggttgatgaaaatcatgtgagttctgactctgaaaattatcaattctgtgatagccaacaacagttggagcagaatggagatgatgacagtaatgcgagtactgattctgatgaagatctgtctgttgagagaagaaaccagttgaagaagcttgtggattattccagttctgattctgataaagatctattggattgtggtggatcactgtggaatgaaagacgtgtggctaccaatgagtttcacagatatccatgtaaaagaattggtcatgtttgtggagaagattgctatgaattgtctggagagaaaaaggccgaggacaatattgacatcaataatgttacaatggagtatgttcttccattcctccctgccaaaacactttgcaggttcagaagcgttggcaaacagtgggatgagtggattacctctcctttttttattcacaagcaggcttactccttccggaacatctctggtcttttctgtcaacttcctggggaaaatccttcttttgtctccctcaatagagctgcttatggaattcccaatccttcccttaatttcttgcctgaaccagttactgtaaggactgcttgtaatggcctgctctgctgcgaaagctgcgatggagaaaatacttactacatttgcaatcctgcgaacaaggaatggacagtgcttcccaaggcaaagccttatcatggacatgaatcagttctagcactagcttttgagccttctgtgcttgactttgaagaacattttcaacttgtgtgtgccttctctgtacctgatgagccagtgatctgttttgatatatactcttcaagttcgaggtcttggaaactctctcagacagaatgctgtgagattaatgctctgcatttgaaaggtcatgggatctttttgaagggaatggtattctgggaaactcttactggcgcaattttggcttttaatctgaaggaggagcaatatggtattttgcctctccctcctcacagcggaccactaggtgttatggcagagatgtacggcgagctgtgttatattctacctgttctggaagactatgtatacaccttggagatctatggtgatatggacatgaaactgaagcgcagaattcctcttgctgatggtattttcaccaatgcttatgaagagttgagggctttggcttgtgtaactgatgatttggtgatcatgcttcttggaatgaacttgattgcttatcatgtgaaagcagagaaggctgatatcatacatagttatactgagattattgctggatatgcaggttatcttccatatgtgaacagcctggtgcacataaatcacccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

508

Amino Acids

56.93

Weight (kDa)

4.54

Isoelectric Point (pI)

46.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003684)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13470 FvH4_1g13470 FvH4_1g13480 FvH4_1g13480 FvH4_1g13480
malus_domestica	MD02G1150100.v1.1 MD02G1150200.v1.1
prunus_persica	Prupe.7G152900_v2.0.a1 Prupe.7G153000_v2.0.a1 Prupe.7G153000_v2.0.a1
pyrus_communis	pycom02g11790 pycom02g11800 pycom15g23040
rosa_chinensis	RchiOBHm_Chr2g0101851 RchiOBHm_Chr2g0101871
rosa_laevigata	RLG00000017105 RLG00000017106
rosa_multiflora	Rmu_sc0000838.1_g000007 Rmu_sc0000838.1_g000009
rosa_roxburghii	Rroxscaffold_2G00140980 Rroxscaffold_2G00140990
rosa_rugosa	Rorug02G0102400 Rorug02G0102600 Rorug02G0102700 Rorug02G0102800
rosa_samantha	Rh2AG149900 Rh2AG150000 Rh2BG155400 Rh2BG155600 Rh2CG155800 Rh2CG155900 Rh2DG155600 Rh2DG155700
rosa_wichuraiana	Rw2G011730 Rw2G011740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	555, 1469
AccI	GTMKAC	1 cut(s)	1257
AccIII	TCCGGA	1 cut(s)	642
AciI	CCGC	1 cut(s)	1185
AclWI	GGATC	2 cut(s)	385, 1088
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	720, 1305
AcuI	CTGAAG	2 cut(s)	1163, 1316
AdeI	CACNNNGTG	1 cut(s)	1196
AfaI	GTAC	3 cut(s)	274, 969, 1214
AfiI	CCNNNNNNNGG	2 cut(s)	881, 1184
AflIII	ACRYGT	1 cut(s)	397
AgsI	TTSAA	6 cut(s)	319, 935, 947, 1008, 1069, 1090
AjiI	CACGTC	1 cut(s)	398
AjnI	CCWGG	2 cut(s)	673, 1503
AluBI	AGCT	6 cut(s)	33, 325, 710, 801, 908, 1222
AluI	AGCT	6 cut(s)	33, 325, 710, 801, 908, 1222
Alw21I	GWGCWC	1 cut(s)	1512
Alw26I	GTCTC	1 cut(s)	700
Alw44I	GTGCAC	1 cut(s)	1508
AlwI	GGATC	2 cut(s)	385, 1088
AlwNI	CAGNNNCTG	1 cut(s)	761
Aor13HI	TCCGGA	1 cut(s)	642
AoxI	GGCC	3 cut(s)	3, 489, 781
ApaLI	GTGCAC	1 cut(s)	1508
ApeKI	GCWGC	3 cut(s)	710, 792, 801
ApoI	RAATTY	2 cut(s)	720, 1305
AseI	ATTAAT	1 cut(s)	1053
Asp700I	GAANNNNTTC	2 cut(s)	894, 942
AspLEI	GCGC	2 cut(s)	1124, 1302
AspS9I	GGNCC	1 cut(s)	1187
AsuHPI	GGTGA	5 cut(s)	140, 1289, 1321, 1393, 1511
AvaII	GGWCC	1 cut(s)	1187
BaeGI	GKGCMC	1 cut(s)	1512
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	1254
Bbv12I	GWGCWC	1 cut(s)	1512
BbvI	GCAGC	3 cut(s)	697, 779, 788
BccI	CCATC	3 cut(s)	44, 800, 1313
BceAI	ACGGC	1 cut(s)	1231
BciT130I	CCWGG	2 cut(s)	675, 1505
BclI	TGATCA	1 cut(s)	1383
BcoDI	GTCTC	1 cut(s)	700
BfaI	CTAG	3 cut(s)	899, 905, 1193
BfuAI	ACCTGC	2 cut(s)	555, 1469
BglII	AGATCT	4 cut(s)	133, 289, 358, 1269
BisI	GCNGC	3 cut(s)	711, 793, 802
BlsI	GCNGC	3 cut(s)	712, 794, 803
BmcAI	AGTACT	1 cut(s)	274
Bme1390I	CCNGG	2 cut(s)	675, 1505
Bme18I	GGWCC	1 cut(s)	1187
BmgBI	CACGTC	1 cut(s)	398
BmgT120I	GGNCC	1 cut(s)	1187
BmrFI	CCNGG	2 cut(s)	675, 1505
BpiI	GAAGAC	1 cut(s)	1254
BpmI	CTGGAG	1 cut(s)	498
BsaBI	GATNNNNATC	3 cut(s)	183, 288, 357
BsaJI	CCNNGG	4 cut(s)	492, 674, 864, 1263
BsaWI	WCCGGW	2 cut(s)	125, 642
Bsc4I	CCNNNNNNNGG	2 cut(s)	881, 1184
Bse1I	ACTGG	6 cut(s)	145, 313, 339, 755, 980, 1123
Bse8I	GATNNNNATC	3 cut(s)	183, 288, 357
BseAI	TCCGGA	1 cut(s)	642
BseBI	CCWGG	2 cut(s)	675, 1505
BseDI	CCNNGG	4 cut(s)	492, 674, 864, 1263
BseGI	GGATG	1 cut(s)	598
BseJI	GATNNNNATC	3 cut(s)	183, 288, 357
BseLI	CCNNNNNNNGG	2 cut(s)	881, 1184
BseMII	CTCAG	4 cut(s)	35, 66, 1046, 1449
BseNI	ACTGG	6 cut(s)	145, 313, 339, 755, 980, 1123
BseRI	GAGGAG	2 cut(s)	1163, 1167
BseSI	GKGCMC	1 cut(s)	1512
BseXI	GCAGC	3 cut(s)	697, 779, 788
BshFI	GGCC	3 cut(s)	5, 491, 783
BsiHKAI	GWGCWC	1 cut(s)	1512
BsiSI	CCGG	2 cut(s)	126, 643
BslI	CCNNNNNNNGG	2 cut(s)	881, 1184
BsmAI	GTCTC	1 cut(s)	700
BsmI	GAATGC	1 cut(s)	1046
BsnI	GGCC	3 cut(s)	5, 491, 783
Bsp1286I	GDGCHC	1 cut(s)	1512
Bsp13I	TCCGGA	1 cut(s)	642
Bsp143I	GATC	8 cut(s)	133, 289, 358, 377, 984, 1080, 1269, 1383
BspACI	CCGC	1 cut(s)	1185
BspANI	GGCC	3 cut(s)	5, 491, 783
BspCNI	CTCAG	4 cut(s)	36, 67, 1045, 1450
BspEI	TCCGGA	1 cut(s)	642
BspMI	ACCTGC	2 cut(s)	555, 1469
BspPI	GGATC	2 cut(s)	385, 1088
BsrI	ACTGG	6 cut(s)	145, 313, 339, 755, 980, 1123
BssECI	CCNNGG	4 cut(s)	492, 674, 864, 1263
BssMI	GATC	8 cut(s)	133, 289, 358, 377, 984, 1080, 1269, 1383
BssNAI	GTATAC	1 cut(s)	1258
BssT1I	CCWWGG	2 cut(s)	864, 1263
Bst1107I	GTATAC	1 cut(s)	1258
Bst2UI	CCWGG	2 cut(s)	675, 1505
Bst4CI	ACNGT	7 cut(s)	29, 237, 263, 384, 588, 763, 856
Bst6I	CTCTTC	2 cut(s)	1009, 1338
BstC8I	GCNNGC	3 cut(s)	630, 785, 1220
BstDEI	CTNAG	4 cut(s)	44, 75, 1032, 1458
BstF5I	GGATG	1 cut(s)	598
BstHHI	GCGC	2 cut(s)	1124, 1302
BstKTI	GATC	8 cut(s)	136, 292, 361, 380, 987, 1083, 1272, 1386
BstMAI	GTCTC	1 cut(s)	700
BstMBI	GATC	8 cut(s)	133, 289, 358, 377, 984, 1080, 1269, 1383
BstMWI	GCNNNNNNNGC	7 cut(s)	789, 798, 801, 922, 1130, 1433, 1475
BstNI	CCWGG	2 cut(s)	675, 1505
BstSCI	CCNGG	2 cut(s)	673, 1503
BstSLI	GKGCMC	1 cut(s)	1512
BstV1I	GCAGC	3 cut(s)	697, 779, 788
BstV2I	GAAGAC	1 cut(s)	1254
BstX2I	RGATCY	5 cut(s)	133, 289, 358, 1080, 1269
BstYI	RGATCY	5 cut(s)	133, 289, 358, 1080, 1269
BstZ17I	GTATAC	1 cut(s)	1258
BsuRI	GGCC	3 cut(s)	5, 491, 783
BtgZI	GCGATG	1 cut(s)	819
BtrI	CACGTC	1 cut(s)	398
BtsCI	GGATG	1 cut(s)	598
BtsIMutI	CAGTG	4 cut(s)	380, 593, 861, 987
BveI	ACCTGC	2 cut(s)	555, 1469
Cac8I	GCNNGC	3 cut(s)	630, 785, 1220
CaiI	CAGNNNCTG	1 cut(s)	761
CfoI	GCGC	2 cut(s)	1124, 1302
Cfr13I	GGNCC	1 cut(s)	1187
Csp6I	GTAC	3 cut(s)	273, 968, 1213
CviQI	GTAC	3 cut(s)	273, 968, 1213
DdeI	CTNAG	4 cut(s)	44, 75, 1032, 1458
DpnI	GATC	8 cut(s)	135, 291, 360, 379, 986, 1082, 1271, 1385
DpnII	GATC	8 cut(s)	133, 289, 358, 377, 984, 1080, 1269, 1383
DraIII	CACNNNGTG	1 cut(s)	1196
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	1009, 1338
EarI	CTCTTC	2 cut(s)	1009, 1338
Eco130I	CCWWGG	2 cut(s)	864, 1263
Eco32I	GATATC	2 cut(s)	425, 1441
Eco47I	GGWCC	1 cut(s)	1187
Eco57I	CTGAAG	2 cut(s)	1163, 1316
EcoRI	GAATTC	2 cut(s)	720, 1305
EcoRII	CCWGG	2 cut(s)	673, 1503
EcoRV	GATATC	2 cut(s)	425, 1441
EcoT14I	CCWWGG	2 cut(s)	864, 1263
ErhI	CCWWGG	2 cut(s)	864, 1263
FalI	AAGNNNNNCTT	2 cut(s)	757, 789
FauNDI	CATATG	1 cut(s)	1492
FbaI	TGATCA	1 cut(s)	1383
FblI	GTMKAC	1 cut(s)	1257
Fnu4HI	GCNGC	3 cut(s)	711, 793, 802
FokI	GGATG	1 cut(s)	605
Fsp4HI	GCNGC	3 cut(s)	711, 793, 802
FspBI	CTAG	3 cut(s)	899, 905, 1193
GlaI	GCGC	2 cut(s)	1123, 1301
GluI	GCNGC	3 cut(s)	711, 793, 802
GsuI	CTGGAG	1 cut(s)	498
HaeIII	GGCC	3 cut(s)	5, 491, 783
HapII	CCGG	2 cut(s)	126, 643
HhaI	GCGC	2 cut(s)	1124, 1302
Hin6I	GCGC	2 cut(s)	1122, 1300
HinP1I	GCGC	2 cut(s)	1122, 1300
HincII	GTYRAC	1 cut(s)	668
HindII	GTYRAC	1 cut(s)	668
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	8 cut(s)	14, 20, 71, 122, 200, 278, 347, 890
HpaII	CCGG	2 cut(s)	126, 643
HphI	GGTGA	5 cut(s)	140, 1289, 1321, 1393, 1511
Hpy166II	GTNNAC	4 cut(s)	668, 1258, 1498, 1510
Hpy188III	TCNNGA	3 cut(s)	477, 643, 1244
Hpy8I	GTNNAC	4 cut(s)	668, 1258, 1498, 1510
HpyCH4III	ACNGT	7 cut(s)	29, 237, 263, 384, 588, 763, 856
HpyCH4IV	ACGT	1 cut(s)	397
HpyCH4V	TGCA	5 cut(s)	564, 831, 1063, 1478, 1510
HpyF10VI	GCNNNNNNNGC	7 cut(s)	789, 798, 801, 922, 1130, 1433, 1475
HpyF3I	CTNAG	4 cut(s)	44, 75, 1032, 1458
HpySE526I	ACGT	1 cut(s)	397
HspAI	GCGC	2 cut(s)	1122, 1300
Kpn2I	TCCGGA	1 cut(s)	642
Ksp22I	TGATCA	1 cut(s)	1383
Kzo9I	GATC	8 cut(s)	133, 289, 358, 377, 984, 1080, 1269, 1383
LmnI	GCTCC	2 cut(s)	241, 1150
Lsp1109I	GCAGC	3 cut(s)	697, 779, 788
MaeI	CTAG	3 cut(s)	899, 905, 1193
MaeII	ACGT	1 cut(s)	397
MaeIII	GTNAC	3 cut(s)	517, 757, 1366
MalI	GATC	8 cut(s)	135, 291, 360, 379, 986, 1082, 1271, 1385
MboI	GATC	8 cut(s)	133, 289, 358, 377, 984, 1080, 1269, 1383
MflI	RGATCY	5 cut(s)	133, 289, 358, 1080, 1269
MhlI	GDGCHC	1 cut(s)	1512
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	9 cut(s)	55, 208, 215, 438, 470, 720, 739, 1125, 1305
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	2 cut(s)	141, 219
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	642
MroXI	GAANNNNTTC	2 cut(s)	894, 942
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	738, 1053, 1137
MslI	CAYNNNNRTG	2 cut(s)	450, 885
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	1185
MspI	CCGG	2 cut(s)	126, 643
MspR9I	CCNGG	2 cut(s)	675, 1505
Mva1269I	GAATGC	1 cut(s)	1046
MvaI	CCWGG	2 cut(s)	675, 1505
MwoI	GCNNNNNNNGC	7 cut(s)	789, 798, 801, 922, 1130, 1433, 1475
NdeI	CATATG	1 cut(s)	1492
NdeII	GATC	8 cut(s)	133, 289, 358, 377, 984, 1080, 1269, 1383
NmeAIII	GCCGAG	1 cut(s)	517
PctI	GAATGC	1 cut(s)	1046
PdmI	GAANNNNTTC	2 cut(s)	894, 942
PfeI	GAWTC	7 cut(s)	14, 20, 71, 122, 278, 347, 890
PkrI	GCNGC	3 cut(s)	712, 794, 803
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
PshBI	ATTAAT	1 cut(s)	1053
Psp6I	CCWGG	2 cut(s)	673, 1503
PspGI	CCWGG	2 cut(s)	673, 1503
PspPI	GGNCC	1 cut(s)	1187
PstNI	CAGNNNCTG	1 cut(s)	761
PsuI	RGATCY	5 cut(s)	133, 289, 358, 1080, 1269
RsaI	GTAC	3 cut(s)	274, 969, 1214
RsaNI	GTAC	3 cut(s)	273, 968, 1213
RseI	CAYNNNNRTG	2 cut(s)	450, 885
SaqAI	TTAA	3 cut(s)	738, 1053, 1137
SatI	GCNGC	3 cut(s)	711, 793, 802
Sau3AI	GATC	8 cut(s)	133, 289, 358, 377, 984, 1080, 1269, 1383
Sau96I	GGNCC	1 cut(s)	1187
ScaI	AGTACT	1 cut(s)	274
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	2 cut(s)	675, 1505
SduI	GDGCHC	1 cut(s)	1512
SinI	GGWCC	1 cut(s)	1187
SmiMI	CAYNNNNRTG	2 cut(s)	450, 885
Sse9I	AATT	9 cut(s)	55, 208, 215, 438, 470, 720, 739, 1125, 1305
SsiI	CCGC	1 cut(s)	1185
SspI	AATATT	1 cut(s)	502
SspMI	CTAG	3 cut(s)	899, 905, 1193
StyD4I	CCNGG	2 cut(s)	673, 1503
StyI	CCWWGG	2 cut(s)	864, 1263
TaaI	ACNGT	7 cut(s)	29, 237, 263, 384, 588, 763, 856
TaiI	ACGT	1 cut(s)	400
TaqI	TCGA	1 cut(s)	1013
TasI	AATT	9 cut(s)	55, 208, 215, 438, 470, 720, 739, 1125, 1305
TatI	WGTACW	1 cut(s)	272
TfiI	GAWTC	7 cut(s)	14, 20, 71, 122, 278, 347, 890
Tru1I	TTAA	3 cut(s)	738, 1053, 1137
Tru9I	TTAA	3 cut(s)	738, 1053, 1137
TscAI	CASTG	4 cut(s)	387, 593, 861, 987
TseI	GCWGC	3 cut(s)	710, 792, 801
TspDTI	ATGAA	8 cut(s)	195, 300, 405, 483, 903, 1304, 1356, 1415
TspRI	CASTG	4 cut(s)	387, 593, 861, 987
VneI	GTGCAC	1 cut(s)	1508
VpaK11BI	GGWCC	1 cut(s)	1187
VspI	ATTAAT	1 cut(s)	1053
XapI	RAATTY	2 cut(s)	720, 1305
XmiI	GTMKAC	1 cut(s)	1257
XmnI	GAANNNNTTC	2 cut(s)	894, 942
XspI	CTAG	3 cut(s)	899, 905, 1193
ZrmI	AGTACT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.