Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003684

Physical Location & Seq

Genomic Coordinates Reverse (-)

8364708 .. 8366587

Gene Structure 1880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g11800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1533 bp

ATGGATAACGATAAAGATGTTGGCAGCGACTCTGACTCTTATGTCATTGTGAGCATTGCCAATTCTGTGTGCAGTGATTCTGAAAGTGTTGCGGATAGTGATTATGAAAATTACGAAATTGTGAGTCCTAAAAACAATGTGGCTACTGATTCCGGAGAAGATCTATTCGATGGAAGCACACAACAGTCGAAGAATGTGGAAAAGGACGGTTATGTGTGGTCTGACTTTGATTGTGGTGAGGGCACTGATTCTGAAGAAGTTCTATCTGATGAAAGCGAACAACATTTGAAGAAAGTGGATATTGATAGTTATCTGAGTACCGATTCTGAAAAAGAACTATCTGATGGATTCAGGAGACGGTTGAAGATTATCGATAATCACCATTACATGGATACTGTACTCACTGGGAAACAGTTGAAGATGAGGCACTGTTCTTGTGAGTTTCACACATATCCATGTAAAAGAATCGGTCCTGCCCATGACTGTTCTAAACTTTCCCATGATGAAAGGCTTTATAAGAGAATGGACATAGGTGATGTTGCAATGGAGAATGTTCTTCCTTTCCTCCCTGCAAAAATGCTGTGCAGGTTGAGAACTGTTAGCAAACAGTGGGATAAGTGGATTTCTAGTCCTTTCTTCAGTCATAAGCAAACTTACTACTTCAGGAAAATCTCTGGTCTTTTTTGTCAATCCCCTGGTGGCAACCCTTACTTCCTTCCACTTGATAATGATTCTTACGGTGTTCCTAGATCTTACCTCAACTTCATGCCTGAACCAGTTATTGCAAAGGCCACTTGCAATGGTCTGGTCTGCTGTCAGAGCAGAGACGAAGAAGATACCTACTACATTTGCAACCCTGTGAACAGGCAATTTAGAAAGCTTCCCAATTCAGGTTTGTATCATGGATCTGAGTCTTATCCGGCACTAGCCTTTGAGCCTTCTGTGCTTGGCTTTGAAGTGCATTTTCAACTTGTCTGTGCCTTCTCTGTACCCGGTCATTTGGGTGTCTATTTTGATATATACTCTTCAAGGTCAAGCGATTGGGAACTCTCCGAGACAGTATGCTATGAGCTGGAGGCTACAAAGTTGGAAGGTAATACCCTCTTTCTGAAGGGTGTACTCTTTTGGGAAACTTTAACGGGTGTCATTCTGGCTTTTGACTTGAAGGCGATGCAATATAGTATTCTGTCACTCCCCGGACCACGCGGTGTTATTTCACAGATGAATGGAGAGCTGTGTTACATTCTGCCTCGTGATGAACTCGGTCTGTACTCCGTGGAGGTCTATGGTAACATGGACATGAGCCTGAAGTGGAAGATTATTCTCTTTGGCCAGAGTTTCTCCTCTTATATGTACACATTTCGGGTATTGGCTTGTGTGAATGATGATCTGATGATACTTCTTGTCGGACAGAGGGTGATTGCGTATCATGTGAAAGTCCCGGAGGAAAAAGTATTGAAAAGAATTGATTACGGGCTTGCTGCTGGAAATGAAAGGTATCTTCCATACGTGAACAGCCTTGTGCAGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

511

Amino Acids

57.97

Weight (kDa)

4.96

Isoelectric Point (pI)

46.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
b-prop_At3g26010-like	PF24750	260 - 388	7.1e-09	F-box protein At3g26010-like, beta-propeller
FBA_1	PF07734	265 - 510	1.2e-08	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003684)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13470 FvH4_1g13470 FvH4_1g13480 FvH4_1g13480 FvH4_1g13480
malus_domestica	MD02G1150100.v1.1 MD02G1150200.v1.1
prunus_persica	Prupe.7G152900_v2.0.a1 Prupe.7G153000_v2.0.a1 Prupe.7G153000_v2.0.a1
pyrus_communis	pycom02g11790 pycom02g11800 pycom15g23040
rosa_chinensis	RchiOBHm_Chr2g0101851 RchiOBHm_Chr2g0101871
rosa_laevigata	RLG00000017105 RLG00000017106
rosa_multiflora	Rmu_sc0000838.1_g000007 Rmu_sc0000838.1_g000009
rosa_roxburghii	Rroxscaffold_2G00140980 Rroxscaffold_2G00140990
rosa_rugosa	Rorug02G0102400 Rorug02G0102600 Rorug02G0102700 Rorug02G0102800
rosa_samantha	Rh2AG149900 Rh2AG150000 Rh2BG155400 Rh2BG155600 Rh2CG155800 Rh2CG155900 Rh2DG155600 Rh2DG155700
rosa_wichuraiana	Rw2G011730 Rw2G011740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	516
AasI	GACNNNNNNGTC	1 cut(s)	41
Acc36I	ACCTGC	1 cut(s)	576
AccB7I	CCANNNNNTGG	1 cut(s)	388
AccII	CGCG	1 cut(s)	1206
AccIII	TCCGGA	1 cut(s)	152
AciI	CCGC	2 cut(s)	92, 1206
AclWI	GGATC	1 cut(s)	913
AcoI	YGGCCR	1 cut(s)	1330
AcuI	CTGAAG	5 cut(s)	273, 622, 646, 1130, 1328
AdeI	CACNNNGTG	1 cut(s)	1208
AfaI	GTAC	6 cut(s)	319, 399, 990, 1119, 1271, 1355
AfiI	CCNNNNNNNGG	2 cut(s)	388, 890
AgsI	TTSAA	8 cut(s)	289, 364, 418, 956, 968, 1029, 1165, 1459
AjnI	CCWGG	1 cut(s)	694
AluBI	AGCT	3 cut(s)	880, 1072, 1234
AluI	AGCT	3 cut(s)	880, 1072, 1234
Alw26I	GTCTC	3 cut(s)	349, 819, 1049
AlwI	GGATC	1 cut(s)	913
Aor13HI	TCCGGA	1 cut(s)	152
AoxI	GGCC	2 cut(s)	789, 1330
ApeKI	GCWGC	2 cut(s)	24, 1481
Asp700I	GAANNNNTTC	1 cut(s)	258
AspS9I	GGNCC	2 cut(s)	470, 1199
AsuC2I	CCSGG	3 cut(s)	993, 1197, 1442
AsuHPI	GGTGA	4 cut(s)	248, 371, 545, 1429
AvaII	GGWCC	2 cut(s)	470, 1199
BaeGI	GKGCMC	1 cut(s)	245
BalI	TGGCCA	1 cut(s)	1332
BauI	CACGAG	1 cut(s)	1251
BbvI	GCAGC	2 cut(s)	36, 1468
BccI	CCATC	2 cut(s)	164, 338
BciT130I	CCWGG	1 cut(s)	696
BciVI	GTATCC	1 cut(s)	385
BcnI	CCSGG	3 cut(s)	993, 1197, 1442
BcoDI	GTCTC	3 cut(s)	349, 819, 1049
BfaI	CTAG	4 cut(s)	627, 747, 926, 1531
BfuAI	ACCTGC	1 cut(s)	576
BfuI	GTATCC	1 cut(s)	385
BglII	AGATCT	3 cut(s)	160, 749, 1527
BisI	GCNGC	2 cut(s)	25, 1482
BlsI	GCNGC	2 cut(s)	26, 1483
Bme1390I	CCNGG	4 cut(s)	696, 993, 1197, 1442
Bme18I	GGWCC	2 cut(s)	470, 1199
BmgT120I	GGNCC	2 cut(s)	470, 1199
BmrFI	CCNGG	4 cut(s)	696, 993, 1197, 1442
BmrI	ACTGGG	1 cut(s)	414
BmsI	GCATC	1 cut(s)	1161
BmuI	ACTGGG	1 cut(s)	414
BpmI	CTGGAG	1 cut(s)	1094
BpuMI	CCSGG	3 cut(s)	993, 1197, 1442
Bsa29I	ATCGAT	1 cut(s)	372
BsaAI	YACGTR	1 cut(s)	1510
BsaBI	GATNNNNATC	1 cut(s)	309
BsaJI	CCNNGG	3 cut(s)	694, 1195, 1275
BsaWI	WCCGGW	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	2 cut(s)	388, 890
Bse1I	ACTGG	2 cut(s)	409, 776
Bse3DI	GCAATG	3 cut(s)	54, 549, 805
Bse8I	GATNNNNATC	1 cut(s)	309
BseAI	TCCGGA	1 cut(s)	152
BseBI	CCWGG	1 cut(s)	696
BseCI	ATCGAT	1 cut(s)	372
BseDI	CCNNGG	3 cut(s)	694, 1195, 1275
BseJI	GATNNNNATC	1 cut(s)	309
BseLI	CCNNNNNNNGG	2 cut(s)	388, 890
BseMI	GCAATG	3 cut(s)	54, 549, 805
BseMII	CTCAG	2 cut(s)	305, 900
BseNI	ACTGG	2 cut(s)	409, 776
BseRI	GAGGAG	1 cut(s)	1333
BseSI	GKGCMC	1 cut(s)	245
BseXI	GCAGC	2 cut(s)	36, 1468
BsgI	GTGCAG	2 cut(s)	91, 604
Bsh1236I	CGCG	1 cut(s)	1206
BshFI	GGCC	2 cut(s)	791, 1332
BshVI	ATCGAT	1 cut(s)	372
BsiSI	CCGG	5 cut(s)	153, 920, 993, 1197, 1442
BslFI	GGGAC	1 cut(s)	1424
BslI	CCNNNNNNNGG	2 cut(s)	388, 890
BsmAI	GTCTC	3 cut(s)	349, 819, 1049
BsmBI	CGTCTC	2 cut(s)	349, 819
BsmFI	GGGAC	1 cut(s)	1424
BsnI	GGCC	2 cut(s)	791, 1332
Bsp1286I	GDGCHC	1 cut(s)	245
Bsp13I	TCCGGA	1 cut(s)	152
Bsp1407I	TGTACA	1 cut(s)	1353
Bsp143I	GATC	5 cut(s)	160, 749, 905, 1387, 1527
BspACI	CCGC	2 cut(s)	92, 1206
BspANI	GGCC	2 cut(s)	791, 1332
BspCNI	CTCAG	2 cut(s)	306, 901
BspDI	ATCGAT	1 cut(s)	372
BspEI	TCCGGA	1 cut(s)	152
BspFNI	CGCG	1 cut(s)	1206
BspMI	ACCTGC	1 cut(s)	576
BspPI	GGATC	1 cut(s)	913
BsrDI	GCAATG	3 cut(s)	54, 549, 805
BsrGI	TGTACA	1 cut(s)	1353
BsrI	ACTGG	2 cut(s)	409, 776
BssECI	CCNNGG	3 cut(s)	694, 1195, 1275
BssMI	GATC	5 cut(s)	160, 749, 905, 1387, 1527
BssSI	CACGAG	1 cut(s)	1251
Bst2BI	CACGAG	1 cut(s)	1251
Bst2UI	CCWGG	1 cut(s)	696
Bst6I	CTCTTC	1 cut(s)	1030
BstAUI	TGTACA	1 cut(s)	1353
BstBAI	YACGTR	1 cut(s)	1510
BstC8I	GCNNGC	1 cut(s)	1479
BstDEI	CTNAG	2 cut(s)	314, 909
BstDSI	CCRYGG	1 cut(s)	1275
BstFNI	CGCG	1 cut(s)	1206
BstKTI	GATC	5 cut(s)	163, 752, 908, 1390, 1530
BstMAI	GTCTC	3 cut(s)	349, 819, 1049
BstMBI	GATC	5 cut(s)	160, 749, 905, 1387, 1527
BstMWI	GCNNNNNNNGC	2 cut(s)	819, 943
BstNI	CCWGG	1 cut(s)	696
BstSCI	CCNGG	4 cut(s)	694, 991, 1195, 1440
BstSLI	GKGCMC	1 cut(s)	245
BstUI	CGCG	1 cut(s)	1206
BstV1I	GCAGC	2 cut(s)	36, 1468
BstX2I	RGATCY	4 cut(s)	160, 749, 905, 1527
BstYI	RGATCY	4 cut(s)	160, 749, 905, 1527
Bsu15I	ATCGAT	1 cut(s)	372
BsuI	GTATCC	1 cut(s)	385
BsuRI	GGCC	2 cut(s)	791, 1332
BsuTUI	ATCGAT	1 cut(s)	372
BtgI	CCRYGG	1 cut(s)	1275
BtgZI	GCGATG	1 cut(s)	1184
BtsI	GCAGTG	1 cut(s)	79
BtsIMutI	CAGTG	5 cut(s)	79, 243, 402, 427, 614
BveI	ACCTGC	1 cut(s)	576
Cac8I	GCNNGC	1 cut(s)	1479
Cfr13I	GGNCC	2 cut(s)	470, 1199
ClaI	ATCGAT	1 cut(s)	372
Csp6I	GTAC	6 cut(s)	318, 398, 989, 1118, 1270, 1354
CviAII	CATG	9 cut(s)	388, 456, 479, 500, 766, 902, 1294, 1300, 1430
CviQI	GTAC	6 cut(s)	318, 398, 989, 1118, 1270, 1354
DdeI	CTNAG	2 cut(s)	314, 909
DpnI	GATC	5 cut(s)	162, 751, 907, 1389, 1529
DpnII	GATC	5 cut(s)	160, 749, 905, 1387, 1527
DraIII	CACNNNGTG	1 cut(s)	1208
DrdI	GACNNNNNNGTC	1 cut(s)	41
DseDI	GACNNNNNNGTC	1 cut(s)	41
EaeI	YGGCCR	1 cut(s)	1330
Eam1104I	CTCTTC	1 cut(s)	1030
EarI	CTCTTC	1 cut(s)	1030
Eco47I	GGWCC	2 cut(s)	470, 1199
Eco57I	CTGAAG	5 cut(s)	273, 622, 646, 1130, 1328
EcoRII	CCWGG	1 cut(s)	694
Esp3I	CGTCTC	2 cut(s)	349, 819
FaeI	CATG	9 cut(s)	391, 459, 482, 503, 769, 905, 1297, 1303, 1433
FaqI	GGGAC	1 cut(s)	1424
FatI	CATG	9 cut(s)	387, 455, 478, 499, 765, 901, 1293, 1299, 1429
Fnu4HI	GCNGC	2 cut(s)	25, 1482
Fsp4HI	GCNGC	2 cut(s)	25, 1482
FspBI	CTAG	4 cut(s)	627, 747, 926, 1531
GluI	GCNGC	2 cut(s)	25, 1482
GsuI	CTGGAG	1 cut(s)	1094
HaeIII	GGCC	2 cut(s)	791, 1332
HapII	CCGG	5 cut(s)	153, 920, 993, 1197, 1442
Hin1II	CATG	9 cut(s)	391, 459, 482, 503, 769, 905, 1297, 1303, 1433
HindIII	AAGCTT	1 cut(s)	878
HpaII	CCGG	5 cut(s)	153, 920, 993, 1197, 1442
HphI	GGTGA	4 cut(s)	248, 371, 545, 1429
Hpy166II	GTNNAC	4 cut(s)	862, 1118, 1356, 1513
Hpy188III	TCNNGA	4 cut(s)	153, 352, 664, 1253
Hpy8I	GTNNAC	4 cut(s)	862, 1118, 1356, 1513
HpyAV	CCTTC	6 cut(s)	725, 948, 991, 1085, 1105, 1159
HpyCH4IV	ACGT	1 cut(s)	1509
HpyF10VI	GCNNNNNNNGC	2 cut(s)	819, 943
HpyF3I	CTNAG	2 cut(s)	314, 909
HpySE526I	ACGT	1 cut(s)	1509
Hsp92II	CATG	9 cut(s)	391, 459, 482, 503, 769, 905, 1297, 1303, 1433
Kpn2I	TCCGGA	1 cut(s)	152
Kzo9I	GATC	5 cut(s)	160, 749, 905, 1387, 1527
Lsp1109I	GCAGC	2 cut(s)	36, 1468
LweI	GCATC	1 cut(s)	1161
MaeI	CTAG	4 cut(s)	627, 747, 926, 1531
MaeII	ACGT	1 cut(s)	1509
MaeIII	GTNAC	3 cut(s)	1188, 1238, 1289
MalI	GATC	5 cut(s)	162, 751, 907, 1389, 1529
MboI	GATC	5 cut(s)	160, 749, 905, 1387, 1527
MflI	RGATCY	4 cut(s)	160, 749, 905, 1527
MhlI	GDGCHC	1 cut(s)	245
MlsI	TGGCCA	1 cut(s)	1332
MluCI	AATT	6 cut(s)	61, 109, 117, 869, 886, 1464
MluNI	TGGCCA	1 cut(s)	1332
MlyI	GAGTC	4 cut(s)	23, 29, 133, 920
MmeI	TCCRAC	2 cut(s)	1068, 1387
Mox20I	TGGCCA	1 cut(s)	1332
MroI	TCCGGA	1 cut(s)	152
MroXI	GAANNNNTTC	1 cut(s)	258
MscI	TGGCCA	1 cut(s)	1332
MseI	TTAA	1 cut(s)	1136
MslI	CAYNNNNRTG	3 cut(s)	454, 1002, 1298
Msp20I	TGGCCA	1 cut(s)	1332
MspI	CCGG	5 cut(s)	153, 920, 993, 1197, 1442
MspR9I	CCNGG	4 cut(s)	696, 993, 1197, 1442
MvaI	CCWGG	1 cut(s)	696
MvnI	CGCG	1 cut(s)	1206
MwoI	GCNNNNNNNGC	2 cut(s)	819, 943
NciI	CCSGG	3 cut(s)	993, 1197, 1442
NdeII	GATC	5 cut(s)	160, 749, 905, 1387, 1527
NlaIII	CATG	9 cut(s)	391, 459, 482, 503, 769, 905, 1297, 1303, 1433
NmuCI	GTSAC	1 cut(s)	1188
PdmI	GAANNNNTTC	1 cut(s)	258
PfeI	GAWTC	7 cut(s)	77, 149, 248, 323, 348, 465, 731
PflMI	CCANNNNNTGG	1 cut(s)	388
PfoI	TCCNGGA	1 cut(s)	1440
PkrI	GCNGC	2 cut(s)	26, 1483
PleI	GAGTC	4 cut(s)	23, 29, 132, 919
PpsI	GAGTC	4 cut(s)	23, 29, 132, 919
Ppu21I	YACGTR	1 cut(s)	1510
PsiI	TTATAA	1 cut(s)	516
Psp6I	CCWGG	1 cut(s)	694
PspGI	CCWGG	1 cut(s)	694
PspPI	GGNCC	2 cut(s)	470, 1199
PsuI	RGATCY	4 cut(s)	160, 749, 905, 1527
RsaI	GTAC	6 cut(s)	319, 399, 990, 1119, 1271, 1355
RsaNI	GTAC	6 cut(s)	318, 398, 989, 1118, 1270, 1354
RseI	CAYNNNNRTG	3 cut(s)	454, 1002, 1298
SaqAI	TTAA	1 cut(s)	1136
SatI	GCNGC	2 cut(s)	25, 1482
Sau3AI	GATC	5 cut(s)	160, 749, 905, 1387, 1527
Sau96I	GGNCC	2 cut(s)	470, 1199
SchI	GAGTC	4 cut(s)	23, 29, 133, 920
ScrFI	CCNGG	4 cut(s)	696, 993, 1197, 1442
SduI	GDGCHC	1 cut(s)	245
SfaNI	GCATC	1 cut(s)	1161
SinI	GGWCC	2 cut(s)	470, 1199
SmiMI	CAYNNNNRTG	3 cut(s)	454, 1002, 1298
Sse9I	AATT	6 cut(s)	61, 109, 117, 869, 886, 1464
SsiI	CCGC	2 cut(s)	92, 1206
SspMI	CTAG	4 cut(s)	627, 747, 926, 1531
StyD4I	CCNGG	4 cut(s)	694, 991, 1195, 1440
TaiI	ACGT	1 cut(s)	1512
TaqI	TCGA	3 cut(s)	168, 188, 372
TaqII	GACCGA	2 cut(s)	458, 1253
TasI	AATT	6 cut(s)	61, 109, 117, 869, 886, 1464
TatI	WGTACW	4 cut(s)	397, 1117, 1269, 1353
TfiI	GAWTC	7 cut(s)	77, 149, 248, 323, 348, 465, 731
Tru1I	TTAA	1 cut(s)	1136
Tru9I	TTAA	1 cut(s)	1136
TscAI	CASTG	5 cut(s)	79, 250, 409, 434, 614
TseFI	GTSAC	1 cut(s)	1188
TseI	GCWGC	2 cut(s)	24, 1481
Tsp45I	GTSAC	1 cut(s)	1188
TspDTI	ATGAA	7 cut(s)	120, 285, 519, 754, 1238, 1272, 1506
TspGWI	ACGGA	1 cut(s)	1264
TspRI	CASTG	5 cut(s)	79, 250, 409, 434, 614
Van91I	CCANNNNNTGG	1 cut(s)	388
VpaK11BI	GGWCC	2 cut(s)	470, 1199
XmnI	GAANNNNTTC	1 cut(s)	258
XspI	CTAG	4 cut(s)	627, 747, 926, 1531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.