Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003684

Physical Location & Seq

Genomic Coordinates Reverse (-)

7404489 .. 7407691

Gene Structure 3203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g13480.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGATCATGCTCTTTATTTCCTCCCTGCCAAGTCGCTTTGCAGATTCAAAACTGTTAGCAAGGAGTGGGATAAGTTGATTAACAAACCCTTTTTCGCCCACCAGCAAACTCACTCCTTCCGAGACATCTCTGGTCTTTTTTGTCAACTCCCTGGTGATAAGCCTTCCTTCATCTCACTTGATAGAAATGCTTATGGCATTCCTAGTCCATCCCTCCGTTTCTTGCCTCAGCCTGTTACTATCAGAACTGCTTGCAAGGGTCTGCTCTGCTGCCAAAACAGTTTTGAACAAAATAGATACTATATTTGTAACCCTGTGAATGAGGAATGGAAAGTGCTTCCAGAACCAATCCTTTATCATGGACCTGATCAATCAGCCTTGGCACTAGCCTTTGAGCCTTCAGCACTAAACTTTGCAGCACATTTTGAACTTGTGTGTGCAGTTTCTCTATGTTTAACTGATGAACCAGTTATCCGTTTTGAGATTTACTCTTCAAGGTCAAGCTCCTGGAGACTCGCTGAGACTATGTGTTCTGAGGTAGATGCCTTGAAGTTGACTGGGGATGGAATCTTTCTGAAGGGTGTAGTCTTTTGGGAAACTTTTGCTGGGGCCATTCTGGCTTTTGACTTGAAGGAGGAGCACTATGGAATTCTGTCACTCCCTCCCAACAGTGGACTGAAAGGAGTTTTAACAGAGATGCGTGGTGAACTGTGCTATATTCTTCCTGTTAGAGAAGGCAATGATTACACCTTGGAAATCTATGGTGATTTGGATATGAATCTCAAGCATATAGTTCTTCTTGATCTTGGTTTTCTTTCTCGTGCTCAACTTGGTTTTGTTTCACGTGCTCATCGTGGTTTGCTAAGGGTTCTGGCTTGTGTGAAAGATGATACTGTAATAATCCTTGTCGAAGATAGAGTGATTGCTTATAATATGAAATCTTGGACGGTTCAAACTCTAAGGCATAACGTGATTGGTGCTTACAGTGCGGATTACAATGCTGGATTTGCAAAGTATCTTCCTTATGTGAACAGCCTCGTTCATGTACGTTCATCATACTTAACGAGCCTCCTATCTGAAGATCCTAGTTCCTCTTATTCCTATCTGGAGTCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

373

Amino Acids

41.94

Weight (kDa)

5.95

Isoelectric Point (pI)

38.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	80 - 243	3.1e-07	F-box associated beta propeller domain
FBA_1	PF07734	83 - 236	2.3e-11	F-box associated beta propeller domain
b-prop_At3g26010-like	PF24750	83 - 254	1.2e-09	F-box protein At3g26010-like, beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003684)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13470 FvH4_1g13470 FvH4_1g13480 FvH4_1g13480 FvH4_1g13480
malus_domestica	MD02G1150100.v1.1 MD02G1150200.v1.1
prunus_persica	Prupe.7G152900_v2.0.a1 Prupe.7G153000_v2.0.a1 Prupe.7G153000_v2.0.a1
pyrus_communis	pycom02g11790 pycom02g11800 pycom15g23040
rosa_chinensis	RchiOBHm_Chr2g0101851 RchiOBHm_Chr2g0101871
rosa_laevigata	RLG00000017105 RLG00000017106
rosa_multiflora	Rmu_sc0000838.1_g000007 Rmu_sc0000838.1_g000009
rosa_roxburghii	Rroxscaffold_2G00140980 Rroxscaffold_2G00140990
rosa_rugosa	Rorug02G0102400 Rorug02G0102600 Rorug02G0102700 Rorug02G0102800
rosa_samantha	Rh2AG149900 Rh2AG150000 Rh2BG155400 Rh2BG155600 Rh2CG155800 Rh2CG155900 Rh2DG155600 Rh2DG155700
rosa_wichuraiana	Rw2G011730 Rw2G011740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	930
AciI	CCGC	1 cut(s)	989
AclWI	GGATC	2 cut(s)	12, 1076
AcsI	RAATTY	1 cut(s)	648
AcuI	CTGAAG	3 cut(s)	384, 596, 1098
AcvI	CACGTG	1 cut(s)	845
AfaI	GTAC	1 cut(s)	1047
AfiI	CCNNNNNNNGG	1 cut(s)	671
AgsI	TTSAA	7 cut(s)	49, 287, 428, 495, 550, 631, 953
AjnI	CCWGG	2 cut(s)	151, 506
AloI	GAACNNNNNNTCC	2 cut(s)	456, 488
AluBI	AGCT	1 cut(s)	504
AluI	AGCT	1 cut(s)	504
Alw21I	GWGCWC	3 cut(s)	642, 826, 850
Alw26I	GTCTC	3 cut(s)	117, 505, 515
AlwI	GGATC	2 cut(s)	12, 1076
AoxI	GGCC	1 cut(s)	609
ApeKI	GCWGC	2 cut(s)	270, 416
ApoI	RAATTY	1 cut(s)	648
AspS9I	GGNCC	2 cut(s)	362, 609
AsuHPI	GGTGA	3 cut(s)	167, 716, 776
AvaII	GGWCC	1 cut(s)	362
BauI	CACGAG	1 cut(s)	819
BbrPI	CACGTG	1 cut(s)	845
Bbv12I	GWGCWC	3 cut(s)	642, 826, 850
BbvCI	CCTCAGC	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	257, 428
BccI	CCATC	2 cut(s)	217, 557
BciT130I	CCWGG	2 cut(s)	153, 508
BclI	TGATCA	1 cut(s)	367
BcoDI	GTCTC	3 cut(s)	117, 505, 515
BfaI	CTAG	3 cut(s)	204, 386, 1086
BglI	GCCNNNNNGGC	1 cut(s)	617
BisI	GCNGC	2 cut(s)	271, 417
BlsI	GCNGC	2 cut(s)	272, 418
Bme1390I	CCNGG	2 cut(s)	153, 508
Bme18I	GGWCC	1 cut(s)	362
BmgT120I	GGNCC	2 cut(s)	362, 609
BmiI	GGNNCC	1 cut(s)	610
BmrFI	CCNGG	2 cut(s)	153, 508
BmrI	ACTGGG	1 cut(s)	567
BmsI	GCATC	2 cut(s)	532, 687
BmuI	ACTGGG	1 cut(s)	567
BplI	GAGNNNNNCTC	2 cut(s)	473, 505
BpmI	CTGGAG	1 cut(s)	529
Bpu10I	CCTNAGC	2 cut(s)	228, 863
BpuEI	CTTGAG	1 cut(s)	767
BsaAI	YACGTR	1 cut(s)	845
BsaBI	GATNNNNATC	1 cut(s)	777
BsaJI	CCNNGG	3 cut(s)	151, 378, 750
Bsc4I	CCNNNNNNNGG	1 cut(s)	671
Bse1I	ACTGG	2 cut(s)	467, 562
Bse3DI	GCAATG	1 cut(s)	745
Bse8I	GATNNNNATC	1 cut(s)	777
BseBI	CCWGG	2 cut(s)	153, 508
BseDI	CCNNGG	3 cut(s)	151, 378, 750
BseGI	GGATG	2 cut(s)	209, 568
BseJI	GATNNNNATC	1 cut(s)	777
BseLI	CCNNNNNNNGG	1 cut(s)	671
BseMI	GCAATG	1 cut(s)	745
BseMII	CTCAG	3 cut(s)	242, 510, 525
BseNI	ACTGG	2 cut(s)	467, 562
BseRI	GAGGAG	1 cut(s)	650
BseXI	GCAGC	2 cut(s)	257, 428
BseYI	CCCAGC	1 cut(s)	605
BsgI	GTGCAG	1 cut(s)	459
BshFI	GGCC	1 cut(s)	611
BsiHKAI	GWGCWC	3 cut(s)	642, 826, 850
BslI	CCNNNNNNNGG	1 cut(s)	671
BsmAI	GTCTC	3 cut(s)	117, 505, 515
BsmI	GAATGC	1 cut(s)	198
BsnI	GGCC	1 cut(s)	611
Bsp1286I	GDGCHC	3 cut(s)	642, 826, 850
Bsp143I	GATC	4 cut(s)	4, 367, 802, 1081
BspACI	CCGC	1 cut(s)	989
BspANI	GGCC	1 cut(s)	611
BspCNI	CTCAG	3 cut(s)	241, 511, 526
BspLI	GGNNCC	1 cut(s)	610
BspPI	GGATC	2 cut(s)	12, 1076
BsrDI	GCAATG	1 cut(s)	745
BsrI	ACTGG	2 cut(s)	467, 562
BssECI	CCNNGG	3 cut(s)	151, 378, 750
BssMI	GATC	4 cut(s)	4, 367, 802, 1081
BssSI	CACGAG	1 cut(s)	819
BssT1I	CCWWGG	2 cut(s)	378, 750
Bst2BI	CACGAG	1 cut(s)	819
Bst2UI	CCWGG	2 cut(s)	153, 508
Bst4CI	ACNGT	7 cut(s)	55, 281, 671, 711, 895, 949, 986
Bst6I	CTCTTC	1 cut(s)	496
BstBAI	YACGTR	1 cut(s)	845
BstC8I	GCNNGC	1 cut(s)	253
BstDEI	CTNAG	5 cut(s)	228, 519, 534, 863, 959
BstF5I	GGATG	2 cut(s)	209, 568
BstKTI	GATC	4 cut(s)	7, 370, 805, 1084
BstMAI	GTCTC	3 cut(s)	117, 505, 515
BstMBI	GATC	4 cut(s)	4, 367, 802, 1081
BstMWI	GCNNNNNNNGC	3 cut(s)	617, 986, 1007
BstNI	CCWGG	2 cut(s)	153, 508
BstSCI	CCNGG	2 cut(s)	151, 506
BstV1I	GCAGC	2 cut(s)	257, 428
BstX2I	RGATCY	1 cut(s)	1081
BstYI	RGATCY	1 cut(s)	1081
BsuRI	GGCC	1 cut(s)	611
BtsCI	GGATG	2 cut(s)	209, 568
BtsIMutI	CAGTG	2 cut(s)	676, 991
Cac8I	GCNNGC	1 cut(s)	253
Cfr13I	GGNCC	2 cut(s)	362, 609
Csp6I	GTAC	1 cut(s)	1046
CviAII	CATG	3 cut(s)	8, 359, 1043
CviQI	GTAC	1 cut(s)	1046
DdeI	CTNAG	5 cut(s)	228, 519, 534, 863, 959
DpnI	GATC	4 cut(s)	6, 369, 804, 1083
DpnII	GATC	4 cut(s)	4, 367, 802, 1081
Eam1104I	CTCTTC	1 cut(s)	496
EarI	CTCTTC	1 cut(s)	496
Eco130I	CCWWGG	2 cut(s)	378, 750
Eco47I	GGWCC	1 cut(s)	362
Eco57I	CTGAAG	3 cut(s)	384, 596, 1098
Eco72I	CACGTG	1 cut(s)	845
EcoRI	GAATTC	1 cut(s)	648
EcoRII	CCWGG	2 cut(s)	151, 506
EcoT14I	CCWWGG	2 cut(s)	378, 750
ErhI	CCWWGG	2 cut(s)	378, 750
FaeI	CATG	3 cut(s)	11, 362, 1046
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FatI	CATG	3 cut(s)	7, 358, 1042
FbaI	TGATCA	1 cut(s)	367
Fnu4HI	GCNGC	2 cut(s)	271, 417
FokI	GGATG	2 cut(s)	196, 575
Fsp4HI	GCNGC	2 cut(s)	271, 417
FspBI	CTAG	3 cut(s)	204, 386, 1086
GluI	GCNGC	2 cut(s)	271, 417
GsaI	CCCAGC	1 cut(s)	609
GsuI	CTGGAG	1 cut(s)	529
HaeIII	GGCC	1 cut(s)	611
Hin1II	CATG	3 cut(s)	11, 362, 1046
HincII	GTYRAC	2 cut(s)	146, 555
HindII	GTYRAC	2 cut(s)	146, 555
HinfI	GANTC	5 cut(s)	45, 513, 567, 778, 1109
HphI	GGTGA	3 cut(s)	167, 716, 776
Hpy166II	GTNNAC	5 cut(s)	146, 555, 674, 707, 1030
Hpy188I	TCNGA	6 cut(s)	122, 245, 535, 576, 1078, 1118
Hpy188III	TCNNGA	3 cut(s)	341, 800, 1106
Hpy8I	GTNNAC	5 cut(s)	146, 555, 674, 707, 1030
HpyAV	CCTTC	7 cut(s)	127, 174, 178, 408, 571, 625, 728
HpyCH4III	ACNGT	7 cut(s)	55, 281, 671, 711, 895, 949, 986
HpyCH4IV	ACGT	3 cut(s)	844, 969, 1048
HpyCH4V	TGCA	5 cut(s)	42, 255, 416, 440, 1010
HpyF10VI	GCNNNNNNNGC	3 cut(s)	617, 986, 1007
HpyF3I	CTNAG	5 cut(s)	228, 519, 534, 863, 959
HpySE526I	ACGT	3 cut(s)	844, 969, 1048
Hsp92II	CATG	3 cut(s)	11, 362, 1046
Ksp22I	TGATCA	1 cut(s)	367
Kzo9I	GATC	4 cut(s)	4, 367, 802, 1081
LmnI	GCTCC	2 cut(s)	509, 637
Lsp1109I	GCAGC	2 cut(s)	257, 428
LweI	GCATC	2 cut(s)	532, 687
MaeI	CTAG	3 cut(s)	204, 386, 1086
MaeII	ACGT	3 cut(s)	844, 969, 1048
MaeIII	GTNAC	3 cut(s)	235, 308, 654
MalI	GATC	4 cut(s)	6, 369, 804, 1083
MboI	GATC	4 cut(s)	4, 367, 802, 1081
MboII	GAAGA	6 cut(s)	483, 713, 788, 923, 1010, 1091
MflI	RGATCY	1 cut(s)	1081
MhlI	GDGCHC	3 cut(s)	642, 826, 850
MluCI	AATT	1 cut(s)	648
MlyI	GAGTC	2 cut(s)	507, 1118
MseI	TTAA	4 cut(s)	81, 455, 689, 1061
MspR9I	CCNGG	2 cut(s)	153, 508
Mva1269I	GAATGC	1 cut(s)	198
MvaI	CCWGG	2 cut(s)	153, 508
MwoI	GCNNNNNNNGC	3 cut(s)	617, 986, 1007
NdeII	GATC	4 cut(s)	4, 367, 802, 1081
NlaIII	CATG	3 cut(s)	11, 362, 1046
NlaIV	GGNNCC	1 cut(s)	610
NmuCI	GTSAC	1 cut(s)	654
PcsI	WCGNNNNNNNCGW	1 cut(s)	850
PctI	GAATGC	1 cut(s)	198
PfeI	GAWTC	3 cut(s)	45, 567, 778
PfoI	TCCNGGA	1 cut(s)	506
PkrI	GCNGC	2 cut(s)	272, 418
PleI	GAGTC	2 cut(s)	507, 1117
PmaCI	CACGTG	1 cut(s)	845
PmlI	CACGTG	1 cut(s)	845
PpsI	GAGTC	2 cut(s)	507, 1117
Ppu21I	YACGTR	1 cut(s)	845
PsiI	TTATAA	1 cut(s)	930
Psp6I	CCWGG	2 cut(s)	151, 506
PspCI	CACGTG	1 cut(s)	845
PspFI	CCCAGC	1 cut(s)	605
PspGI	CCWGG	2 cut(s)	151, 506
PspN4I	GGNNCC	1 cut(s)	610
PspPI	GGNCC	2 cut(s)	362, 609
PsuI	RGATCY	1 cut(s)	1081
RsaI	GTAC	1 cut(s)	1047
RsaNI	GTAC	1 cut(s)	1046
SaqAI	TTAA	4 cut(s)	81, 455, 689, 1061
SatI	GCNGC	2 cut(s)	271, 417
Sau3AI	GATC	4 cut(s)	4, 367, 802, 1081
Sau96I	GGNCC	2 cut(s)	362, 609
SchI	GAGTC	2 cut(s)	507, 1118
ScrFI	CCNGG	2 cut(s)	153, 508
SduI	GDGCHC	3 cut(s)	642, 826, 850
SetI	ASST	8 cut(s)	367, 500, 506, 540, 752, 847, 972, 1051
SfaNI	GCATC	2 cut(s)	532, 687
SinI	GGWCC	1 cut(s)	362
SmlI	CTYRAG	1 cut(s)	782
SmoI	CTYRAG	1 cut(s)	782
Sse9I	AATT	1 cut(s)	648
SsiI	CCGC	1 cut(s)	989
SspMI	CTAG	3 cut(s)	204, 386, 1086
StyD4I	CCNGG	2 cut(s)	151, 506
StyI	CCWWGG	2 cut(s)	378, 750
TaaI	ACNGT	7 cut(s)	55, 281, 671, 711, 895, 949, 986
TaiI	ACGT	3 cut(s)	847, 972, 1051
TaqI	TCGA	1 cut(s)	909
TasI	AATT	1 cut(s)	648
TfiI	GAWTC	3 cut(s)	45, 567, 778
Tru1I	TTAA	4 cut(s)	81, 455, 689, 1061
Tru9I	TTAA	4 cut(s)	81, 455, 689, 1061
TscAI	CASTG	2 cut(s)	676, 991
TseFI	GTSAC	1 cut(s)	654
TseI	GCWGC	2 cut(s)	270, 416
Tsp45I	GTSAC	1 cut(s)	654
TspDTI	ATGAA	6 cut(s)	160, 477, 791, 950, 1031, 1041
TspGWI	ACGGA	2 cut(s)	206, 464
TspRI	CASTG	2 cut(s)	676, 991
VpaK11BI	GGWCC	1 cut(s)	362
XapI	RAATTY	1 cut(s)	648
XspI	CTAG	3 cut(s)	204, 386, 1086

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.