Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000838.1

Orthogroup ID

OG0003684

Physical Location & Seq

Genomic Coordinates Reverse (-)

56127 .. 58088

Gene Structure 1962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000838.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

atggcgacttctgaggataatgacaatcttgtggacaatgattctgaagaagatctgtttgatgacattgcagaacagcatatagagtcttcaaatgagctcaaagtggtggatctctctgatgtggtatgttcaaatgagctcaaagtggtggatcgctctgatgtgtttggcagagatcctcgcaaaagaaccgctcctgtagatgttccttatgatgaatttccacacaaaaggtttaagcaaaacatggagatccaagatgttgtaatggagaatgctctttatttcctccctgccaagtcgctttgcagattcaaaactgttaacaaagagtgggatcggtacattaacagtccctttttcgctcaccagcaaactcactccttccgagacatctctggtcttttttgtcaactccctggtgataagccttccttcatatcactcgatcaagatgcttatggcattcctagtccatccctcagtttcttgcctcagcctgttactctcagaaccgcttgcaatggtctgctttgctgccaaaactgctttgaacaaaatagctactacatttgtaaccctgtgaatgaggaatggaaagtgcttccggagccaaacttttatcatggacctgatcaatcagccttggcactagcctttgagccttcggcactaaactttgcagcacattttgaacttgtgtgtgcattttctctatctttaactgatcaaccagtcatctgctttgagatatactcttcaaggtcaaggtcctggagactcgctgagactgtatgttctgagctagatgccttgaagttgaatggggatggaatcttcctgaagggtgtagtcttttgggaaactttttctggggccattctggcttttgacttgaaggaggagcactatggcattctgtcactccctcccaacagtggaccgcaaggtgttctaacagagatgcggggtgagctgtgctatattctgcctgttagagaaggtaatagttacaccttggaaatctatggtgatatggacatgaatctcaagcatataattcctctcaatcttggttttctttctcatactcaccaagagtcgataagggttttggcttgtgtgaatgatgatgctgtggtaattctttttggagacagagtgattgcttataatatgaaagctaggacggttgaaacattaagggatatagtgaatggtaattacaatggtgaatacaatgctggatttgcaaagtatcttccttatgtgaacagccttgttcatgtacactcatcatacataacgagcctcctttctgaagatcctactacctcctattcctatctgaagtctccctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

454

Amino Acids

51.32

Weight (kDa)

4.72

Isoelectric Point (pI)

42.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003684)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13470 FvH4_1g13470 FvH4_1g13480 FvH4_1g13480 FvH4_1g13480
malus_domestica	MD02G1150100.v1.1 MD02G1150200.v1.1
prunus_persica	Prupe.7G152900_v2.0.a1 Prupe.7G153000_v2.0.a1 Prupe.7G153000_v2.0.a1
pyrus_communis	pycom02g11790 pycom02g11800 pycom15g23040
rosa_chinensis	RchiOBHm_Chr2g0101851 RchiOBHm_Chr2g0101871
rosa_laevigata	RLG00000017105 RLG00000017106
rosa_multiflora	Rmu_sc0000838.1_g000007 Rmu_sc0000838.1_g000009
rosa_roxburghii	Rroxscaffold_2G00140980 Rroxscaffold_2G00140990
rosa_rugosa	Rorug02G0102400 Rorug02G0102600 Rorug02G0102700 Rorug02G0102800
rosa_samantha	Rh2AG149900 Rh2AG150000 Rh2BG155400 Rh2BG155600 Rh2CG155800 Rh2CG155900 Rh2DG155600 Rh2DG155700
rosa_wichuraiana	Rw2G011730 Rw2G011740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1176
AccBSI	CCGCTC	1 cut(s)	197
AccIII	TCCGGA	1 cut(s)	610
AciI	CCGC	4 cut(s)	195, 519, 947, 970
AclWI	GGATC	6 cut(s)	120, 162, 173, 250, 348, 1322
AcsI	RAATTY	1 cut(s)	221
AcuI	CTGAAG	3 cut(s)	66, 866, 1344
AfaI	GTAC	2 cut(s)	347, 1293
AfiI	CCNNNNNNNGG	1 cut(s)	941
AjnI	CCWGG	2 cut(s)	421, 776
AluBI	AGCT	6 cut(s)	100, 142, 567, 808, 979, 1187
AluI	AGCT	6 cut(s)	100, 142, 567, 808, 979, 1187
Alw21I	GWGCWC	3 cut(s)	102, 144, 912
Alw26I	GTCTC	4 cut(s)	387, 775, 785, 1152
AlwI	GGATC	6 cut(s)	120, 162, 173, 250, 348, 1322
Aor13HI	TCCGGA	1 cut(s)	610
AoxI	GGCC	1 cut(s)	879
ApeKI	GCWGC	2 cut(s)	540, 686
ApoI	RAATTY	1 cut(s)	221
AspS9I	GGNCC	4 cut(s)	632, 774, 879, 944
AsuHPI	GGTGA	6 cut(s)	362, 437, 986, 1046, 1088, 1247
AvaII	GGWCC	3 cut(s)	632, 774, 944
BanII	GRGCYC	2 cut(s)	102, 144
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	3 cut(s)	102, 144, 912
BbvCI	CCTCAGC	1 cut(s)	498
BbvI	GCAGC	2 cut(s)	527, 698
BccI	CCATC	2 cut(s)	487, 827
BcgI	CGANNNNNNTGC	2 cut(s)	440, 474
BciT130I	CCWGG	2 cut(s)	423, 778
BclI	TGATCA	2 cut(s)	637, 730
BcoDI	GTCTC	4 cut(s)	387, 775, 785, 1152
BfaI	CTAG	4 cut(s)	474, 656, 809, 1188
BfmI	CTRYAG	1 cut(s)	201
BglI	GCCNNNNNGGC	1 cut(s)	887
BglII	AGATCT	1 cut(s)	52
BisI	GCNGC	2 cut(s)	541, 687
BlsI	GCNGC	2 cut(s)	542, 688
Bme1390I	CCNGG	2 cut(s)	423, 778
Bme18I	GGWCC	3 cut(s)	632, 774, 944
BmgT120I	GGNCC	4 cut(s)	632, 774, 879, 944
BmiI	GGNNCC	2 cut(s)	615, 880
BmrFI	CCNGG	2 cut(s)	423, 778
BmsI	GCATC	4 cut(s)	448, 802, 957, 1126
BpiI	GAAGAC	1 cut(s)	81
BplI	GAGNNNNNCTC	2 cut(s)	743, 775
BpmI	CTGGAG	1 cut(s)	799
Bpu10I	CCTNAGC	1 cut(s)	498
BpuEI	CTTGAG	1 cut(s)	1037
BsaJI	CCNNGG	3 cut(s)	421, 648, 1020
BsaWI	WCCGGW	1 cut(s)	610
BsaXI	ACNNNNNCTCC	2 cut(s)	1149, 1179
Bsc4I	CCNNNNNNNGG	1 cut(s)	941
Bse1I	ACTGG	1 cut(s)	737
Bse3DI	GCAATG	2 cut(s)	66, 532
BseAI	TCCGGA	1 cut(s)	610
BseBI	CCWGG	2 cut(s)	423, 778
BseDI	CCNNGG	3 cut(s)	421, 648, 1020
BseGI	GGATG	2 cut(s)	479, 838
BseLI	CCNNNNNNNGG	1 cut(s)	941
BseMI	GCAATG	2 cut(s)	66, 532
BseMII	CTCAG	5 cut(s)	499, 512, 526, 780, 795
BseNI	ACTGG	1 cut(s)	737
BseRI	GAGGAG	1 cut(s)	920
BseXI	GCAGC	2 cut(s)	527, 698
BshFI	GGCC	1 cut(s)	881
BsiHKAI	GWGCWC	3 cut(s)	102, 144, 912
BsiSI	CCGG	1 cut(s)	611
BslFI	GGGAC	1 cut(s)	342
BslI	CCNNNNNNNGG	1 cut(s)	941
BsmAI	GTCTC	4 cut(s)	387, 775, 785, 1152
BsmFI	GGGAC	1 cut(s)	342
BsmI	GAATGC	3 cut(s)	283, 468, 918
BsnI	GGCC	1 cut(s)	881
Bsp1286I	GDGCHC	3 cut(s)	102, 144, 912
Bsp13I	TCCGGA	1 cut(s)	610
Bsp1407I	TGTACA	1 cut(s)	1291
BspACI	CCGC	4 cut(s)	195, 519, 947, 970
BspANI	GGCC	1 cut(s)	881
BspCNI	CTCAG	6 cut(s)	4, 498, 511, 525, 781, 796
BspEI	TCCGGA	1 cut(s)	610
BspLI	GGNNCC	2 cut(s)	615, 880
BspPI	GGATC	6 cut(s)	120, 162, 173, 250, 348, 1322
BsrBI	CCGCTC	1 cut(s)	197
BsrDI	GCAATG	2 cut(s)	66, 532
BsrGI	TGTACA	1 cut(s)	1291
BsrI	ACTGG	1 cut(s)	737
BssECI	CCNNGG	3 cut(s)	421, 648, 1020
BssT1I	CCWWGG	2 cut(s)	648, 1020
Bst2UI	CCWGG	2 cut(s)	423, 778
Bst4CI	ACNGT	5 cut(s)	325, 356, 796, 941, 1195
Bst6I	CTCTTC	1 cut(s)	766
BstAUI	TGTACA	1 cut(s)	1291
BstC8I	GCNNGC	1 cut(s)	523
BstDEI	CTNAG	6 cut(s)	12, 485, 498, 512, 789, 804
BstF5I	GGATG	2 cut(s)	479, 838
BstMAI	GTCTC	4 cut(s)	387, 775, 785, 1152
BstMWI	GCNNNNNNNGC	5 cut(s)	549, 613, 887, 976, 1253
BstNI	CCWGG	2 cut(s)	423, 778
BstSCI	CCNGG	2 cut(s)	421, 776
BstSFI	CTRYAG	1 cut(s)	201
BstV1I	GCAGC	2 cut(s)	527, 698
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	5 cut(s)	52, 112, 178, 255, 1327
BstYI	RGATCY	5 cut(s)	52, 112, 178, 255, 1327
BsuRI	GGCC	1 cut(s)	881
BtsCI	GGATG	2 cut(s)	479, 838
BtsIMutI	CAGTG	1 cut(s)	946
Cac8I	GCNNGC	1 cut(s)	523
Cfr13I	GGNCC	4 cut(s)	632, 774, 879, 944
Csp6I	GTAC	2 cut(s)	346, 1292
CviAII	CATG	4 cut(s)	250, 629, 1045, 1289
CviQI	GTAC	2 cut(s)	346, 1292
DdeI	CTNAG	6 cut(s)	12, 485, 498, 512, 789, 804
Eam1104I	CTCTTC	1 cut(s)	766
EarI	CTCTTC	1 cut(s)	766
Ecl136II	GAGCTC	2 cut(s)	100, 142
Eco130I	CCWWGG	2 cut(s)	648, 1020
Eco24I	GRGCYC	2 cut(s)	102, 144
Eco47I	GGWCC	3 cut(s)	632, 774, 944
Eco53kI	GAGCTC	2 cut(s)	100, 142
Eco57I	CTGAAG	3 cut(s)	66, 866, 1344
EcoICRI	GAGCTC	2 cut(s)	100, 142
EcoO109I	RGGNCCY	1 cut(s)	774
EcoRII	CCWGG	2 cut(s)	421, 776
EcoT14I	CCWWGG	2 cut(s)	648, 1020
EcoT38I	GRGCYC	2 cut(s)	102, 144
ErhI	CCWWGG	2 cut(s)	648, 1020
FaeI	CATG	4 cut(s)	253, 632, 1048, 1292
FalI	AAGNNNNNCTT	2 cut(s)	422, 454
FaqI	GGGAC	1 cut(s)	342
FatI	CATG	4 cut(s)	249, 628, 1044, 1288
FauI	CCCGC	1 cut(s)	963
FbaI	TGATCA	2 cut(s)	637, 730
Fnu4HI	GCNGC	2 cut(s)	541, 687
FokI	GGATG	2 cut(s)	466, 845
FriOI	GRGCYC	2 cut(s)	102, 144
Fsp4HI	GCNGC	2 cut(s)	541, 687
FspBI	CTAG	4 cut(s)	474, 656, 809, 1188
GluI	GCNGC	2 cut(s)	541, 687
GsuI	CTGGAG	1 cut(s)	799
HaeIII	GGCC	1 cut(s)	881
HapII	CCGG	1 cut(s)	611
Hin1II	CATG	4 cut(s)	253, 632, 1048, 1292
HincII	GTYRAC	2 cut(s)	328, 416
HindII	GTYRAC	2 cut(s)	328, 416
HinfI	GANTC	7 cut(s)	41, 86, 315, 783, 837, 1048, 1103
HpaI	GTTAAC	1 cut(s)	328
HpaII	CCGG	1 cut(s)	611
HphI	GGTGA	6 cut(s)	362, 437, 986, 1046, 1088, 1247
Hpy166II	GTNNAC	6 cut(s)	34, 328, 416, 944, 1276, 1294
Hpy188I	TCNGA	9 cut(s)	13, 46, 121, 163, 392, 515, 805, 1324, 1353
Hpy188III	TCNNGA	3 cut(s)	455, 611, 844
Hpy8I	GTNNAC	6 cut(s)	34, 328, 416, 944, 1276, 1294
HpyAV	CCTTC	7 cut(s)	397, 444, 448, 678, 841, 895, 998
HpyCH4III	ACNGT	5 cut(s)	325, 356, 796, 941, 1195
HpyCH4V	TGCA	6 cut(s)	71, 312, 525, 686, 710, 1256
HpyF10VI	GCNNNNNNNGC	5 cut(s)	549, 613, 887, 976, 1253
HpyF3I	CTNAG	6 cut(s)	12, 485, 498, 512, 789, 804
Hsp92II	CATG	4 cut(s)	253, 632, 1048, 1292
Kpn2I	TCCGGA	1 cut(s)	610
Ksp22I	TGATCA	2 cut(s)	637, 730
KspAI	GTTAAC	1 cut(s)	328
LmnI	GCTCC	3 cut(s)	202, 613, 907
Lsp1109I	GCAGC	2 cut(s)	527, 698
LweI	GCATC	4 cut(s)	448, 802, 957, 1126
MaeI	CTAG	4 cut(s)	474, 656, 809, 1188
MaeIII	GTNAC	4 cut(s)	505, 578, 924, 1013
MbiI	CCGCTC	1 cut(s)	197
MboII	GAAGA	7 cut(s)	59, 62, 81, 753, 832, 1256, 1337
MflI	RGATCY	5 cut(s)	52, 112, 178, 255, 1327
MhlI	GDGCHC	3 cut(s)	102, 144, 912
MluCI	AATT	4 cut(s)	221, 1062, 1146, 1225
MlyI	GAGTC	3 cut(s)	95, 777, 1112
MroI	TCCGGA	1 cut(s)	610
MseI	TTAA	5 cut(s)	240, 327, 351, 725, 1205
MspI	CCGG	1 cut(s)	611
MspR9I	CCNGG	2 cut(s)	423, 778
Mva1269I	GAATGC	3 cut(s)	283, 468, 918
MvaI	CCWGG	2 cut(s)	423, 778
MwoI	GCNNNNNNNGC	5 cut(s)	549, 613, 887, 976, 1253
NlaIII	CATG	4 cut(s)	253, 632, 1048, 1292
NlaIV	GGNNCC	2 cut(s)	615, 880
NmuCI	GTSAC	1 cut(s)	924
PctI	GAATGC	3 cut(s)	283, 468, 918
PfeI	GAWTC	4 cut(s)	41, 315, 837, 1048
PfoI	TCCNGGA	1 cut(s)	776
PkrI	GCNGC	2 cut(s)	542, 688
PleI	GAGTC	3 cut(s)	94, 777, 1111
PpsI	GAGTC	3 cut(s)	94, 777, 1111
PpuMI	RGGWCCY	1 cut(s)	774
PsiI	TTATAA	1 cut(s)	1176
Psp124BI	GAGCTC	2 cut(s)	102, 144
Psp5II	RGGWCCY	1 cut(s)	774
Psp6I	CCWGG	2 cut(s)	421, 776
PspGI	CCWGG	2 cut(s)	421, 776
PspN4I	GGNNCC	2 cut(s)	615, 880
PspPI	GGNCC	4 cut(s)	632, 774, 879, 944
PspPPI	RGGWCCY	1 cut(s)	774
PsuI	RGATCY	5 cut(s)	52, 112, 178, 255, 1327
RsaI	GTAC	2 cut(s)	347, 1293
RsaNI	GTAC	2 cut(s)	346, 1292
SacI	GAGCTC	2 cut(s)	102, 144
SaqAI	TTAA	5 cut(s)	240, 327, 351, 725, 1205
SatI	GCNGC	2 cut(s)	541, 687
Sau96I	GGNCC	4 cut(s)	632, 774, 879, 944
SchI	GAGTC	3 cut(s)	95, 777, 1112
ScrFI	CCNGG	2 cut(s)	423, 778
SduI	GDGCHC	3 cut(s)	102, 144, 912
SfaNI	GCATC	4 cut(s)	448, 802, 957, 1126
SfcI	CTRYAG	1 cut(s)	201
SinI	GGWCC	3 cut(s)	632, 774, 944
SmlI	CTYRAG	1 cut(s)	1052
SmoI	CTYRAG	1 cut(s)	1052
Sse9I	AATT	4 cut(s)	221, 1062, 1146, 1225
SsiI	CCGC	4 cut(s)	195, 519, 947, 970
SspMI	CTAG	4 cut(s)	474, 656, 809, 1188
SstI	GAGCTC	2 cut(s)	102, 144
StyD4I	CCNGG	2 cut(s)	421, 776
StyI	CCWWGG	2 cut(s)	648, 1020
TaaI	ACNGT	5 cut(s)	325, 356, 796, 941, 1195
TaqI	TCGA	2 cut(s)	450, 1106
TasI	AATT	4 cut(s)	221, 1062, 1146, 1225
TatI	WGTACW	1 cut(s)	1291
TfiI	GAWTC	4 cut(s)	41, 315, 837, 1048
Tru1I	TTAA	5 cut(s)	240, 327, 351, 725, 1205
Tru9I	TTAA	5 cut(s)	240, 327, 351, 725, 1205
TscAI	CASTG	1 cut(s)	946
TseFI	GTSAC	1 cut(s)	924
TseI	GCWGC	2 cut(s)	540, 686
Tsp45I	GTSAC	1 cut(s)	924
TspDTI	ATGAA	5 cut(s)	234, 430, 1061, 1196, 1277
TspRI	CASTG	1 cut(s)	946
VpaK11BI	GGWCC	3 cut(s)	632, 774, 944
XapI	RAATTY	1 cut(s)	221
XspI	CTAG	4 cut(s)	474, 656, 809, 1188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.