Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003684

Physical Location & Seq

Genomic Coordinates Reverse (-)

11817015 .. 11819201

Gene Structure 2187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G011740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGGCGACTTCTGAGGATAATGACAATCTTGTGGACAATGATTCTGAAGAAGATCTGTTTGATGACATTGCAGAACAGCATATAGAGTCTTCAAATGAGCTCAAAGTGGTGGATCTCTCTGATGTGTTTGGCAGAGATCCTCGCAAAAGAACCGCTCCTGTAGATGTTCCTTATGATGAATTTCCACACAAAAGGTTTAAGCAAAACATGGAGATCCAAGATGTTGTAATGGAGCATGCTCTTTATTTCCTCCCTGCCAAGTCGCTTTGCAGATTCAAAACTGTTAACAAAGAGTGGGATCGGTACATTAACAGTCCCTTTTTCGCTCACCAGCAAACTCACTCCTTCCGAGACATCTCTGGTCTTTTTTGTCAACTCCCTGGTGATAAGCCTTCCTTCATATCACTCGATCAAGATGCTTATGGCATTCCTAGTCCATCCCTCAGTTTCTTGCCTCAGCCTGTTACTCTCAGAACCGCTTGCAATGGTCTGCTTTGCTGCCAAAACTGCTTTGAACAAAATAGCTACTACATTTGTAACCCTGTGAATGAGGAATGGAAAGTGCTTCCGGAGCCAAACTTTTATCATGGACCTGATCAATCAGCCTTGGCACTAGCCTTTGAGCCTTCGGCACTAAACTTTGCAGCACATTTTGAACTTGTGTGTGCATTTTCTCTATCTTTAACTGATCAACCAGTCATCTGCTTTGAGATATACTCTTCAAGGTCAAGGTCCTGGAGACTCGCTGAGACTGTATGTTCTGAGCTAGATGCCTTGAAGTTGAATGGGGATGGAATCTTCCTGAAGGGTGTAGTCTTTTGGGAAACTTTTGCTGGGGCCATTCTGGCTTTTGACTTGAAGGAGGAGCACTATGGCATTCTGTCACTCCCTCCCAACAGTGGACCGCAAGGTGTTCTAACAGAGATGCGGGGTGAGCTGTGCTATATTCTGCCTGTTAGAGAAGGTAATAGTTACACCTTGGAAATCTATGGTGATATGGACATGAATCTCAAGCATATAATTCCTCTCAATCTTGGTTTTCTTTCTCATACTCACCAAGAGTCGATAAGGGTTTTGGCTTGTGTGAATGATGATGCTGTGGTAATTCTTTTTGGAGACAGAGTGATTGCTTATAATATGAAAGCTAGGACGGTTGAAACATTAAGGGATATAGTGAATGGTAATTACAATGGTGAATACAATGCTGGATTTGCAAAGTATCTTCCTTATGTGAACAGCCTTGTTCATGTACACTCATCATACATAACGAGCCTCCTTTCTGAAGATCCTACTACCTCCTATTCCTATCTGAAGACGTTCTTGGGATTGATTGATTTTTTGCAAGTTCAATTCACAACTTCTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

455

Amino Acids

51.55

Weight (kDa)

4.73

Isoelectric Point (pI)

42.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	158 - 327	9.3e-07	F-box associated beta propeller domain
FBA_1	PF07734	159 - 330	5.1e-12	F-box associated beta propeller domain
b-prop_At3g26010-like	PF24750	159 - 330	5.5e-09	F-box protein At3g26010-like, beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003684)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13470 FvH4_1g13470 FvH4_1g13480 FvH4_1g13480 FvH4_1g13480
malus_domestica	MD02G1150100.v1.1 MD02G1150200.v1.1
prunus_persica	Prupe.7G152900_v2.0.a1 Prupe.7G153000_v2.0.a1 Prupe.7G153000_v2.0.a1
pyrus_communis	pycom02g11790 pycom02g11800 pycom15g23040
rosa_chinensis	RchiOBHm_Chr2g0101851 RchiOBHm_Chr2g0101871
rosa_laevigata	RLG00000017105 RLG00000017106
rosa_multiflora	Rmu_sc0000838.1_g000007 Rmu_sc0000838.1_g000009
rosa_roxburghii	Rroxscaffold_2G00140980 Rroxscaffold_2G00140990
rosa_rugosa	Rorug02G0102400 Rorug02G0102600 Rorug02G0102700 Rorug02G0102800
rosa_samantha	Rh2AG149900 Rh2AG150000 Rh2BG155400 Rh2BG155600 Rh2CG155800 Rh2CG155900 Rh2DG155600 Rh2DG155700
rosa_wichuraiana	Rw2G011730 Rw2G011740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1134
AccBSI	CCGCTC	1 cut(s)	155
AccIII	TCCGGA	1 cut(s)	568
AciI	CCGC	4 cut(s)	153, 477, 905, 928
AclWI	GGATC	5 cut(s)	120, 131, 208, 306, 1280
AcsI	RAATTY	1 cut(s)	179
AcuI	CTGAAG	4 cut(s)	66, 824, 1302, 1331
AfaI	GTAC	2 cut(s)	305, 1251
AfiI	CCNNNNNNNGG	1 cut(s)	899
AjnI	CCWGG	2 cut(s)	379, 734
AjuI	GAANNNNNNNTTGG	2 cut(s)	1304, 1336
AluBI	AGCT	5 cut(s)	100, 525, 766, 937, 1145
AluI	AGCT	5 cut(s)	100, 525, 766, 937, 1145
Alw21I	GWGCWC	2 cut(s)	102, 870
Alw26I	GTCTC	4 cut(s)	345, 733, 743, 1110
AlwI	GGATC	5 cut(s)	120, 131, 208, 306, 1280
Aor13HI	TCCGGA	1 cut(s)	568
AoxI	GGCC	1 cut(s)	837
ApeKI	GCWGC	2 cut(s)	498, 644
ApoI	RAATTY	1 cut(s)	179
Asp700I	GAANNNNTTC	1 cut(s)	1316
AspS9I	GGNCC	4 cut(s)	590, 732, 837, 902
AsuHPI	GGTGA	6 cut(s)	320, 395, 944, 1004, 1046, 1205
AvaII	GGWCC	3 cut(s)	590, 732, 902
BanII	GRGCYC	1 cut(s)	102
BbsI	GAAGAC	2 cut(s)	81, 1319
Bbv12I	GWGCWC	2 cut(s)	102, 870
BbvCI	CCTCAGC	1 cut(s)	456
BbvI	GCAGC	2 cut(s)	485, 656
BccI	CCATC	2 cut(s)	445, 785
BcgI	CGANNNNNNTGC	2 cut(s)	398, 432
BciT130I	CCWGG	2 cut(s)	381, 736
BclI	TGATCA	2 cut(s)	595, 688
BcoDI	GTCTC	4 cut(s)	345, 733, 743, 1110
BfaI	CTAG	4 cut(s)	432, 614, 767, 1146
BfmI	CTRYAG	1 cut(s)	159
BglI	GCCNNNNNGGC	1 cut(s)	845
BglII	AGATCT	1 cut(s)	52
BisI	GCNGC	2 cut(s)	499, 645
BlsI	GCNGC	2 cut(s)	500, 646
Bme1390I	CCNGG	2 cut(s)	381, 736
Bme18I	GGWCC	3 cut(s)	590, 732, 902
BmgT120I	GGNCC	4 cut(s)	590, 732, 837, 902
BmiI	GGNNCC	2 cut(s)	573, 838
BmrFI	CCNGG	2 cut(s)	381, 736
BmsI	GCATC	4 cut(s)	406, 760, 915, 1084
BpiI	GAAGAC	2 cut(s)	81, 1319
BplI	GAGNNNNNCTC	2 cut(s)	701, 733
BpmI	CTGGAG	1 cut(s)	757
Bpu10I	CCTNAGC	1 cut(s)	456
BpuEI	CTTGAG	1 cut(s)	995
BsaJI	CCNNGG	3 cut(s)	379, 606, 978
BsaWI	WCCGGW	1 cut(s)	568
BsaXI	ACNNNNNCTCC	2 cut(s)	1107, 1137
Bsc4I	CCNNNNNNNGG	1 cut(s)	899
Bse1I	ACTGG	1 cut(s)	695
Bse3DI	GCAATG	2 cut(s)	66, 490
BseAI	TCCGGA	1 cut(s)	568
BseBI	CCWGG	2 cut(s)	381, 736
BseDI	CCNNGG	3 cut(s)	379, 606, 978
BseGI	GGATG	2 cut(s)	437, 796
BseLI	CCNNNNNNNGG	1 cut(s)	899
BseMI	GCAATG	2 cut(s)	66, 490
BseMII	CTCAG	5 cut(s)	457, 470, 484, 738, 753
BseNI	ACTGG	1 cut(s)	695
BseRI	GAGGAG	1 cut(s)	878
BseXI	GCAGC	2 cut(s)	485, 656
BseYI	CCCAGC	1 cut(s)	833
BshFI	GGCC	1 cut(s)	839
BsiHKAI	GWGCWC	2 cut(s)	102, 870
BsiSI	CCGG	1 cut(s)	569
BslFI	GGGAC	1 cut(s)	300
BslI	CCNNNNNNNGG	1 cut(s)	899
BsmAI	GTCTC	4 cut(s)	345, 733, 743, 1110
BsmFI	GGGAC	1 cut(s)	300
BsmI	GAATGC	2 cut(s)	426, 876
BsnI	GGCC	1 cut(s)	839
Bsp1286I	GDGCHC	2 cut(s)	102, 870
Bsp13I	TCCGGA	1 cut(s)	568
Bsp1407I	TGTACA	1 cut(s)	1249
Bsp143I	GATC	9 cut(s)	52, 112, 136, 213, 298, 409, 595, 688, 1285
BspACI	CCGC	4 cut(s)	153, 477, 905, 928
BspANI	GGCC	1 cut(s)	839
BspCNI	CTCAG	6 cut(s)	4, 456, 469, 483, 739, 754
BspEI	TCCGGA	1 cut(s)	568
BspLI	GGNNCC	2 cut(s)	573, 838
BspPI	GGATC	5 cut(s)	120, 131, 208, 306, 1280
BsrBI	CCGCTC	1 cut(s)	155
BsrDI	GCAATG	2 cut(s)	66, 490
BsrGI	TGTACA	1 cut(s)	1249
BsrI	ACTGG	1 cut(s)	695
BssECI	CCNNGG	3 cut(s)	379, 606, 978
BssMI	GATC	9 cut(s)	52, 112, 136, 213, 298, 409, 595, 688, 1285
BssT1I	CCWWGG	2 cut(s)	606, 978
Bst2UI	CCWGG	2 cut(s)	381, 736
Bst4CI	ACNGT	5 cut(s)	283, 314, 754, 899, 1153
Bst6I	CTCTTC	1 cut(s)	724
BstAUI	TGTACA	1 cut(s)	1249
BstC8I	GCNNGC	2 cut(s)	237, 481
BstDEI	CTNAG	6 cut(s)	12, 443, 456, 470, 747, 762
BstF5I	GGATG	2 cut(s)	437, 796
BstKTI	GATC	9 cut(s)	55, 115, 139, 216, 301, 412, 598, 691, 1288
BstMAI	GTCTC	4 cut(s)	345, 733, 743, 1110
BstMBI	GATC	9 cut(s)	52, 112, 136, 213, 298, 409, 595, 688, 1285
BstMWI	GCNNNNNNNGC	5 cut(s)	507, 571, 845, 934, 1211
BstNI	CCWGG	2 cut(s)	381, 736
BstNSI	RCATGY	1 cut(s)	239
BstSCI	CCNGG	2 cut(s)	379, 734
BstSFI	CTRYAG	1 cut(s)	159
BstV1I	GCAGC	2 cut(s)	485, 656
BstV2I	GAAGAC	2 cut(s)	81, 1319
BstX2I	RGATCY	5 cut(s)	52, 112, 136, 213, 1285
BstYI	RGATCY	5 cut(s)	52, 112, 136, 213, 1285
BsuRI	GGCC	1 cut(s)	839
BtsCI	GGATG	2 cut(s)	437, 796
BtsIMutI	CAGTG	1 cut(s)	904
Cac8I	GCNNGC	2 cut(s)	237, 481
Cfr13I	GGNCC	4 cut(s)	590, 732, 837, 902
Csp6I	GTAC	2 cut(s)	304, 1250
CviAII	CATG	5 cut(s)	208, 236, 587, 1003, 1247
CviQI	GTAC	2 cut(s)	304, 1250
DdeI	CTNAG	6 cut(s)	12, 443, 456, 470, 747, 762
DpnI	GATC	9 cut(s)	54, 114, 138, 215, 300, 411, 597, 690, 1287
DpnII	GATC	9 cut(s)	52, 112, 136, 213, 298, 409, 595, 688, 1285
Eam1104I	CTCTTC	1 cut(s)	724
EarI	CTCTTC	1 cut(s)	724
Ecl136II	GAGCTC	1 cut(s)	100
Eco130I	CCWWGG	2 cut(s)	606, 978
Eco24I	GRGCYC	1 cut(s)	102
Eco47I	GGWCC	3 cut(s)	590, 732, 902
Eco53kI	GAGCTC	1 cut(s)	100
Eco57I	CTGAAG	4 cut(s)	66, 824, 1302, 1331
EcoICRI	GAGCTC	1 cut(s)	100
EcoO109I	RGGNCCY	1 cut(s)	732
EcoRII	CCWGG	2 cut(s)	379, 734
EcoT14I	CCWWGG	2 cut(s)	606, 978
EcoT38I	GRGCYC	1 cut(s)	102
ErhI	CCWWGG	2 cut(s)	606, 978
FaeI	CATG	5 cut(s)	211, 239, 590, 1006, 1250
FalI	AAGNNNNNCTT	4 cut(s)	380, 412, 1304, 1336
FaqI	GGGAC	1 cut(s)	300
FatI	CATG	5 cut(s)	207, 235, 586, 1002, 1246
FauI	CCCGC	1 cut(s)	921
FbaI	TGATCA	2 cut(s)	595, 688
Fnu4HI	GCNGC	2 cut(s)	499, 645
FokI	GGATG	2 cut(s)	424, 803
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	2 cut(s)	499, 645
FspBI	CTAG	4 cut(s)	432, 614, 767, 1146
GluI	GCNGC	2 cut(s)	499, 645
GsaI	CCCAGC	1 cut(s)	837
GsuI	CTGGAG	1 cut(s)	757
HaeIII	GGCC	1 cut(s)	839
HapII	CCGG	1 cut(s)	569
Hin1II	CATG	5 cut(s)	211, 239, 590, 1006, 1250
HincII	GTYRAC	2 cut(s)	286, 374
HindII	GTYRAC	2 cut(s)	286, 374
HinfI	GANTC	7 cut(s)	41, 86, 273, 741, 795, 1006, 1061
HpaI	GTTAAC	1 cut(s)	286
HpaII	CCGG	1 cut(s)	569
HphI	GGTGA	6 cut(s)	320, 395, 944, 1004, 1046, 1205
Hpy166II	GTNNAC	6 cut(s)	34, 286, 374, 902, 1234, 1252
Hpy188I	TCNGA	8 cut(s)	13, 46, 121, 350, 473, 763, 1282, 1311
Hpy188III	TCNNGA	3 cut(s)	413, 569, 802
Hpy8I	GTNNAC	6 cut(s)	34, 286, 374, 902, 1234, 1252
HpyAV	CCTTC	7 cut(s)	355, 402, 406, 636, 799, 853, 956
HpyCH4III	ACNGT	5 cut(s)	283, 314, 754, 899, 1153
HpyCH4IV	ACGT	1 cut(s)	1316
HpyCH4V	TGCA	7 cut(s)	71, 270, 483, 644, 668, 1214, 1342
HpyF10VI	GCNNNNNNNGC	5 cut(s)	507, 571, 845, 934, 1211
HpyF3I	CTNAG	6 cut(s)	12, 443, 456, 470, 747, 762
HpySE526I	ACGT	1 cut(s)	1316
Hsp92II	CATG	5 cut(s)	211, 239, 590, 1006, 1250
Kpn2I	TCCGGA	1 cut(s)	568
Ksp22I	TGATCA	2 cut(s)	595, 688
KspAI	GTTAAC	1 cut(s)	286
Kzo9I	GATC	9 cut(s)	52, 112, 136, 213, 298, 409, 595, 688, 1285
LmnI	GCTCC	4 cut(s)	160, 232, 571, 865
Lsp1109I	GCAGC	2 cut(s)	485, 656
LweI	GCATC	4 cut(s)	406, 760, 915, 1084
MaeI	CTAG	4 cut(s)	432, 614, 767, 1146
MaeII	ACGT	1 cut(s)	1316
MaeIII	GTNAC	4 cut(s)	463, 536, 882, 971
MalI	GATC	9 cut(s)	54, 114, 138, 215, 300, 411, 597, 690, 1287
MbiI	CCGCTC	1 cut(s)	155
MboI	GATC	9 cut(s)	52, 112, 136, 213, 298, 409, 595, 688, 1285
MboII	GAAGA	8 cut(s)	59, 62, 81, 711, 790, 1214, 1295, 1324
MflI	RGATCY	5 cut(s)	52, 112, 136, 213, 1285
MhlI	GDGCHC	2 cut(s)	102, 870
MluCI	AATT	5 cut(s)	179, 1020, 1104, 1183, 1349
MlyI	GAGTC	3 cut(s)	95, 735, 1070
MroI	TCCGGA	1 cut(s)	568
MroXI	GAANNNNTTC	1 cut(s)	1316
MseI	TTAA	5 cut(s)	198, 285, 309, 683, 1163
MspI	CCGG	1 cut(s)	569
MspR9I	CCNGG	2 cut(s)	381, 736
Mva1269I	GAATGC	2 cut(s)	426, 876
MvaI	CCWGG	2 cut(s)	381, 736
MwoI	GCNNNNNNNGC	5 cut(s)	507, 571, 845, 934, 1211
NdeII	GATC	9 cut(s)	52, 112, 136, 213, 298, 409, 595, 688, 1285
NlaIII	CATG	5 cut(s)	211, 239, 590, 1006, 1250
NlaIV	GGNNCC	2 cut(s)	573, 838
NmuCI	GTSAC	1 cut(s)	882
NspI	RCATGY	1 cut(s)	239
PaeI	GCATGC	1 cut(s)	239
PctI	GAATGC	2 cut(s)	426, 876
PdmI	GAANNNNTTC	1 cut(s)	1316
PfeI	GAWTC	4 cut(s)	41, 273, 795, 1006
PfoI	TCCNGGA	1 cut(s)	734
PkrI	GCNGC	2 cut(s)	500, 646
PleI	GAGTC	3 cut(s)	94, 735, 1069
PpsI	GAGTC	3 cut(s)	94, 735, 1069
PpuMI	RGGWCCY	1 cut(s)	732
PsiI	TTATAA	1 cut(s)	1134
Psp124BI	GAGCTC	1 cut(s)	102
Psp5II	RGGWCCY	1 cut(s)	732
Psp6I	CCWGG	2 cut(s)	379, 734
PspFI	CCCAGC	1 cut(s)	833
PspGI	CCWGG	2 cut(s)	379, 734
PspN4I	GGNNCC	2 cut(s)	573, 838
PspPI	GGNCC	4 cut(s)	590, 732, 837, 902
PspPPI	RGGWCCY	1 cut(s)	732
PsuI	RGATCY	5 cut(s)	52, 112, 136, 213, 1285
RsaI	GTAC	2 cut(s)	305, 1251
RsaNI	GTAC	2 cut(s)	304, 1250
SacI	GAGCTC	1 cut(s)	102
SaqAI	TTAA	5 cut(s)	198, 285, 309, 683, 1163
SatI	GCNGC	2 cut(s)	499, 645
Sau3AI	GATC	9 cut(s)	52, 112, 136, 213, 298, 409, 595, 688, 1285
Sau96I	GGNCC	4 cut(s)	590, 732, 837, 902
SchI	GAGTC	3 cut(s)	95, 735, 1070
ScrFI	CCNGG	2 cut(s)	381, 736
SduI	GDGCHC	2 cut(s)	102, 870
SfaNI	GCATC	4 cut(s)	406, 760, 915, 1084
SfcI	CTRYAG	1 cut(s)	159
SinI	GGWCC	3 cut(s)	590, 732, 902
SmlI	CTYRAG	1 cut(s)	1010
SmoI	CTYRAG	1 cut(s)	1010
SphI	GCATGC	1 cut(s)	239
Sse9I	AATT	5 cut(s)	179, 1020, 1104, 1183, 1349
SsiI	CCGC	4 cut(s)	153, 477, 905, 928
SspMI	CTAG	4 cut(s)	432, 614, 767, 1146
SstI	GAGCTC	1 cut(s)	102
StyD4I	CCNGG	2 cut(s)	379, 734
StyI	CCWWGG	2 cut(s)	606, 978
TaaI	ACNGT	5 cut(s)	283, 314, 754, 899, 1153
TaiI	ACGT	1 cut(s)	1319
TaqI	TCGA	2 cut(s)	408, 1064
TasI	AATT	5 cut(s)	179, 1020, 1104, 1183, 1349
TatI	WGTACW	1 cut(s)	1249
TfiI	GAWTC	4 cut(s)	41, 273, 795, 1006
Tru1I	TTAA	5 cut(s)	198, 285, 309, 683, 1163
Tru9I	TTAA	5 cut(s)	198, 285, 309, 683, 1163
TscAI	CASTG	1 cut(s)	904
TseFI	GTSAC	1 cut(s)	882
TseI	GCWGC	2 cut(s)	498, 644
Tsp45I	GTSAC	1 cut(s)	882
TspDTI	ATGAA	5 cut(s)	192, 388, 1019, 1154, 1235
TspRI	CASTG	1 cut(s)	904
VpaK11BI	GGWCC	3 cut(s)	590, 732, 902
XapI	RAATTY	1 cut(s)	179
XceI	RCATGY	1 cut(s)	239
XmnI	GAANNNNTTC	1 cut(s)	1316
XspI	CTAG	4 cut(s)	432, 614, 767, 1146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.